Phocoena sinus (vaquita): 116755979
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Entry
116755979 CDS
T07759
Symbol
VCP
Name
(RefSeq) transitional endoplasmic reticulum ATPase isoform X1
KO
K13525
transitional endoplasmic reticulum ATPase
Organism
psiu
Phocoena sinus (vaquita)
Pathway
psiu04137
Mitophagy - animal
psiu04141
Protein processing in endoplasmic reticulum
psiu05014
Amyotrophic lateral sclerosis
psiu05022
Pathways of neurodegeneration - multiple diseases
psiu05134
Legionellosis
Brite
KEGG Orthology (KO) [BR:
psiu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
116755979 (VCP)
09140 Cellular Processes
09141 Transport and catabolism
04137 Mitophagy - animal
116755979 (VCP)
09160 Human Diseases
09171 Infectious disease: bacterial
05134 Legionellosis
116755979 (VCP)
09164 Neurodegenerative disease
05014 Amyotrophic lateral sclerosis
116755979 (VCP)
05022 Pathways of neurodegeneration - multiple diseases
116755979 (VCP)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psiu03019
]
116755979 (VCP)
03009 Ribosome biogenesis [BR:
psiu03009
]
116755979 (VCP)
04131 Membrane trafficking [BR:
psiu04131
]
116755979 (VCP)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
psiu04147
]
116755979 (VCP)
Messenger RNA biogenesis [BR:
psiu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Ran-mediated transport factors
116755979 (VCP)
Ribosome biogenesis [BR:
psiu03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
116755979 (VCP)
Membrane trafficking [BR:
psiu04131
]
SNARE
SNARE associated proteins
Others
116755979 (VCP)
Autophagy
Aggrephagy
Other aggrephagy associated proteins
116755979 (VCP)
Exosome [BR:
psiu04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
116755979 (VCP)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA
AAA_lid_3
CDC48_N
RuvB_N
AAA_16
CDC48_2
AAA_5
AAA_33
AAA_2
AAA_22
TIP49
AAA_14
NPHP3_N
RNA_helicase
Vps4_C
AAA_28
nSTAND3
Parvo_NS1
Mg_chelatase
AAA_17
ATPase_2
IstB_IS21
AAA_18
AAA_7
ATPase
DUF815
ABC_tran
AAA_24
NB-ARC
TsaE
ResIII
NACHT
Sigma54_activat
Viral_helicase1
SLFN-g3_helicase
KAP_NTPase
DUF3944
Zot
Motif
Other DBs
NCBI-GeneID:
116755979
NCBI-ProteinID:
XP_032492016
Ensembl:
ENSPSNG00000019247
UniProt:
A0A8C9CU59
LinkDB
All DBs
Position
6:37627043..37641025
Genome browser
AA seq
806 aa
AA seq
DB search
MASGADSKGDDLSTAILKQKNRPNRLIVDEAINEDNSVVSLSQPKMDELQLFRGDTVLLK
GKKRREAVCIVLSDDTCSDEKIRMNRVVRNNLRVHLGDVISIQPCPDVKYGKRIHVLPID
DTVEGITGNLFEVYLKPYFLEAYRPIRKGDIFLVRGGMRAVEFKVVETDPSPYCIVAPDT
VIHCEGEPIKREDEEESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRG
ILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAI
IFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRF
GRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAAL
QAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQSNPSALRETVVEVPQVTWEDIG
GLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFI
SIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRV
INQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKAN
LRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRESIESEIRRERERQTNPSAM
EVEEDDPVPEIRRDHFEEAMRFARRSVSDNDIRKYEMFAQTLQQSRGFGSFRFPSGNQGG
AGPSQGSGAGTGGSVYTEDNDDDLYG
NT seq
2421 nt
NT seq
+upstream
nt +downstream
nt
atggcctccggagctgattcaaaaggtgatgatttatcaacagccatccttaaacagaag
aaccgtcccaatcggttaattgttgatgaagccatcaatgaggacaacagtgtggtatcc
ttgtcccagcccaagatggatgagctgcagttgttccgaggtgacacagtgttgctgaaa
ggaaagaagaggcgggaagctgtgtgcattgtgctttctgatgacacatgttctgatgag
aagattcgaatgaatagagttgttcggaataaccttcgcgtacacctgggggatgtcatc
agcatccagccatgccctgatgtgaaatacggcaaacgtatccatgtactacccatcgat
gacacggtggaaggcatcactggcaatctctttgaggtttaccttaagccgtacttcctg
gaagcttatcgacccatccggaaaggagacattttccttgtccggggtggaatgcgtgcc
gtagagttcaaagtagtggagacagatcccagtccttactgtattgttgctccagacaca
gtgattcactgtgaaggggagcctatcaaacgagaggatgaggaagagtctttgaatgaa
gtgggctatgatgacattggtggctgccggaagcagctagctcagataaaggagatggtg
gagctgcccctgagacatcctgctctctttaaggcaattggtgtgaagcctcctcgggga
atcctgctctatggacctccagggactggaaagaccctgattgctcgagctgtggcaaat
gagactggcgccttcttctttttgatcaatggtcctgagatcatgagcaagttggctggt
gagtctgagagcaaccttcgtaaagcctttgaagaggctgagaagaatgctcctgctatt
attttcattgatgagttggatgccattgctcccaaaagagagaaaacccatggggaggta
gagcggcgtatcgtatcacagttgttgaccctcatggatggcctaaagcagagagcccat
gtcattgttatggcagcaaccaatagacccaacagcattgacccagccctacgacgattt
ggtcgctttgacagggaggtggatattggaatccctgatgctacaggacgcttggaaatt
cttcagatccacaccaagaacatgaagctggcagatgatgtggaccttgagcaggtagcc
aacgaaactcatgggcatgtgggcgctgacttagcagccctgtgctcggaggctgctctg
caagccatccgcaagaagatggacctcattgacctagaggacgagaccatcgatgctgag
gtcatgaactccctggcagttactatggatgacttccgatgggccctgagccagagcaac
ccgtcagcactgcgggaaactgtggtagaggtaccacaggtgacctgggaggacattggg
ggcctggaggatgtcaaacgtgagcttcaggagctggtccagtatcctgtggagcaccca
gacaaattcctcaagtttggtatgacaccttccaagggagtactgttctatggacctcct
ggttgtgggaaaaccttgctggccaaagccattgctaatgagtgccaggccaacttcatc
tccatcaagggtcctgagctgctcaccatgtggtttggggagtctgaggccaacgtcaga
gaaatctttgacaaggcccgccaagctgccccctgtgtactgttctttgatgagctggat
tcgattgccaaggcccgtggtggcaacattggagatggtggtggggctgctgaccgagtc
atcaaccagatcctgacagaaatggatggcatgtccacaaaaaaaaatgtgtttatcatt
ggcgctaccaaccggcctgacatcattgatcctgccattctgcgacctggccgccttgat
cagctcatctacatcccacttcctgatgagaagtcccgtgttgccattctcaaggccaac
ctgcgcaagtccccagttgccaaggatgtggatttggagttcctggctaagatgactaat
ggcttctctggagctgacttgacagagatttgccaacgtgcttgcaagctggccatccgt
gaatcgatcgagagtgagatcaggcgagaacgggagaggcagaccaacccatcagccatg
gaggtagaagaggatgatccagtgcctgagatccgccgagatcactttgaggaagccatg
cgctttgcccgccgttctgtcagtgataatgacatcaggaagtatgagatgtttgctcag
acccttcaacagagtcggggctttggcagcttcagattcccttcaggaaaccaaggtgga
gctggccccagtcagggcagtggtgctggcacaggtggcagtgtgtacacggaagataac
gatgatgacctgtacggctaa
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