Phocoena sinus (vaquita): 116755474
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Entry
116755474 CDS
T07759
Name
(RefSeq) contactin-associated protein-like 3 isoform X1
KO
K24337
contactin associated protein-like 3/4
Organism
psiu
Phocoena sinus (vaquita)
Brite
KEGG Orthology (KO) [BR:
psiu00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04990 Domain-containing proteins not elsewhere classified [BR:
psiu04990
]
116755474
Domain-containing proteins not elsewhere classified [BR:
psiu04990
]
Laminin domain-containing proteins
Laminin G domain-containing proteins
116755474
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Laminin_G_2
Laminin_G_1
F5_F8_type_C
Laminin_G_3
EGF
COLFI
3keto-disac_hyd
Motif
Other DBs
NCBI-GeneID:
116755474
NCBI-ProteinID:
XP_032490878
LinkDB
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Position
6:96665791..96821407
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AA seq
1221 aa
AA seq
DB search
MEVTAVATQGGYGSSNWVTSYLLMFSDGRRNWKQYRREESIWGFPGNTNADSVVHYKLQP
PFEARFLRFLPLTWNPKGRIGMRIEVYGCAYRSEMVHFDGKSSLLYTFNQKSMNPTKEVI
SLKFKTRENNGILLHREGPNGKHITLELVKGKLILFLNSGDANLPSPDALMLGSLLDDQH
WHSVLIELLDTDVNFTVDTHTHHFRAKGESSYVDLDYKISFGGIPRHRKSVAFPHKNFHG
CFENLCYNGVDIIDLSKKHKPQVLIMGNVSFSCSHPQTVPMTFLSSRSYLALPGTSGEDR
VSAIFQFRTWNRAGLLLTSQFQHRSGAFILVLNDGKLKLSLSQPGHPVRDVTAGAGLNDG
QWHSVSLSAKGNHLSVRVDGEAASMAHSLRGQIDSGDTYYLGGCPDNSSDPGCASPLNGF
QGCLRLISIGDKAVDPISIQQGALGSYRDLQIDTCGLTDRCLPSYCEHGGECSQSWDTFS
CNCAHTGYTGATCHSSVYEQSCEAHRHRGNSSGLYYIDSDGSGPLGPSLVYCNMTDTAWT
SVQHNGSHLVSVKSSNGESPQPVFFKYTASMDQLQAIIDYVDHCQQKLTFHCKKSRLSTP
HDGTPVSWWVGRTNETHTYWGGSLPDAQKCTCGLEGNCIDSQYYCNCDADRNEWTSNTVV
LSHKKHLPVTQVVMRDTGRPHSEVAYTLGPLLCSGDNSFWNSASFNTETSYLHFPTFRGE
LSADVSFFFKTTAFTGVFVENLGITDFIRLELRAPAEVTFSFDVGNGPCEVTVQSPTPFN
DNRWHHVRAERNVKEASLQVDQLPRETQTAPADGHARLQLNSQLFVGGTASRQRGFLGCI
RSLRLNGLALDLEERATMTPGVEPGCPGHCSSYGHLCRNGGRCREKRRGIECDCTFSAYD
GPFCESEISAYFGAGSSVIYDFQHINDTFSKNSSSFVALFHEDLTLTGEMTTLSFRTTGM
PSLLLYVSSFYEEYLSVILAPNGSLQIRYKLNRHREPDVFNFDFKNLADGQLHQVKINRE
AAVVFVEVNQNARRQVILSSGTEFNAVKSLTLGTILGPPGADRDTQRAGALGFTGCLSAV
RFGPAAPLKAALRPGGPARVTVRGHVAAASRCAEGAGPGAPAPEATRPLSGGAGRSGSTD
EGTPLVNANRSDSAVIGGVIAVVIFILLCITAIAVRIYQQRWLSEKNESNIPKTGDNAET
ALKSELNMQSTVSESQKEYFF
NT seq
3666 nt
NT seq
+upstream
nt +downstream
nt
atggaggtcacagctgtggccacccagggaggatacgggagctccaactgggtgaccagc
tacctcctgatgttcagcgatggcaggaggaactggaagcaatatcgacgagaggagagc
atctggggttttccaggaaacacaaatgcagacagcgtggtgcactacaaactccagcct
cccttcgaagccagattcctgcgcttcctccccttaacctggaatcccaagggcaggatt
gggatgaggattgaagtgtacggatgtgcatacagatctgagatggttcattttgatggg
aaaagttccttgctgtacacatttaatcagaaatccatgaatccaacaaaagaagttatt
tctttgaaatttaaaaccagagagaacaatgggattctactccacagagaaggaccaaat
ggtaaacatatcaccctggagttagttaaaggaaaactcatcttattccttaattcagga
gatgctaacctgccctcccctgatgccctcatgctgggcagcctgctggacgaccagcac
tggcattctgtcctcattgagctcctcgatactgatgtcaacttcaccgtggacacgcac
actcatcattttcgggcaaagggagagtccagctatgtggatcttgattataagatcagc
ttcggagggattcctcgacatagaaaatcagtggctttcccacataaaaactttcatggc
tgctttgaaaatctctgttataatggggtggatatcattgatttgtccaagaaacacaaa
