KEGG   Phocoena sinus (vaquita): 116755932
Entry
116755932         CDS       T07759                                 
Symbol
PRPF4
Name
(RefSeq) U4/U6 small nuclear ribonucleoprotein Prp4 isoform X1
  KO
K12662  U4/U6 small nuclear ribonucleoprotein PRP4
Organism
psiu  Phocoena sinus (vaquita)
Pathway
psiu03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:psiu00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    116755932 (PRPF4)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:psiu03041]
    116755932 (PRPF4)
Spliceosome [BR:psiu03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U4/U6 snRNP specific factors
    116755932 (PRPF4)
SSDB
Motif
Pfam: Beta-prop_WDR5 Beta-prop_WDR3_1st WD40_Prp19 WD40 Beta-prop_THOC3 WD40_CDC20-Fz Beta-prop_WDR3_2nd WD40_Gbeta WD40_WDHD1_1st Beta-prop_EML_2 Beta-prop_CAF1B_HIR1 EIF3I WDR55 Beta-prop_WDR36-Utp21_2nd Beta-prop_WDR90_POC16_2nd Beta-prop_WDR75_1st Beta-prop_TEP1_2nd WD40_MABP1-WDR62_2nd Beta-prop_WDR36-Utp21_1st PRP4 ANAPC4_WD40 Beta-prop_EML WDR90_beta-prop_4th WD40_MABP1-WDR62_1st NBCH_WD40 Beta-prop_TEP1_C Beta-prop_Aladin Beta-prop_DCAF4 Beta-prop_SCAP Beta-prop_WDR41 Beta-prop_EIPR1 Beta-prop_IFT122_1st Beta-prop_Vps41 WD_LRWD1 Beta-prop_IFT140_1st WD40_like Ge1_WD40 WD40_RFWD3 Beta-prop_WDR35_TULP_N Beta-prop_WDR11_1st
Other DBs
NCBI-GeneID: 116755932
NCBI-ProteinID: XP_032491913
Ensembl: ENSPSNG00000009749
LinkDB
Position
6:complement(20691530..20707252)
AA seq 523 aa
MASSRASSAVQATKTKASDDLVAPVVKKPHIYYGSLEEKERERLAKGESGILGKEGLKAG
IEAGNINITSGEVFEIEDHISERQAEVLAEFERRKRARQINVSTDDSEVKACLRALGEPI
TLFGEGPAERRERLRNILSVVGTDALKKTRKDDEKSKKSKEEYQQTWYHEGPNSLKVARL
WIANYSLPRAMKRLEEARLHKEIPETTRTSQMQELHKSLRSLNNFCSQIGDDRPISYCHF
SPNSKMLATACWSGLCKLWSVPDCNLLHTLRGHNTNVGAIVFHPKSTVSLDQKDVNLASC
AADGSVKLWSLDSDEPVADIEGHTVRVARVMWHPSGRFLGTTCYDRSWRLWDLEAQEEIL
HQEGHSMGVYDIAFHQDGSLAGTGGLDAFGRVWDLRTGRCIMFLEGHLKEIYGINFSPNG
YHVATGSGDNTCKVWDLRQRRCVYTIPAHQNLVTGVKFEPIHGNFLLTGAYDNTAKIWTH
PGWSPLKTLAGHEGKVMGLDISSSGQLIATCSYDRTFKLWMAE
NT seq 1572 nt   +upstreamnt  +downstreamnt
atggcctcctcacgagcttcctccgcggtacaggcaaccaaaactaaggcatctgatgac
ttagtcgctcctgttgtgaagaaaccacacatctattatggaagtttggaagagaaggag
agggagcgcctggccaaaggagaatctgggattttgggaaaagaaggacttaaagcagga
attgaagcagggaacattaacataacctctggagaagtgtttgaaattgaagaccacatc
agtgagcgacaggccgaggtgttagctgagtttgagaggaggaagcgagcccggcaaatc
aatgtttctacagatgactcagaggtcaaggcttgccttagggccttgggggaacccatc
acactttttggagagggtcctgctgaaagaagagaaaggttaagaaatatcctttcagtg
gtcggtactgatgccttaaaaaagaccagaaaagatgatgagaaatcaaagaagtccaaa
gaagagtatcagcaaacctggtaccatgaaggaccaaacagcctgaaggttgctagactg
tggattgctaattactcactgcccagggcaatgaaacgcttggaagaggcccgtcttcat
aaagagattcctgagacaacgagaacctcccagatgcaagaactgcacaaatctctccgg
tctttgaataatttctgcagtcagattggggatgatcggcctatctcctactgtcacttt
agtcccaattccaaaatgctggccacagcttgttggagtgggctttgcaagctctggtct
gttcctgattgcaacctcctccatactcttcgaggccataacacaaacgtgggagcaatt
gtattccatccaaaatccactgtctccttggaccaaaaagatgtcaatctggcctcttgt
gctgctgatggttctgtgaagctttggagccttgacagtgatgaaccagtggcagatatt
gaaggccatacagtgcgtgtggcccgtgtaatgtggcatccatcaggacgtttcttaggt
accacctgctatgaccgttcatggcgcttatgggatttggaggctcaagaggaaatcctg
catcaggaaggccacagcatgggtgtgtatgacattgccttccatcaagatggctctttg
gctggcactgggggactggatgcatttggtcgagtttgggacctgcgtacaggacgttgc
atcatgttcctggaaggtcacctgaaggaaatctatggaataaatttctcccccaatggc
taccacgttgcaactggcagtggtgacaacacctgcaaagtgtgggaccttcgacagcgg
cgttgtgtctataccattcctgcccaccagaacttagtgactggtgtcaagtttgagcct
atccatgggaatttcttgcttactggtgcctatgataacacagccaagatctggacccac
ccaggctggtcgccactgaagactctggccggccacgaaggcaaagtgatgggcctagac
atttcttccagcgggcagctcatagccacttgctcatatgacaggaccttcaagctctgg
atggctgaatag

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