KEGG   Phocoena sinus (vaquita): 116756307
Entry
116756307         CDS       T07759                                 
Symbol
WDR33
Name
(RefSeq) pre-mRNA 3' end processing protein WDR33 isoform X1
  KO
K15542  polyadenylation factor subunit 2
Organism
psiu  Phocoena sinus (vaquita)
Pathway
psiu03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:psiu00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    116756307 (WDR33)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:psiu03019]
    116756307 (WDR33)
Messenger RNA biogenesis [BR:psiu03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Cleavage and polyadenylation specificity factor (CPSF) complex
     116756307 (WDR33)
SSDB
Motif
Pfam: Beta-prop_WDR5 WD40 Beta-prop_THOC3 Beta-prop_WDR3_1st WD40_CDC20-Fz WD40_Prp19 WD40_WDHD1_1st Beta-prop_EML_2 Beta-prop_WDR3_2nd Beta-prop_EML Beta-prop_CAF1B_HIR1 WD40_Gbeta WDR55 Beta-prop_TEP1_2nd EIF3I Beta-prop_IFT140_1st Beta-prop_WDR36-Utp21_2nd Beta-prop_Aladin Beta-prop_WDR90_POC16_2nd WD40_MABP1-WDR62_2nd Beta-prop_WDR36-Utp21_1st ANAPC4_WD40 Beta-prop_RIG_2nd Beta-prop_WDR19_1st Beta-prop_EIPR1 WDR90_beta-prop_4th Beta-prop_WDR75_1st Beta-prop_Vps41 Beta-prop_IFT122_1st Collagen eIF2A WD40_RFWD3 Beta-prop_SCAP WD40_MABP1-WDR62_1st Beta-prop_WDR35_TULP_N Beta-prop_DCAF4 Beta-prop_HPS5 Beta-prop_WDR11_2nd Beta-prop_WDR41 Ge1_WD40 PEP5_VPS11_N
Other DBs
NCBI-GeneID: 116756307
NCBI-ProteinID: XP_032492432
Ensembl: ENSPSNG00000021710
LinkDB
Position
7:complement(109861075..109963111)
AA seq 1371 aa
MATEIGSPPRFFHMPRFQHQAPRQLFYKRPDFAQQQAMQQLTFDGKRMRKAVNRKTIDYN
PSVIKYLENRIWQRDQRDMRAIQPDAGYYNDLVPPIGMLNNPMNAVTTKFVRTSTNKVKC
PVFVVRWTPEGRRLVTGASSGEFTLWNGLTFNFETILQAHDSPVRAMTWSHNDMWMLTAD
HGGYVKYWQSNMNNVKMFQAHKEAIREASFSPTDNKFATCSDDGTVRIWDFLRCHEERIL
RGHGADVKCVDWHPTKGLVVSGSKDSQQPIKFWDPKTGQSLATLHAHKNTVMEVKLNLNG
NWLLTASRDHLCKLFDIRNLKEELQVFRGHKKEATAVAWHPVHEGLFASGGSDGSLLFWH
VGVEKEVGGMEMAHEGMIWSLAWHPLGHILCSGSNDHTSKFWTRNRPGDKMRDRYNLNLL
PGMSEDGVEYDDLEPNSLAVIPGMGIPEQLKLAMEQEQMGKDESNEIEMTIPGLDWGMEE
VMQKDQKKVPQKKVPYAKPIPAQFQQAWMQNKVPIPAPNEVLNDRKEDIKLEEKKKTQAE
IEQEMATLQYTNPQLLEQLKIERLAQKQAEQIQPPPSSGTPLLGPQPFPGQGPMSQIPQG
FQQPHPSQQMPMNMAQMGPPGPQGQFRPPGPQGQMGPQGPPLHQGGGGPQGFMGPQGPQG
PPQGLPRPQDMHGPQGMQRHPGPHGPLGPQGPPGPQGTSGPQGHMGPQGPPGPQGHIGPQ
GPPGPQGHLGPQGPGTQGMQGPPGPRGMQGPPHPHGMQGGPGSQGIQGPVSQGPLMGLNP
RGMQGPPGPRENQGPAPQGMMLGHPPQEMRGPHPPSGLLGHGPQEMRGPQEMRGMQGPPP
