Phocoena sinus (vaquita): 116755625
Help
Entry
116755625 CDS
T07759
Symbol
SNAPC4
Name
(RefSeq) snRNA-activating protein complex subunit 4 isoform X1
KO
K09453
snRNA-activating protein complex subunit 4
Organism
psiu
Phocoena sinus (vaquita)
Brite
KEGG Orthology (KO) [BR:
psiu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
psiu03000
]
116755625 (SNAPC4)
03021 Transcription machinery [BR:
psiu03021
]
116755625 (SNAPC4)
Transcription factors [BR:
psiu03000
]
Eukaryotic type
Helix-turn-helix
Tryptophan clusters Myb, Myb-like factors
116755625 (SNAPC4)
Transcription machinery [BR:
psiu03021
]
Eukaryotic type
RNA polymerase III system
Other transcription-related factors
snRNA-activating protein complex (SNAPc)
116755625 (SNAPC4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Myb_DNA-binding
Myb_DNA-bind_6
HTH_Hrp3
Motif
Other DBs
NCBI-GeneID:
116755625
NCBI-ProteinID:
XP_032491243
Ensembl:
ENSPSNG00000003425
LinkDB
All DBs
Position
6:1308136..1335722
Genome browser
AA seq
1385 aa
AA seq
DB search
MDIDAERVRISKEIRELERILDPGSSSVNVDVSESSLDSGPDADSLPDEDSDAAGPLPLE
GERWGEASNDEDDPREKALPEDPETCLQLNMVYQEVIREKLAEVSLLLARNREQQEEVMW
ELVGCKGSRVKDSRTLPSSLYMGHFMKPYFKDKVTGVGPPANEDTRERAAQGIKGFEELL
VTKWKTWEKVLLRKSVVSDRLQRLLQPKLLKLEYLQQKQSSSTSEAERQILEKQAREAEK
EVRDINQLPEESLLGNRLDDHDWEKISNVSFEGSRGAQEIRSFWQNLEHPAINKQEWSAR
ELGQLQAIAAAHGHLHWQRIADELGTGRSAFQCLQTYQQHSPALKRKEWTEEEDRVLSQL
VQEMRVGSHIPYRRIVYYMEGRDSMQLIYRWTKSLDPSLKKGLWAPEEDAKLLRAVAKYG
EQGWFKIREEVPGRSDAQCRDRYLRRLHFGLKKGRWNSKEEEKLIELIEKYGVGRWARIA
SELPHRTGSQCLSKWKMLVRKRQRRRRGRRPPRKVRWSSSSGDSSTASSGDSGDSEPEAA
LGALTGGQALLPTQHVVPDVDLWVPARQSARELWGGGPGSWPGPCGACPRPPEGSDPAQG
GRWEACTTASAPAEPAGQARAASGTQSTSLRGIRCPCSTDARPSSSTGPARQKELRQPRL
CSAAPGPTPGGGGGSGSARPCVRPLWHRTGQRRQGHALQRRLLEHQLLTAVSPWVGKVIL
PRTPRRPAVAHSRADGIRRQLQGAHLASTPVFTLFIQLFQIDTAGCMEVVRERKARPPTL
LQAGARDSPLLQVPSSAQNTPGCLLQSVPAQGAAKKSTCHTGSGGPQACHVESTPQAPPP
APSRPRPKPKTVSELLREKRLREARARKAAQGRAVLLPQVLVSSPMVFQPLAPQGPPVSG
TVLSGPGGPVAAASSALGSWGSAAKERPLTLQAFALAPASTGASKAPAAPAASRVPGLGP
GQVPVSCRPSSLGQSQAPATSRKQGVPEAPPFLTAAPSPVQLPVQPLSLTPALGTHTAAS
TPLPVTWVLTAQGLLSVPVQAMVGLPRPAGTPEPQGLSVTLLPSPTATQAGQGPRFPGQG
RPWQPPTNTDTESDPASRTELLTLPAHPTSQSPAEVDMAHGPGGRSPGETSVPRTSSQAT
PLAGDSEAEPPGTTSGPGEPRRPSGLEGPPPPWRRPEKRALDLCLLSQEGEAAVREWLRG
