Phocoena sinus (vaquita): 116755563
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Entry
116755563 CDS
T07759
Name
(RefSeq) LOW QUALITY PROTEIN: polyadenylate-binding protein 4-like
KO
K13126
polyadenylate-binding protein
Organism
psiu
Phocoena sinus (vaquita)
Pathway
psiu03015
mRNA surveillance pathway
psiu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psiu00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
116755563
09123 Folding, sorting and degradation
03018 RNA degradation
116755563
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psiu03019
]
116755563
03041 Spliceosome [BR:
psiu03041
]
116755563
Messenger RNA biogenesis [BR:
psiu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
116755563
mRNA cycle factors
Stress granule specific factors
116755563
Spliceosome [BR:
psiu03041
]
Complex C
Other components
Complex C specific factors
116755563
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_10
RRM_3
Motif
Other DBs
NCBI-GeneID:
116755563
NCBI-ProteinID:
XP_032491078
LinkDB
All DBs
Position
6:complement(79697508..79699491)
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AA seq
660 aa
AA seq
DB search
MNAAANSYPHGLLHVGAQRSDVTEAILYGKFSPAGPVLSIRVCRDMITCRSQGYADVNFQ
QPADAEWALGTVNFAMIKLKLIRIMWSQRNPSLRKSGVGNVFIKNLDKSIDNKALYDTFS
AFGNILSCKVVCDENGSKAYTFVHFETQEAADKAIEKVNGMLLNDCKVFVGRFKSRKEWE
AELGAKAKEFTNVYFKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEE
HENANKAMEEMNGKEISVKVIFVGCAQKKVERQAVLKRKFEQLKQERISRYQGVNLYIKN
LDDAIDDKKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIAGS
KPLYVALAQRKEERKAHLTNQYMQRVARMRVFPTNAILNQFQPAAGVYFMPAVPQAQGRP
PYYTPNQLAQMRPNPRWQQGGRPQGFQGMPSAILQSGPCPALRHLAPTGNAPASRGLPAT
AQRVGSEWPDCLAMDFGGAGASQQGPTDSCQSGGVPTAGHNLAPRAAVAVAAPQAVAPYK
YASNVCSPHPAIQPLQAPQPVLHVQGQELLTAAMLAAAPPXEQKQMLGKHLFPLIQTMHS
NLAGKITGMLLEIDILELLHMLESPESLRSKVDEAVVVLQAHHTKKEAAQKVGAVDAATS
NT seq
1983 nt
NT seq
+upstream
nt +downstream
nt
atgaacgccgcagccaacagctatccccatggcctcctgcacgtgggtgcccagcgctca
gacgtcaccgaggccatcctgtacggaaagttcagtcctgcggggcctgtgctgtccatc
cgggtctgccgcgatatgatcacctgccgctcccagggttatgccgacgtcaacttccag
cagccggctgacgctgagtgggccttgggtaccgtgaactttgctatgattaagttaaag
ctaatccgtatcatgtggtctcagaggaatccttctttgagaaaatctggcgtgggaaat
gtcttcatcaagaacctggacaaatctatagataacaaggcactttatgatactttttct
gcttttggaaacattctgtcctgcaaggtggtgtgtgatgagaacggctctaaggcttat
acctttgtccacttcgagacccaggaagctgccgacaaggccatcgagaaggtgaacggc
atgctcctcaatgactgcaaagtgtttgtgggcagattcaagtctcgaaaagagtgggaa
gctgagcttggagccaaagccaaggaattcaccaatgtatatttcaaaaactttggggaa
gaggtggatgatgagagtctgaaagagctatttagccagtttggtaagactttaagtgtc
aaggtgatgagagatcccagtgggaaatccaaaggctttggctttgtgagttatgaagaa
cacgagaatgccaataaggccatggaagagatgaatggaaaagaaatcagtgtgaaagtc
attttcgtcggctgtgcacagaagaaagtggaacggcaggccgtgttaaagcgaaaattt
gaacagctgaaacaggagagaattagtcgctatcagggggtgaatctctacattaagaac
ttggatgacgccattgatgataagaagttaaggaaagagttttctccttttggatcaatc
accagtgccaaggtgatgctggaggatgggagaagcaaagggtttggatttgtctgcttc
tcatcccctgaagaggcaaccaaagcagtcacggagatgaacggacgcatcgcgggctcc
aagccactgtacgttgccctggcccagagaaaggaagagagaaaggctcacctgaccaac
caatatatgcagcgggtggccaggatgagagtgttccctacaaatgccatcttaaatcag
ttccagcctgcagctggggtctactttatgccagcagttccacaggctcagggaagacct
ccatattatacacctaaccagttagcacagatgaggcctaatccacgctggcagcaaggt
gggagacctcaaggcttccaaggaatgccaagtgctatactgcagtctgggccttgtcca
gctcttcgccatctggctccaactggtaatgctccggcctctcgcggcctcccagctact
gctcagagagtcgggtctgagtggccggactgcttggctatggactttggtggggctggt
gcctcccagcaagggccaactgacagctgccagtctggaggtgttcccacagctgggcat
aacctagcgcctcgtgctgctgttgctgtcgctgctcctcaggctgttgcaccttacaag
tatgcctccaatgtctgcagccctcaccctgccatccagcccctgcaggcaccccagcct
gtgcttcacgtgcaggggcaggagctgctgaccgccgccatgctggccgcagcacccccc
naggaacagaagcagatgctgggtaaacatttgttcccgctcatccagacgatgcactca
aatctggctgggaagattacggggatgctgctggagattgacatcttggagctgctacac
atgctggagtcccccgagtctctccgctccaaggtggatgaagctgtggtggtcctacag
gctcatcataccaagaaagaagctgcccagaaggtgggcgctgtcgatgctgctacctct
tag
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