KEGG   Phocoena sinus (vaquita): 116755858
Entry
116755858         CDS       T07759                                 
Symbol
EXOSC2
Name
(RefSeq) exosome complex component RRP4
  KO
K03679  exosome complex component RRP4
Organism
psiu  Phocoena sinus (vaquita)
Pathway
psiu03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:psiu00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    116755858 (EXOSC2)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:psiu03019]
    116755858 (EXOSC2)
Messenger RNA biogenesis [BR:psiu03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Core exosome factors
     116755858 (EXOSC2)
 Prokaryotic type
  Archeal mRNA degradation factors
   Exosome components
    Core exosome
     116755858 (EXOSC2)
SSDB
Motif
Pfam: RRP4_S1 KH_6 ECR1_N ECR1_N_2 RRP40_S1 EXOSC1
Other DBs
NCBI-GeneID: 116755858
NCBI-ProteinID: XP_032491767
Ensembl: ENSPSNG00000012232
UniProt: A0A8C9C742
LinkDB
Position
6:complement(5616177..5631743)
AA seq 293 aa
MAMEMRLPVARKPLSESLGRETKKHLVVPGDTITTDTGFMRGHGTYMGEEKLIASVAGSV
ERVNKLVCVKALKTRYNGEVGDIVVGRITEVQQKRWKVETNSRLDSVLLLSSMNLPGGEL
RRRSAEDELAMRGFLQEGDLISAEVQAVFSDGAVSLHTRSLKYGKLGQGVLVQVSPSLVK
RQKTHFHDLPCGASVILGNNGFVWIYPTPEHKEEDAGGFIANLEPVSLADREVISRLRNC
IVSLATQRMMLYDTSILYCYEASLPHQIKDILKPEIMEEIVMETRQRLLEQEG
NT seq 882 nt   +upstreamnt  +downstreamnt
atggcgatggagatgaggcttcccgtcgctcgcaagcctcttagcgagagcctgggccgt
gagacgaaaaaacacctggtagtgccgggggacacgatcaccacggacacaggcttcatg
cggggccatgggacctatatgggggaagagaagctcattgcatctgtggctggctctgtg
gagagagtaaacaagttggtctgcgtgaaagctttgaaaaccaggtataatggtgaagtg
ggagacattgtagtggggagaatcacagaggttcaacagaagaggtggaaggtggagacc
aactccaggctggattcagtcttgcttctctcatccatgaaccttcccggaggagagctg
aggagaagatctgcagaggatgagctggcgatgagaggtttcttgcaggaaggggacctt
atcagtgctgaggtccaggcagtgttctccgatggagctgtctctctgcacacgaggagt
ctcaaatacgggaaactaggtcagggcgttttggttcaggtctccccctccctggtgaaa
cggcagaagactcacttccatgacttgccatgcggtgcctcagtgattctgggcaacaac
ggcttcgtctggatctacccaacacctgagcacaaagaagaggatgcagggggcttcatt
gcaaacctggagcctgtctcccttgctgatcgagaggtgatctcccggcttcggaactgc
atcgtctcgctggcaactcagagaatgatgctgtatgataccagtatcctgtattgctat
gaagcatcccttccacatcagatcaaagacatcttaaagccagaaataatggaggaaatt
gtgatggaaacacgccagaggcttttagaacaggagggataa

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