Phocoena sinus (vaquita): 116756400
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Entry
116756400 CDS
T07759
Symbol
COL4A4
Name
(RefSeq) collagen alpha-4(IV) chain isoform X1
KO
K06237
collagen type IV alpha
Organism
psiu
Phocoena sinus (vaquita)
Pathway
psiu04151
PI3K-Akt signaling pathway
psiu04382
Cornified envelope formation
psiu04510
Focal adhesion
psiu04512
ECM-receptor interaction
psiu04820
Cytoskeleton in muscle cells
psiu04926
Relaxin signaling pathway
psiu04933
AGE-RAGE signaling pathway in diabetic complications
psiu04974
Protein digestion and absorption
psiu05146
Amoebiasis
psiu05165
Human papillomavirus infection
psiu05200
Pathways in cancer
psiu05222
Small cell lung cancer
Brite
KEGG Orthology (KO) [BR:
psiu00001
]
09130 Environmental Information Processing
09132 Signal transduction
04151 PI3K-Akt signaling pathway
116756400 (COL4A4)
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
116756400 (COL4A4)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
116756400 (COL4A4)
09142 Cell motility
04820 Cytoskeleton in muscle cells
116756400 (COL4A4)
09150 Organismal Systems
09152 Endocrine system
04926 Relaxin signaling pathway
116756400 (COL4A4)
09154 Digestive system
04974 Protein digestion and absorption
116756400 (COL4A4)
09158 Development and regeneration
04382 Cornified envelope formation
116756400 (COL4A4)
09160 Human Diseases
09161 Cancer: overview
05200 Pathways in cancer
116756400 (COL4A4)
09162 Cancer: specific types
05222 Small cell lung cancer
116756400 (COL4A4)
09172 Infectious disease: viral
05165 Human papillomavirus infection
116756400 (COL4A4)
09174 Infectious disease: parasitic
05146 Amoebiasis
116756400 (COL4A4)
09167 Endocrine and metabolic disease
04933 AGE-RAGE signaling pathway in diabetic complications
116756400 (COL4A4)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
psiu04147
]
116756400 (COL4A4)
00536 Glycosaminoglycan binding proteins [BR:
psiu00536
]
116756400 (COL4A4)
Exosome [BR:
psiu04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
116756400 (COL4A4)
Glycosaminoglycan binding proteins [BR:
psiu00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
116756400 (COL4A4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
116756400
NCBI-ProteinID:
XP_032492540
Ensembl:
ENSPSNG00000011263
LinkDB
All DBs
Position
7:11546984..11693874
Genome browser
AA seq
1685 aa
AA seq
DB search
MALVRRSFRWIKPLATDSWLLVLLLFSVQHAYGGEKKFIGPCGGRDCSLCQCFPEKGSRG
QPGPPGPQGPIGPLGPPGPIGIPGEKGMRGDSGLPGAAGDKGDKGPTGVPGFSGLDGIPG
HPGPPGSRGKSGVDGYNGSRGAPGFPGERGAPGPQGSPGLLGKKGEKGNSVFILGVIKGI
QGDRGDPGPPGLPGSRGVRGPAGPVGYPGEPGLAGPPGPPGSPGLKGNPGVGVKGQMGDP
GEGGQQGSPGPTLWCATDSGLYKGEKGIKGTPGIIGPPGPPGPKGEPGIGTKGEKGIPGF
PGPRGDPGFYGSPGFPGLKGEPGVFGDPGPFGFLGPKGDPGDRGHPGPPGFVATPALPLK
GPPGDPGHPGRYGETGAVGPPGPPGPPGRPGEVCAGMMGPPGPRGFPGHPGFPGAAGIPG
RADSAPGKPGNQGPPGLPGVPGLPGPPGSDVVYCSAGPPGPQGIKGKVGPPGRRGSKGEK
GSTGLCACQPGPSGPPGPPGLPGRQGSKGDLGLPGRLGEKGYPGLPGARGSPGPPGKPGT
SGPPGSKGEKGDLVVSRVKGHKGERGPDGPPGFPGQQGQHGQDGYPGEKGDPGPLGDHED
AAPGDKGPPGPPGPPGRAGPRGPPGLGFPGPPGERGQPGAPGCPGKRGPDGWKGQKGDTI
PCNLTYPGRPGPPGFDGPPGPKGFPGRRGAPGLRCLDGEKGQRGKPGISEIPGPPGFHGD
