Phocoena sinus (vaquita): 116756420
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Entry
116756420 CDS
T07759
Symbol
RIF1
Name
(RefSeq) LOW QUALITY PROTEIN: telomere-associated protein RIF1
KO
K11138
telomere-associated protein RIF1
Organism
psiu
Phocoena sinus (vaquita)
Pathway
psiu04550
Signaling pathways regulating pluripotency of stem cells
Brite
KEGG Orthology (KO) [BR:
psiu00001
]
09140 Cellular Processes
09144 Cellular community - eukaryotes
04550 Signaling pathways regulating pluripotency of stem cells
116756420 (RIF1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
psiu03032
]
116756420 (RIF1)
DNA replication proteins [BR:
psiu03032
]
Eukaryotic type
DNA Replication Termination Factors
Other termination factors
116756420 (RIF1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rif1_N
HEAT_ULK4
Motif
Other DBs
NCBI-GeneID:
116756420
NCBI-ProteinID:
XP_032492626
Ensembl:
ENSPSNG00000022170
LinkDB
All DBs
Position
7:complement(80063613..80120791)
Genome browser
AA seq
2545 aa
AA seq
DB search
MTPARRCLLDWLEPLPPGLSYSRALWGPPPPPSWSRRERAARVSKQPEPGKSRSGCVRVL
QGSGGEDAGLSSYVGGGADMTAPGHSPFVPLLETLEDPSASLGEQTDAYLTLTSRMTGED
GKEIIIEIEKKLPQLFRVLKTHIASQNSELSSAALQALGFCLYNPKITSGLSETNIQELL
SKLNDIVKNSDKNVRTRALWVISKQTFPTEVVGKVVSSIIDSLEIVFNRGEMHSAVVDYE
ALNVIIRLIEQAPIQMGEESIRWAKLVIPLSGHSXQKVHLRGATALEMGMPLLLQKQQEI
ASITEQLMTTKLLSELQKLFMSKNETYVLKLWPLFVKLLGKTLHRSGSFINSLLQLEELG
FRSGAPMIKKIAFIAWKSLIDNFALNPEILCSAKRLKLLMQPLSSIHVRTETLALTKLEV
WWYLLMRLGPHLPANFEQVCVPLIQSTISIDSNASPQGSSSRVATSPALNPATPVHKGAS
PYGTPRMNLSSNFGGMATIPSIQVLGLEMLLHFLLGPEVLSFAKQNKLMLSLERLEHPLI
SSSSFFSKHANTFITAVRDSFVAIRKDASDAIVNAIWKELVSLVKSVIESGNKKERPGSE
VLTLLLKSLESIVKSEVFPVLKTLVLMEITIKGLPQKVLGSPAYQVANMDILNGTPALFL
IQLIFNNLLACGVEDERFFLNLETLVGCVLSGPTSPLAFSDSVLNVINQNAKQLKNKEHL
WRMWSIIVTPLTELINQTNEVNQGDALEHNFSAIYCALTLPINHIFSAQKIPAATMKTLL
KTWSELYRAFARCAALVATAEENLCCEELSSKIMSSLEDEGLSNLLFLDRITHIITVMVD
CIDFSPYNIKYQPKIKSPQRPSDWSKKKKEPLGKLASLFKLIVRVICSFHTLSLKEVHSD
TLLAIGNSITSILSNVLGHISLPSMIRKIFATLTRPLALFYENSKFDEVPKVYSCMNNKL
EKLLGEIIACLHVSYTGTYDSELLEQITPLLCIVFLHKNKQIRKQSAQFWNATFAKVTML
IYPEELKPILKQAKQKSLLLLPGLENVEIIEESGGPYSDTTENSQLNMKISGMERTSSGK
RDSFLAQTKDTKDNMKPPAKLKLESSTPKAKSEMPLEEEKSTDFVFIPPEGKETKERILT
EHQKEVLKTKRCDIPAMYNNLDVSQDTLFSQYGQEESMEIPTLTEKSKEDSKMIFKEEQK
ESDIVIPQHVMENCGMDEHLEKASLSNNECGSIEETNPEILSSNDARKKALIVSKKTPTE
CASSTENTFGVSSSSVSNATISGTPPPQPTSRRQSFITLEKFDGSENRPFSPSPLNNMSS
AVIVKNNQEGTAKTDNPPKAKKREVALSKSDSAKTVHGIKRSVRRSSKPEPIGNKKSKPL
RSDQEKSTRESVDGMVALENNPPGLLNQTECALDNQVHLSESSVEYEDTMLKPTIENTVL
LENSTVEEKTLEINLESKENTPPAIITTDQTVNEDSHVQITPNHKTLRRSLRRRSETAEP
TTDSQDKENNQKRERRKEEEKTLQRSPLHVKDDVLPKQKLISEQTVQENLIEKGNNLHEK
TFGETSANAEIDENRRKPDLETTKSEGDGAQDIADKSSEITVRGRTRYQTRRASQGLLSS
IENSESDSSEAKEEGSKKKRSGKWKNKSNDSVDIEDQEEKMVKQECIKVESQTHDYKGNS
EVDKDTKSQICEKREESNTVTLQDSTISSELLQVSGDVSNTYEGKSKTNKCAEHSFSNPS
VPESNLRTRNANKRLHKRDSLENSVGESSKTETSDISLLSEKTLQTLECQHKRSKRVRRS
KGCDCCGEKSQPQEKSFIGLKNTENYDVKVSETKKTDVQTPVTISETSKADLYSEVKLLD
EHHSVNFHLDLKEENDTINDSLIISETELKENTIKDFLPSEMVNFKEETCDRDSEVAISL
ESQEPSNKKCKTIDPCLGDFKDISLECLTLETKEEKPEAIPKKELSIIENLVNVEANAEL
NPGEVDAMELNAENDKSEASFSKQKSVKTDISEEEVTEKNSQSTDAPEELSADEAIAVEF
