Phocoena sinus (vaquita): 116755858
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Entry
116755858 CDS
T07759
Symbol
EXOSC2
Name
(RefSeq) exosome complex component RRP4
KO
K03679
exosome complex component RRP4
Organism
psiu
Phocoena sinus (vaquita)
Pathway
psiu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psiu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
116755858 (EXOSC2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psiu03019
]
116755858 (EXOSC2)
Messenger RNA biogenesis [BR:
psiu03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
116755858 (EXOSC2)
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
116755858 (EXOSC2)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRP4_S1
KH_6
ECR1_N
ECR1_N_2
RRP40_S1
EXOSC1
Motif
Other DBs
NCBI-GeneID:
116755858
NCBI-ProteinID:
XP_032491767
Ensembl:
ENSPSNG00000012232
UniProt:
A0A8C9C742
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Position
6:complement(5616177..5631743)
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AA seq
293 aa
AA seq
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MAMEMRLPVARKPLSESLGRETKKHLVVPGDTITTDTGFMRGHGTYMGEEKLIASVAGSV
ERVNKLVCVKALKTRYNGEVGDIVVGRITEVQQKRWKVETNSRLDSVLLLSSMNLPGGEL
RRRSAEDELAMRGFLQEGDLISAEVQAVFSDGAVSLHTRSLKYGKLGQGVLVQVSPSLVK
RQKTHFHDLPCGASVILGNNGFVWIYPTPEHKEEDAGGFIANLEPVSLADREVISRLRNC
IVSLATQRMMLYDTSILYCYEASLPHQIKDILKPEIMEEIVMETRQRLLEQEG
NT seq
882 nt
NT seq
+upstream
nt +downstream
nt
atggcgatggagatgaggcttcccgtcgctcgcaagcctcttagcgagagcctgggccgt
gagacgaaaaaacacctggtagtgccgggggacacgatcaccacggacacaggcttcatg
cggggccatgggacctatatgggggaagagaagctcattgcatctgtggctggctctgtg
gagagagtaaacaagttggtctgcgtgaaagctttgaaaaccaggtataatggtgaagtg
ggagacattgtagtggggagaatcacagaggttcaacagaagaggtggaaggtggagacc
aactccaggctggattcagtcttgcttctctcatccatgaaccttcccggaggagagctg
aggagaagatctgcagaggatgagctggcgatgagaggtttcttgcaggaaggggacctt
atcagtgctgaggtccaggcagtgttctccgatggagctgtctctctgcacacgaggagt
ctcaaatacgggaaactaggtcagggcgttttggttcaggtctccccctccctggtgaaa
cggcagaagactcacttccatgacttgccatgcggtgcctcagtgattctgggcaacaac
ggcttcgtctggatctacccaacacctgagcacaaagaagaggatgcagggggcttcatt
gcaaacctggagcctgtctcccttgctgatcgagaggtgatctcccggcttcggaactgc
atcgtctcgctggcaactcagagaatgatgctgtatgataccagtatcctgtattgctat
gaagcatcccttccacatcagatcaaagacatcttaaagccagaaataatggaggaaatt
gtgatggaaacacgccagaggcttttagaacaggagggataa
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