MGDPGFGGEKGSSPVGPPGSPGSPGVNGQKGPPGDSAVGYPGPPGKRGLLGVPGSKGLRG
DPGRPGAAGPAGMPGFPGLKGPKGREGSAGFPGIPGPPGHSCERGAPGRPGPPGLPGAPG
SPGAPGWKGQQGDTGPPGPAGMKGLPGVPGRPGADGPPGPPGVPGPSGDDALPGLPGPKG
PQGLPGFLGFPGERGKPGPDGHPGRKGEHGEQGWPGSLGERGVKGDKGARGPPGHEGEMD
IISKKGETGEPGPPGDGGFPGEEGDKGHPGIQGKKGEPGSCGPPGFHRGEPGRQGQPGLP
GPPGPPGSPGLRGLIGFPGFPGDQGEPGSPGPPGLSGIDGTRGPKGYKGEPASQFGLPGP
KGERGSPGYPGHLGAPGEQGLPGVQGPGGPPGRPGPPGSSGPAGCPGNPGLPGLQGHPGE
MGDPGPRGLVGDPGAPGLPGIKGPSGSPGLNGLHGLKGQKGSKGTSGSHKTGPPGPVGMP
GPKGETGDPGSPGISPPGLFGDKGPPGPPGRPGPPGPAGAPGRVLKGDIPDPGLPGDQGP
PGPSGPRGIPGPPGPPGRVELMKGEPGDCGLPGPPGPPGPPGPPGRKGFPGCDGKDGQKG
PMGFPGLQGPPGTPGPPGEKGLPGPPGRQGPLGPPGSRGEPGPPADVDACPRIPGLPGVP
GPRGPEGTMGLPGMRGPPGPGCKGEPGLDGRRGEDGLPGSPGPPGHKGDMGEAGCPGVPG
PPGPVGDPGPEGFGPVYPSGFLLVLHSQTDGEPTCPAGMPRLWTGYSLLYLEGQERAHNQ
DLGLAGSCLPMFSTLPFAHCNIHQVCQYARRNDRSYWLASAAPLPMTPLSEEEIRPYISR
CAVCEAPAQAVAVHSQDQSVPPCPRTWRSLWIGYSFLMHTGAGDQGGGQALMSPGSCLED
FRAAPFLECQGRQGTCHFFANEYSFWLTTVRPDLQFSSAPSPDTLKESQAQRQKISRCQV
CVKHS
NT seq
5058 nt
NT seq
+upstream
nt +downstream
nt
atggcattggtaaggcgctctttcaggtggatcaagcccttggccacagattcctggttg
cttgtacttcttctcttttctgtgcaacatgcgtacgggggtgaaaagaagtttattggt
ccctgcgggggaagagattgctctctttgccagtgctttcctgaaaaggggtctcggggt
caaccaggaccaccagggccacagggtcctattggacccctggggccaccaggacccatt
ggaattccaggagagaaagggatgagaggtgacagtggccttcctggagcagcaggtgac
aagggtgataagggtccaaccggtgttcctggattctcaggtttggatgggatacctggg
cacccagggcctcctggatccagaggcaaatctggtgtagacggctacaacggctcaaga
ggtgctccaggctttccaggagaaagaggagctcctggcccacaaggctccccaggcctt
cttgggaaaaaaggagaaaaaggaaattcagtgttcattttaggtgtcattaaaggtatt
cagggtgacagaggggacccaggacctcccggcttaccaggctcaaggggagtgagagga
ccagcaggcccagtgggatatccaggagagccggggttggcaggacctccaggccctcct
gggagtccaggtttgaagggtaatcctggcgtgggagtaaaggggcaaatgggagacccg
ggtgagggtggccaacagggttctccaggacccaccctttggtgcgccactgactctggt
ctctataaaggagaaaagggtattaaaggaacgcctggaatcattggacctcccggacca
ccaggccccaagggggaacccggtattgggacaaaaggagagaaaggtattcctggattt
ccaggacctcggggggaccctggcttctatggatctccaggttttccaggattaaagggg
gaaccaggagtgtttggagatcctgggccgtttggatttcttggtccaaagggagatcct
ggagaccgcgggcacccaggaccaccagggtttgtggcaactccagctcttccactcaaa
ggccctccaggggatccagggcaccctggccgctatggagaaacgggggctgttggacca
cctggtccccctggtccccctggtagaccaggggaagtctgtgcaggcatgatgggaccc
cctgggccacgagggtttcctggtcatccaggatttccaggggcagctggtattcctggg
agagctgattctgctccagggaaaccaggcaaccagggaccacctgggttgcctggagtg
ccagggttgccgggacctccaggatcagatgttgtatattgtagtgctgggcctcctgga
ccacaaggaataaaaggcaaagtgggtcctccaggaagaagaggctcaaaaggagaaaaa
ggaagcacagggctctgtgcctgccagcctggtccctcaggcccacccggccctccagga
cttcctgggaggcaagggagtaaaggagacttgggactccctgggcgacttggagaaaaa
ggttacccaggccttcctggtgccagaggatctccagggccaccaggaaaacctggtacc
tcaggaccacctggcagcaaaggagagaaaggtgacctggttgtatcaagagtgaaaggg
cacaaaggagaaagaggtcctgatgggcccccaggatttccagggcagcagggacaacac
ggtcaagatggatatcctggagaaaaaggggacccaggaccgctgggagatcatgaagat
gcagccccaggtgataaagggcctcctggaccaccaggccccccgggcagagcaggacct
agggggcctccgggactgggatttcctggtccaccaggagagagagggcaaccaggagct
ccaggctgcccaggcaagaggggccctgatggctggaagggtcagaaaggtgatacaatt
ccttgtaacttaacctaccctgggaggccaggcccgccaggttttgatggacctccaggt