QGSMMGPPQELRGPPGSQGQQGPPQGSLGPPPQGGMQGPPGPQGQQNPARGPHPSQGPIP
FQQQKTALLGDGPRAPFNQEGQNAGPPPLIPGLGQQGAQGRIPPLNPGQGPGPNKGTKGR
RESRESGPAGPHWINQRHRPSPGATSLLICSGDSRGPPNHHMGPMSERRHEQSSGPEHGP
ERGPFRGGQDCRGPPDRRGPHPDFPDDFSRPDDFHPDKRFGHRLREFEGRGGPLPQEEKW
RRGGPGPPFPPDHREFSEGDGRGAARGPPGAWEGRRPGDERFPRDPEDPRFRGRREESFR
RGAPPRHEGRAPPRGRDGFPGPEDFGPEENFDASDETARGRDLRGRGRGAPRGGRKGLLP
TPDEFPRFEGGRKPDSWDGNREPGPGHEHFRDAPRPDHPPHDGHSPASRERSSSLQGMDM
ASLPPRKRPWHDGPGTSEHREMEAPGGPSEDRGGKGRGGPGPSQRVPKSGRSSSLDGDHH
DGYHRDEPFGGPPGSGTPSRGGRSGSNWGRGSNMNSGPPRRGASRGGGRGR
NT seq 4116 nt   +upstreamnt  +downstreamnt
atggctacagaaattggttctcctcctcgttttttccatatgccaaggttccaacaccag
gcacctcgacagctattttataagcgacctgattttgcacagcagcaagcaatgcaacag
cttacctttgatggaaaacgaatgagaaaagcagtaaaccgaaaaaccatagactataat
ccatctgtaattaagtatttggagaatagaatatggcaaagagaccagagagatatgcgg
gcaattcagcctgatgcaggttattataatgatctggttccacctattgggatgttgaat
aatcctatgaatgcagtaacaacaaagtttgttcgaacatcaacaaataaagtaaagtgt
ccagtatttgttgttaggtggactccagaaggaagacggttagtcactggagcctctagt
ggagagttcaccttgtggaatggactcactttcaattttgaaacaatattacaggctcac
gatagcccagtgagagccatgacttggtcacataatgacatgtggatgttgacagcggac
cacggaggatatgtgaaatattggcagtcgaacatgaacaacgtcaagatgttccaggca
cataaggaggcgattagagaggccagtttctcacccacggataataaatttgctacatgc
tctgatgacggcactgttagaatctgggactttcttcgttgccatgaggaaagaattctc
cgagggcacggtgctgatgtgaagtgtgtagactggcatccaacaaaagggttagttgtt
tcaggaagtaaagatagtcaacagccaatcaagttctgggatcccaagactgggcagagt
cttgcaacacttcatgcccataaaaacacagtaatggaagtgaaattaaatctcaatggt
aactggctactcacagcatcacgcgaccacctctgtaaacttttcgacatccgaaacctg
aaagaagagcttcaagtcttccgaggtcataagaaagaagctacagctgtggcctggcat
cctgttcatgaaggactttttgccagtggagggtctgatggttctttgttattctggcat
gttggggtagagaaagaagtgggtgggatggagatggcccatgaaggaatgatttggagt
ctggcttggcatcctcttggacatattctctgctcaggctcaaatgaccatactagcaaa
ttttggacccgaaaccggccaggtgataaaatgcgagatcgatacaatctaaacctgttg
cctggaatgtctgaagatggagtggaatacgatgaccttgaacctaatagcctggcagta
attccagggatgggaataccagaacaactaaaattagctatggaacaagaacagatgggg
aaagatgaatcaaacgaaattgaaatgacaattccaggtttagattggggaatggaggag
gtgatgcagaaggatcagaaaaaagtacctcagaagaaagttccttacgcaaaacctatt
cctgctcagtttcagcaggcttggatgcaaaataaagtcccaattcctgccccaaacgag
gtattgaatgacagaaaagaagacattaaattggaagagaagaaaaaaacacaagcagaa
atcgaacaagagatggccacattacagtatactaacccacagcttctggagcaacttaaa
attgaaagacttgcacagaaacaggctgagcaaattcagcctcctccttcatctggcacc
cctctcctgggaccccagccctttccaggacaaggtccaatgtctcagattcctcaaggt
