Phocoena sinus (vaquita): 116755884
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Entry
116755884 CDS
T07759
Symbol
DDX60
Name
(RefSeq) probable ATP-dependent RNA helicase DDX60
KO
K20103
ATP-dependent RNA helicase DDX60 [EC:
5.6.2.7
]
Organism
psiu
Phocoena sinus (vaquita)
Brite
KEGG Orthology (KO) [BR:
psiu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psiu03019
]
116755884 (DDX60)
Enzymes [BR:
psiu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
116755884 (DDX60)
Messenger RNA biogenesis [BR:
psiu03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Exosome cofactors
116755884 (DDX60)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PIN-like_DDX60
DEAD
ResIII
Helicase_C
Abhydrolase_11
Motif
Other DBs
NCBI-GeneID:
116755884
NCBI-ProteinID:
XP_032491796
Ensembl:
ENSPSNG00000018925
LinkDB
All DBs
Position
6:114423216..114505718
Genome browser
AA seq
1712 aa
AA seq
DB search
MGLEKYLKLLEKMSQLILDQMAEADYDSLLNDFVESEFFLIDGDSLLMTYICEKSLRPEQ
GLHFFYLVECYLVDLIHKGGHFAVVFFKDVEHAYNSIPELLPLRTALILHLQHNTSIDVR
TDFSGCFSQEWKSFLEDSYPYFLIVADESLSHLQVHLFNFLIIQSWAMNVNAVLFSGQAS
DVLRLYAYFMPSKYEHQLIFQKHEKHFENAYKTLMKQLKECRVLALGRLFGNLKWKDMME
EACETISLLKQLWPEGSDIRQVLCVTSCSLSLSLYHHFLENRSKTTDAQKANIQQVETNC
PTLEGVTDWCRLHCLSVAFLLHLPLSQRARTRFITSHWIKDIRTFLTMKKWCEYFILSNT
DVFEFWNLDLTHLSDLSDELLLKNIAFYYENESVQGLHLNLGNGIMKDYEHLWDTVSKLV
TKFDVGKPFPLRTEQFPFLKKDPSPIRDTSKEKMANLGFIPVSCQVVDKFAGDILKDLPF
LTSDDPIVTSLVKQKEFDELVHWHSHRPLSDDYDRTKGQFDEKSRDPRHLRSVQTYHRFQ
QFYGKSLESVTSKFVVPQAIKPRKNFCEPKSKKIQETKAEKITRENKERLFAKEEEKEEK
KWNVLSFSIEEEMKENLNSGIKNLEEFLKSCKSSSVKFRVEMVGITACLRAWKEHCRGEG
ETTKDLSIAVQMMKRIYSVMEKYPELLQEADRQLIARCLRYLGFEELASTLHPAQVTEND
MKEKKKNKYSVGIGPARFQLQYMGQYLVRDERKDPDPRVQDFIPDTWQRELLDVVDKNES
AVIVAPTSSGKTYASYYCMEKVLREGDDGVVVYVAPTKALVNQVAATVENRFSKNLPKGG
SLCGVFTREYRHEALNSQVLVTVPACFEILLLAPHRQAWVKRIRYVIFDEVHCLGGEIGA
EVWEHLLVMIRCPFLALSATISNPEHLTEWLRSIKQYWKQTDSMIEKNTASSRNANCRAS
SHRDYLLRKQSYKVRLVLYAERYNDLEKHVCSVNNHDISFDHFHPCAALTVDHIEKFGFP
SDLTLSPREMIQLYDTMFEFWEGWPRAQELCPEEFVHFKNKIVIRKVDARKYEESLKAEL
TGWVKSGHVNEARMVLRNLRPPSVVSSENMARMFPRLVEKLRQMEKLPALFFLFNLGAVE
RSATSVKRFLEIKQQSRRPLKADKEAYDMESKLRKVRKSLETQKTIDKRSQKNPRNMDQS
LIHEAECANLLKRLEKNLEIPQDCTYADQKAIDAETLQRVFNRVKFSRKGAELKALAARG
IGYHHSSLSAKEKQLVEILFRKGFIRVVTATGTLALGINMPCKSVVFAQNSVYLDALNYR
QMSGRAGRRGQDLGGDVYFFGIPLPKVEKLIKSNVPELRGQFPLSISLILRLMLLASKAD
DPEDAKAKVLSVLKHSLISFKQPRALEMLQLYFLFSLQFLVKEGYLDQEGNPTGFAGLVS
HLHYHEPSNFVFVSFLVRGLFHNLCQPTRKGSKHFSQDVMEKLVLVLANLFGRKYLPAKF
QDATLKFYQSKVFLEDLPEDFKAALDEYNTNVTKDFASFLLIVSKLADMKQEHQLPLSKI
DFSGQECEDSQLVSHLMSCKEGRIAISPFACLSGNSDGSLLHLETSDHVTLRTIGIDSTR
APVLWQQEFDHQGRRMQLNAYALDFYKHGSLTGLVQDNRINEGAAYQLLKDFSLTIQSIS
VSLRELCENEEDNVVLAFEQLSETFKEKFENI
NT seq