QRGVRVPPLGNRLSYQPPTLCSLRTLSGLLLRKKALEHRAASLVPSGAAGALQASLGRVR
EQLRDSPAYLLLRVRFLATFALPALLATLSPRGVPTTLSVAMRSSPESDSDDSNPGQPEL
VAGQPGDPASGPQAAAMPAQDFPGPDSHCCCRQEVGLVLDPASLSTPGGRHPARGRRALP
TVAAS
NT seq
4158 nt
NT seq
+upstream
nt +downstream
nt
atggatatagatgctgaaagagtcagaatatcgaaggagatcagggagttggagaggatt
ctggatcccggctcttcgagtgtcaacgtggacgtctcggagtcaagtctcgactcgggt
cctgatgcagattcgctgcccgacgaggactcggacgccgctggcccactgcccttggaa
ggagaaaggtggggggaagccagcaatgatgaggatgaccccagggagaaggcactccct
gaagacccagagacctgcctgcagctgaacatggtctaccaggaggtcatccgggagaag
ctggcagaggtcagcctgctgctggcccggaaccgggagcagcaggaggaagttatgtgg
gaactggtggggtgcaagggctccagggtgaaggacagcaggaccctgccctcgagtctg
tatatggggcacttcatgaagccctacttcaaggacaaggtcaccggagtggggcctcct
gccaacgaagacacgcgggagagggccgcccagggcatcaagggtttcgaggagctcctg
gtgaccaagtggaagacctgggaaaaggtcctgctcagaaagtcagtggtgagcgaccgc
ctgcagcgtctgctccagcccaagttactcaagctcgagtatttgcagcagaaacagagc
agcagcacgagcgaggcggagaggcagatcctggagaagcaggccagggaggcagagaag
gaggtgcgggacatcaatcagctgcccgaggagtccctgctggggaacaggctggacgac
cacgactgggagaagatctccaacgtcagcttcgagggcagccgcggcgcacaggagatt
cgcagcttctggcagaacctcgagcacccggccatcaacaagcaggagtggagcgcgcgc
gagctgggccagctgcaggccatcgcggccgcgcacggccacctgcactggcagaggatc
gccgacgagctggggaccggccgcagcgccttccagtgcctgcagacataccagcagcac
agcccggccctgaagcgcaaggagtggacggaggaggaggaccgcgtgctcagccagctt
gtgcaggagatgcgcgtcggcagccacatcccctaccggaggatcgtctactacatggag
gggagggactccatgcagctcatctaccgctggaccaagagcctggaccccagcctgaag
aagggtctctgggccccagaggaggacgcgaagttgcttcgggcggttgccaagtacggg
gagcagggttggtttaaaatccgggaagaggtgccaggtaggagcgatgcccagtgccga
gatcggtatctcagaaggttacattttggcttgaaaaagggacgatggaattccaaagaa
gaggaaaagttaattgaattaatagaaaaatatggcgtcggtcgctgggcgagaatcgcc
tctgagctaccccatcggacgggctcccagtgcctgagcaagtggaaaatgctggtcagg
aagcggcagcggcgcaggcgggggcggcggccccctcgcaaggtgcggtggagctccagc
agcggggacagcagcaccgccagcagtggggacagcggggactcggagccagaggcagcg
ctgggggccctgacgggtggccaggcgctgctgccaacacagcatgtggtgcctgacgtg
gacctgtgggttcctgcccggcagagcgccagggagctgtggggaggggggcccgggagc
tggccaggaccctgtggtgcctgcccccgccctcctgagggctccgacccggctcagggt
ggccgctgggaagcttgcaccacggcctcagccccagcagagccggcaggccaggcgcgg
gccgcctccgggacccagagcaccagcctgagaggcatcagatgcccgtgctcgacggat
gctcgcccctcgagctccacggggcctgcgcgccagaaggagctgaggcagccgcgcctg