ccacaggtcctcatcatgggaaatgtgtccttctcctgctcgcacccgcaaactgtcccc
atgactttcctgagctccaggagttacttggctttgccaggcacctccggagaggacaga
gtgtctgccatcttccaatttcgaacgtggaacagagcagggctgttgctgaccagtcag
tttcaacacaggtcaggagctttcatccttgttcttaatgatggaaaactcaagctgagt
ctctcccagcctggacatccagtaagggacgtcacagcaggtgctggattgaatgatggg
cagtggcattctgtgtccttatctgcaaaagggaatcacctgagtgtgagggtggacggt
gaggcagcctccatggctcattccctgcgtgggcagattgattcaggtgacacctattat
ttggggggctgtcctgacaacagctctgaccctggatgtgcaagtcccctgaatggattt
cagggctgcctgaggctcatctccattggtgacaaagcggtggatcccatctccatacag
cagggggcgctggggagttaccgtgacctccagatagacacctgtggcctcacagacagg
tgtttgcccagctattgtgaacatgggggtgaatgttcccagtcctgggacaccttctcc
tgcaactgtgcacacactggttacaccggtgcaacctgccattcctctgtctacgagcag
tcatgtgaagcccacaggcacagaggaaactcttcagggctctactatatcgactcagac
ggaagtggcccgctgggaccatcccttgtatattgcaacatgacagacactgcatggacc
tcagtgcagcacaatggctcccacttggttagtgtcaaaagctcgaatggagaaagcccc
caacctgtgtttttcaagtacacagccagcatggaccagctccaggccataattgactat
gtggaccactgccaacagaagctgactttccactgcaagaagtcaaggctttcaactccc
catgatggaaccccagtgagctggtgggttggaagaaccaatgaaacacacacttactgg
ggaggttctctgcctgatgctcaaaaatgtacttgtggattagaggggaactgcattgat
tctcaatattactgcaactgtgatgctgaccggaatgaatggaccagcaacacagtagtc
ctttcccataagaagcacttgccggtcactcaggttgtgatgagagacacagggcgacca
cattctgaagtggcttatacactggggcctctgctctgctcgggggacaattcattttgg
aattcagcttccttcaatactgagacttcataccttcatttccctacattccgaggagag
cttagcgctgatgtgtctttcttttttaagaccacagcttttacgggggtgtttgtagag
aacctggggatcacagacttcatcaggctagagctgcgagcccctgcagaagtgaccttt
tcctttgatgtggggaatgggccttgtgaggtcaccgtgcagtcccccactccctttaac
gacaatagatggcaccatgtgagggcagaacggaacgttaaagaagcatcccttcaagtg
gatcagctccctagggagacccaaactgccccagctgatgggcacgcccgcttgcagctc
aacagccagctctttgtgggtggaacagcaagcagacagagaggctttctgggatgcatt
cggtctctaaggttgaacgggctggccctggatctggaagaaagagccacaatgacgcca
ggagtggagccagggtgtccaggacactgtagcagctacggacacctgtgtcgcaatgga
gggaggtgtagagaaaaacgcagagggatcgagtgtgactgcaccttctctgcgtatgat
gggccattctgcgagagtgaaatttctgcctattttggagctggctcctcagtgatttac
gactttcaacatatcaatgacaccttcagtaagaactccagctcctttgtggctttattt
catgaggatctgacattgacaggagaaatgaccacactgagcttccggaccacagggatg
cccagcttactactctatgtgagctccttctatgaggaatacctttcagttatcctcgcc
ccgaatggaagtttgcaaatcaggtataagctaaacagacaccgagaacctgatgttttt
aactttgattttaaaaacctggctgatggacagcttcaccaggtgaagattaacagagaa
gcagcagtggtctttgtcgaggttaaccagaatgcaaggagacaagtcatcctgtcttca
gggacagaattcaatgctgtcaaatccctcacgttggggacaattttagggcctcccggc
gcggaccgcgacacgcagcgggctggcgcgctaggcttcaccggctgcctctcggcagtg
cgcttcggtcccgccgccccgctgaaggcggcactgcgcccgggcgggcccgcccgggtc
actgtccgcggacacgtggccgccgcgtcccgctgcgcggagggggcggggcccggagct
ccagcgccggaggcgacccgacctctctcaggcggcgcaggtcgttctggatcaacagat
gagggaacgcccttagttaacgcgaacagaagtgactccgcggtcatcggaggtgtgata
gcagttgtgatatttatcttgctctgcatcactgccattgctgtacgcatttatcaacag
aggtggctatctgaaaaaaatgagtcgaatattccaaaaactggagacaatgctgagact
gctctgaaaagtgagctcaacatgcaaagtacagtcagtgaaagccagaaagagtatttc
ttctga
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