5139 nt
NT seq
+upstream
nt +downstream
nt
atgggtttagaaaagtacctgaagcttttggagaaaatgtcacagttgattttggatcag
atggcagaagctgattatgacagtctgttgaatgattttgttgagtctgagtttttcctg
attgatggagactcactgctgatgacatacatctgtgagaaatccttgcggcctgaacag
ggcctgcacttcttttacctggttgaatgctaccttgtggatctaattcataaaggagga
cattttgccgtcgttttcttcaaggatgttgaacacgcatacaacagcatccccgaactg
cttcctctgagaacggcgttaattctccaccttcagcataataccagcattgatgtccga
acagatttttctgggtgcttctcacaagagtggaaaagtttcttggaagacagttaccca
tattttctgatcgttgccgatgaaagcctgagccatctacaagtacaccttttcaacttt
ttaatcattcagtcctgggcgatgaatgtcaatgccgtgctcttctcgggccaagcatcc
gatgtccttcgactttacgcgtactttatgccgagcaagtacgaacaccagttgattttc
cagaagcatgaaaagcactttgagaatgcttataaaaccctgatgaagcaattgaaggaa
tgtagagttttagcattaggacgtctttttggaaatttaaaatggaaagatatgatggaa
gaggcatgtgaaactatttctctgcttaagcaactgtggccggaaggatctgacattcgg
caagttctttgtgttacttcgtgctccttgtctttgagtttataccatcactttttagag
aacagatcgaagaccactgatgctcagaaagctaacatccaacaggtggagacgaactgc
cccaccctggagggggtgacagattggtgtagactgcactgtctcagcgtggcatttctt
ctccacttacctctttcccaaagagcacgtaccagattcatcacttcccactggattaag
gacattcggactttcttaacaatgaaaaagtggtgtgaatacttcatcctaagtaataca
gacgtttttgaattttggaatctggatttaactcacctttccgacttaagtgatgagctt
ttattgaagaatatagcattttactatgaaaatgaaagtgttcaagggctacatttgaat
ttgggaaacggcattatgaaagattatgaacatctctgggatactgtatcaaagttggtc
acaaagtttgatgttggaaagccatttcctctgagaacagaacaatttccttttcttaaa
aaggatccatcaccaatcagagatacctccaaggaaaagatggctaatttgggttttatt
ccagtgtcatgtcaggtggttgataagtttgccggggacattttgaaagatttgcctttc
ctaacgagcgatgatcctattgtaacttcactggtcaagcagaaagaatttgatgagctt
gtgcactggcattcccacagaccccttagtgatgattatgacaggacaaagggtcagttt
gatgaaaaatctagagatcctcgtcatcttagatctgtgcaaacgtatcatcgttttcaa
caattttatgggaagtcattagaatcagtcacttcaaaatttgttgtacctcaagctatc
aagccaaggaagaatttctgtgaacccaagagcaaaaagatacaggagaccaaggctgaa
aaaattactagagagaataaggagaggctatttgccaaggaggaagaaaaagaagagaaa
aaatggaatgttctgtccttttctattgaggaggaaatgaaagagaatttaaactctgga
ataaagaacctagaagagtttttgaaatcatgtaaaagtagctcagtgaaatttcgagtt
gaaatggtggggattactgcctgcttgagagcgtggaaagaacattgccgtggtgaaggt
gaaaccacaaaagatttaagtatagctgttcaaatgatgaaaaggatctactccgtgatg
gaaaaatacccagaacttttgcaagaggcagatcggcaactcatagccagatgccttagg
tacttaggatttgaggagttggcaagtactttgcatccagcgcaggtcacagaaaatgac
atgaaggagaagaagaagaacaaatactcagttggcattgggccggctcggtttcagctg
cagtacatgggccagtatttggtacgagatgagaggaaagatccagaccccagagtccag
gactttattcctgacacctggcagcgagagctcttggacgtcgtggacaagaatgagtct
gcggtcatagtggcccccacgtcctcagggaagacctacgcctcctactactgcatggag
aaggtgctacgggagggcgacgatggggtggtcgtgtacgtggcccccaccaaggccctt
gtcaatcaggtggcagcaaccgttgagaatcgtttcagcaaaaatctgccaaaaggtgga
tctctgtgcggtgtttttacacgggagtatcgtcatgaggctctaaactctcaggtactt