tgcagtgccgccccggggcccacccctggtggcggtggtggcagtggcagtgccaggccc
tgcgtgcggccgctgtggcacaggaccgggcagcggcgccagggacacgccctgcagagg
aggctccttgagcaccagcttctgacggccgtgagcccatgggtgggcaaggtcatcctg
ccacgcactccccggaggcccgccgtggcgcacagtcgagctgacggcatcaggaggcag
ctgcagggcgcccacctggccagcaccccggtgttcaccctcttcattcagttgttccag
atcgacacagctggctgtatggaggtcgttcgggagaggaaggcccggccgcccaccctg
ctccaggctggtgcccgggactcgccactcctgcaggtaccctcgagtgcccagaacacg
ccaggctgcctcctccagagtgtgccggcccaaggagctgcgaagaagagcacctgccac
acggggagcggagggccgcaggcctgccacgtggagtccacgccacaggcacccccgccg
gctccgtccagaccccggcccaagcccaaaaccgtgtctgagctgcttcgggagaagcgg
ctgcgggaggcccgagccaggaaggctgcccagggccgtgcggtcctcctgccccaggtg
ctggtctcctctcctatggtcttccagccgctggccccccaaggccccccagtctccggt
accgtgctctctgggcctgggggccctgtggcggccgcttcaagtgcgttaggctcttgg
ggctcagccgcgaaggagagacccctgacattgcaagcctttgccctcgctccggcctcc
acaggagcctcgaaggccccggctgcccctgctgcctccagggtcccaggtctgggcccc
ggccaggtccctgtgagctgccggccaagcagtctcggacagtctcaggcccctgccacg
tcccggaagcagggcgtgcccgaggcaccaccctttctcactgcagcgcccagccctgtt
cagctgcctgtccagcccctcagcctgacaccagctttgggcacacacacggcagccagc
acccctctgcctgtcacctgggtgctcacagcccaggggctgctctctgtgcctgtgcag
gcgatggtgggccttccgaggccagcagggactcctgagcctcaagggctatcggtgact
ctgctgccctccccaactgcgactcaggcaggccagggccccaggttccctgggcagggc
cgcccttggcagcccccaaccaacacggacacagaatcagaccctgcctccaggacagag
ctcttgacccttccggcgcatcccacatcccagagccctgcggaggtggacatggcccat
ggccctggaggacgctcccctggagagacgtctgtacccaggacgtcctcccaggctacg
cccctggctggcgactctgaagcggagcccccagggaccacctcagggccaggggagccc
aggaggccttcgggcctggaggggccacccccgccctggcgcaggcctgagaagagggcc
ctggacttgtgcctcctctcccaggagggcgaggcagctgtgcgggagtggctgaggggg
cagcggggggtgcgtgtgccccccctgggcaacaggctgtcctaccagcctcccacgctg
tgcagcctgcggacactgtctggcctcctgctccgcaagaaggccttggagcacagagcc
gcctccctggtgcccagtggggcagccggagccctgcaggcctcgctggggcgcgtgcgc
gagcagctccgggacagcccggcctacctgctgctgcgggtgcgcttcctggcgaccttc
gccctccccgcgctcctggccaccctgtccccccgcggcgtgcccaccaccctgtcagta
gccatgaggtccagccccgagagcgacagtgatgacagcaacccgggtcagccagagctt
gtggccgggcagccgggggacccagccagcggtccgcaggcggccgccatgcctgctcag
gacttcccagggccggacagccactgctgctgccgacaggaggtggggctcgtgctggac
ccagcgagcctgtccaccccgggaggccggcacccagcccgcggcagaagggctctgccg
acagtggccgcgtcgtga
DBGET
integrated database retrieval system