ccaaagggatttccaggtcgtcggggagctcctgggttgaggtgtctggatggggaaaag
ggtcaacgtggcaaaccaggaatctcagaaatacctggtccacctggttttcatggtgat
atgggagatccaggttttggaggtgaaaaggggtcctcccctgtcgggcccccaggctct
ccaggttcacctggagtgaatggtcagaaaggacctccaggagactctgctgttggctac
ccaggacccccaggaaagaggggtcttttaggagtaccagggtcaaaaggactcagaggt
gatcccggacgaccgggggctgcagggccagctggcatgcccggattcccgggtctcaaa
ggtcccaaagggagagagggaagtgctgggtttccagggatcccaggtccacccggccat
tcctgtgaaagaggcgctccagggagaccagggccaccagggctccctggagctccagga
agtccaggtgccccaggttggaaaggacaacaaggggacacggggcctcctggacccgct
ggaatgaagggcctccccggagtcccaggacggccaggggcagatggacccccagggccc
ccgggagtcccaggccccagtggggatgatgcgctacctggtcttccaggcccaaaggga
ccccaggggctacccggcttcctgggttttccgggagagagaggaaaacctggcccggat
ggacaccctggcagaaagggagaacacggagaacagggttggcccggctccctgggagag
cgaggagtgaaaggtgacaaaggagcaagaggacccccaggacatgaaggagaaatggat
attatttcgaaaaagggggaaaccggggaacctggacctcctggagatggtggattccca
ggagaagaaggtgataaaggccatcctgggatacaagggaagaaaggagagccaggaagc
tgtggaccacctggatttcacagaggggagcctgggaggcaagggcagccaggccttcct
ggacccccaggccctccaggctcacctgggctgagagggctcattggctttccgggattt
ccaggtgaccagggtgagccaggttctccagggccccctggactttcaggaattgatggt
acaagaggacctaaaggatacaaaggtgaacctgcaagtcagtttggcctacctggtcca
aagggtgagcgaggtagccctggatatccaggacatttgggagcacctggagagcagggc
ttgcccggtgttcaaggacctggaggaccacccggaaggccaggaccgcctggctcctct
ggaccagcggggtgtccaggtaatccagggctgcctgggctgcagggacatccaggagaa
atgggggatcctgggccaagaggcctcgtgggggatccaggggcaccaggtcttccggga
ataaaaggtccctctgggtcgcccggcctgaacggcttgcacggtttaaagggtcagaaa
ggcagcaaaggcacttcaggttcccataaaacgggcccacctggtccagtgggaatgccc
gggccaaaaggcgagacaggagaccccgggagcccaggaatttctcctccaggacttttc
ggagacaaaggtcccccaggtcccccagggagacctggaccgcctggtcctgcaggtgcc
ccaggaagagttcttaagggtgacattccggacccgggtctgcctggagatcagggacct
cctggccccagtggtccaagaggaatacccgggcctccagggccccctgggagggttgaa
cttatgaaaggtgaaccaggtgactgtggtctgccggggcctccaggtcccccaggccca
ccaggccctccaggacgcaaaggcttcccaggatgtgatggaaaagatggccagaaagga
ccaatgggattcccggggctgcaggggccacctggaactcctgggccacctggagagaag
ggtttacctggacctccaggcagacaggggcccttgggtcctccaggttccagaggtgaa
cctgggccccctgcagacgtggatgcttgcccccgaatcccggggcttcctggggtacca
ggcccaagaggaccagaaggaaccatggggctccctggaatgagaggccccccaggacca
gggtgcaaaggagagcccgggctggatggcaggagaggcgaggatggccttccagggtcc
cctgggcctccgggacacaaaggtgacatgggagaagcgggctgcccaggagtaccgggc
cctcctgggcccgtgggggatcctgggcccgaagggttcggccctgtataccccagtggc
ttcctcctggttctccacagtcaaacagatggagaacccacctgccccgcgggcatgccc
aggctctggaccgggtatagtctgttatacctggaaggacaggagagagctcacaatcaa
gaccttggtctggcgggctcctgcctccccatgttcagcacgctgcccttcgcccactgc
aacatccaccaagtgtgccagtatgcccggaggaacgacaggtcctattggctggcgagc
gccgcaccgttgcctatgacgccgctctcggaggaggagatccgcccgtacatcagccgc
tgcgccgtgtgcgaggcccccgcgcaagccgtggctgtgcacagtcaggaccagtctgtc
ccgccgtgtccgcggacctggaggagcctctggattgggtactctttcctgatgcacaca
ggcgctggggaccaaggaggcggccaggccctcatgtcacccggcagctgcctggaggat
ttcagagctgcaccgttccttgaatgccaaggacgtcagggaacttgccacttttttgca
aatgagtatagcttctggctgacaactgtgagacctgacttgcagttttcctcagcaccc
tcaccggacaccttgaaagaaagccaagcccagcgccagaaaattagcaggtgccaggtc
tgtgtgaagcatagctag
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