gtcacagtgcctgcctgctttgaaattctgctgctagctccgcatcgccaggcgtgggtg
aaaaggatcagatatgttatatttgatgaggtccactgtcttggtggagaaattggagca
gaagtctgggagcatctccttgtcatgatccgctgtcccttcctggccctttctgctacc
atcagcaacccggagcatctcaccgagtggctacgatccataaaacagtactggaaacaa
acagacagtatgatagaaaaaaatactgcttcttcaagaaatgccaactgccgcgccagt
tctcaccgagactacttactgaggaagcagtcgtataaagtgagacttgtgctctatgca
gagagatacaatgatttagagaagcacgtatgttcagtaaacaatcatgacatctccttt
gaccattttcacccttgcgctgcgctgaccgtggaccatattgaaaagtttggattccct
tctgatcttaccctttcgcctcgagaaatgatccagctttatgataccatgtttgaattc
tgggaaggttggcccagggctcaggagttgtgtccggaggaattcgttcattttaagaat
aaaatagtcattcgaaaggtggatgctagaaagtatgaagagagcctaaaggcagaactg
acgggctgggtgaagagcggtcacgtcaacgaggccagaatggtcctgaggaatcttcgt
cctccttcggttgttagttcagaaaacatggcacgtatgtttccacgtcttgttgaaaag
ctgagacaaatggagaagttacctgcactgttttttttatttaatttaggggctgtagag
agaagcgctacaagtgtgaaaaggttcctagagataaagcaacagagcagaaggcccctc
aaggctgataaggaggcctatgacatggagagcaaacttcgaaaagttagaaaatccctt
gagacacagaagaccatagataaaagaagccagaaaaatcccagaaatatggatcaaagc
ctaatccatgaagctgaatgtgctaatctcctcaagcgtcttgagaagaacttggagatc
cctcaggactgcacatatgctgatcagaaggccatagatgctgagactttgcagagggtg
tttaaccgagtgaaattctcaaggaaaggcgccgaactgaaggctttggcagcaagaggg
attggatatcatcacagctctttgagcgccaaagaaaagcagttagttgagattcttttt
aggaaaggatttattagggtggtgaccgccacggggacacttgctttaggaatcaacatg
ccttgtaaatctgtggtttttgctcaaaactcagtctatctggatgctttaaactacaga
cagatgtctggacgggccggacgacgaggtcaagacctggggggagatgtgtatttcttt
ggtattccactccctaaagtcgaaaagctcatcaaatccaacgtccctgaactgagaggg
cagttccctctcagcatctccctgatcctgagactcatgcttctggcttccaaggcagat
gaccccgaggacgctaaggcaaaggttctgtcggtgctcaagcactcactgatctccttc
aagcagccccgggcactggagatgctgcaactgtactttctgttctccctgcaattcctg
gtcaaggagggctatttagatcaagaaggtaatcctacaggctttgctggacttgtgtca
catctgcattatcacgagccttccaattttgttttcgtcagttttcttgtaagaggcctt
ttccataatctctgtcagccaaccaggaaaggctcgaaacatttttctcaagatgttatg
gaaaagctagtgttagtattggcaaatctgtttggcagaaaatatcttccagcaaagttc
caagatgctacgctcaagttttatcaatccaaggtgtttctggaggatctccctgaggac
ttcaaggccgctctagatgagtataacacaaacgtgacaaaggactttgcctctttccta
ctgattgtttccaaactggctgatatgaaacaagaacatcagctcccattgtcaaaaata
gatttctcaggtcaagagtgtgaagactcacaacttgtgtctcacttgatgagctgcaag
gaaggaagaatagccatttctccgtttgcctgtctctctgggaactctgatggcagtttg
cttcatctagaaacttcagaccatgtcactctgcgcaccatcggcattgatagcactcgg
gctcctgtgctgtggcaacaggaatttgatcaccaaggaagaagaatgcagctcaatgct
tacgcactcgatttctataaacacggttccttgacaggattggtccaggacaacaggata
aatgaaggagctgcttatcagttgttgaaagatttttccctcaccattcaatctatcagt
gtttctttgcgtgaactatgtgaaaatgaagaggacaacgtggtcttagcatttgaacaa
ctgagtgaaacctttaaagaaaaatttgagaacatttga
DBGET
integrated database retrieval system