tttcaacagcctcatccatctcagcagatgccaatgaacatggctcaaatggggcctcca
ggtccacagggacagtttaggccccctggaccccagggacaaatgggaccacagggtcct
ccactgcatcagggaggtggggggccacaaggattcatgggaccacaagggccccagggc
ccaccccaggggttgccgaggcctcaggacatgcatgggccccaaggaatgcaaaggcat
cctggacctcatggccctttgggacctcaaggaccacctggaccacagggcacttctggt
cctcaaggtcatatgggtcctcagggcccacctggcccacaaggtcacataggcccccaa
ggcccacctggtccccagggtcacttgggccctcagggacctggtactcaaggtatgcag
ggaccacctggtcccagaggaatgcaaggacctccccatcctcatgggatgcaaggtggg
ccagggtctcaagggatccaaggtcctgtgtctcagggacctctgatgggattgaatcca
agaggaatgcagggtcctccaggcccccgagagaaccagggtcctgctccccaagggatg
atgctgggccacccgcctcaagagatgagaggacctcatcctccaagtggactgctggga
catggccctcaggagatgcgaggtcctcaggagatgcgaggcatgcaggggcctccaccc
caaggatcaatgatgggccctccccaggaattgcgagggcctccaggctcacaaggtcag
caggggccgccccagggctctttgggacctccaccccagggtggcatgcaagggccccct
ggacctcagggacagcagaacccggcaagagggccacatccatctcaagggccaatacca
ttccagcagcagaaaacagctctgctaggtgatgggccccgggcccccttcaaccaggaa
ggacagaacgcaggccccccacccttgataccaggcctagggcagcagggagcacaaggt
cgcatccctcctcttaatcctggacaaggacctggccctaacaaagggaccaaagggaga
agggagagccgagaaagtggccctgccggcccccactggattaaccagcgccaccgcccg
tcaccaggggccacatcccttctgatttgtagtggtgactcacgtggccctccgaaccat
cacatgggcccaatgtcagagagacggcacgagcagagcagcggtcccgagcacggtccc
gagaggggtcctttccggggcggccaggactgcaggggtccccctgataggcgcggccct
caccccgacttccccgatgacttcagcagaccagatgacttccaccccgacaagcgcttt
ggccaccggttacgtgaatttgaggggcgaggaggacctttaccgcaagaagagaagtgg
aggcgtgggggccctgggcctccgtttcctcctgatcacagggagttcagtgagggggat
ggccggggcgcggcccggggccctccaggggcgtgggaaggccgcagacctggagacgag
cgcttcccccgggatcctgaggacccacggtttcgagggcgcagagaagaaagcttcaga
cgaggagcccccccaagacatgagggccgtgctccccccagaggaagggatggttttcct
ggtcccgaagactttggaccagaggagaattttgatgcttctgatgaaacagcccgagga
agagatctcagaggtcgaggtcggggtgccccacgaggaggaaggaagggtttacttccc
actcctgatgagttccctcgctttgaaggaggtcggaaaccagactcctgggatggaaat
agagagccagggccaggtcatgaacatttccgtgatgctccccgccctgaccatccccct
cacgacggtcattccccagctagcagagaacggtcctcttctctccaaggcatggacatg
gcatccctaccaccccgaaagcgcccctggcatgatgggccaggaacctctgagcataga
gaaatggaagccccagggggtccttctgaggatcgaggaggcaaaggccgagggggcccc
ggaccttctcagagagtgccaaagtccggacgttccagctccttggatggagatcaccac
gatggataccacagagatgaaccttttgggggccctccaggcagtggtaccccttctaga
gggggccggagtggcagtaactggggtagagggagtaacatgaactctggcccgccaagg
cgaggagcttcaagggggggtggaaggggtcggtag

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