NSGIGHSDNTAPVKVSAQLEISEQIAVGELDRGSDESDPGSSGEMNAEMENCEETVIGEV
TTETDRVNETEDEDLTTKASKPIEAETKRLNAEIDSFVPNTLEMSSEEGKVDSNKTETNI
EPNKFEETKLGDSQMVAGNNGILPEVYHISEKVEETPQPLTAETAVSELVSEDNNTSPQK
LKDVDPLLMSANDSPSGMQTRCVWSPLASPSTSILKRGLKRPQEDESSSPVHKVRRVSFA
DPIYQAGLADDIDRRCSIVRCHSSNSSPVVKSVKTSPTAQSKHNTTSAKGFLSPGSRSAK
FKSSKKCLIAEMSKESVPCPTESVYPALVNCVAPVDIILPQITSNMWARGLGQLIRAKNI
KTIGDLSTLTASEIKTLPIRSPKVSNVKKALRVYHEQQVKSRGLEEIPVFDISEKTVNVM
ENKSISPDEERLASDLIDPVALETPLSKNLVAQISALALQLDSEDLHNYSGSQLFEMHEK
LGSMANSIIKNLQSRWRSPAHENSI
NT seq
7638 nt
NT seq
+upstream
nt +downstream
nt
atgactccggcgcgccgctgcctgttggattggctcgagcctctcccgccaggcctgtcc
tactcccgcgcgctctggggcccgcccccgccgccatcttggtctaggagggagcgggcc
gcacgcgtgagtaaacagccggagccgggaaagtcgaggtcgggctgcgtccgggtgctg
cagggcagcggcggagaggacgcaggtctatcttcgtacgtggggggaggggccgacatg
acggccccgggccacagccctttcgtgccgctgttggagactttggaagacccttccgcc
tcccttggagagcagaccgacgcttacctgactctgaccagtcgtatgactggagaagat
ggaaaagaaatcattatagaaattgagaagaaacttcctcagctattcagagttttaaag
actcacattgccagtcaaaactcagagctcagtagtgctgctctgcaggccttggggttt
tgcttatataatccgaaaattacctctggattatcagagacaaatattcaagaactgctt
tcaaaactgaatgatattgttaagaattcagataaaaatgtacgtactagggcactttgg
gtgatatccaaacagacgtttcccactgaagttgttggcaaagtagtatctagtataatt
gattcattagaaatagtctttaatagaggagagatgcattctgctgttgtggattatgaa
gcattaaatgtcatcataaggctaattgaacaagccccaattcaaatgggagaagagtca
attagatgggcaaaattggtcataccattaagtggtcattcgngccaaaaggtgcatttg
cggggagctactgctctagagatgggaatgccgttgttacttcagaaacaacaagaaatt
gcatctatcacagagcagcttatgactaccaaattactttcagaactccagaagctattt
atgagtaaaaatgagacttacgtgttaaaattatggcctttgtttgtcaaacttcttggg
aagaccttgcatcgaagtgggagtttcatcaattctctattacagctagaagaactggga
tttcgtagtggagcacccatgattaaaaaaatagcttttattgcttggaagagtttaata
gataattttgctttaaatccagaaatactatgtagtgcaaaaagactgaagttgttaatg
cagcctttgagttctatccatgtgagaacagaaactctagcgctgacaaaactagaagtc
tggtggtatttattgatgagactaggacctcatcttcctgctaattttgaacaggtctgt
gtgcctctgattcaaagcacaataagcattgattctaatgcttcacctcaaggcagttca
tctcgtgtagctacttctccagctttaaatcctgcgacccctgtacacaaaggtgcttct
ccatatggaactccccggatgaacttgagttcaaattttggtggaatggccacaatcccc
tctatacaagttttggggcttgaaatgttgcttcattttttgttgggtccagaagtcttg
agttttgctaagcaaaacaaacttatgctgagcttagagcgacttgaacatccgttaatc
agcagctcttcttttttttccaaacatgcaaatacatttatcactgctgttcgtgatagc
tttgttgcaattagaaaagatgcttctgatgcaattgtcaatgctatttggaaggagcta
gttagcttggtgaagtcagttattgaatctggtaacaaaaaagagagaccaggttctgaa
gttttgactcttctattaaaatctttggaaagcatagtgaagtcagaagtatttcctgta
ttgaaaacactggttctcatggaaattacaattaaaggacttcctcagaaagtattaggt
tctccagcatatcaggttgctaatatggatattcttaatgggactcctgctttgttctta
attcagttaattttcaataatctgttagcatgtggtgtagaagatgaaaggttttttctc
aacctggaaacacttgtaggctgtgttctttctggtccaacttcaccgctggctttcagt
gactctgtcttaaatgttattaatcaaaatgcaaagcagttgaaaaacaaggagcatctt
tggagaatgtggagtattatagtcaccccattaactgaattgataaatcagaccaatgaa
gtgaatcaaggtgatgccttagaacataattttagtgccatctattgtgcactgacttta
ccaataaaccatattttttcagcacaaaaaattccagcggccaccatgaagaccttactt
aaaacttggtcagaattatatagagcatttgctcgctgtgcagctttggtggcaactgca
gaggagaatttgtgctgtgaggaactttcttccaagataatgtccagtttggaagatgaa
ggcctttcaaatttattgttcttggataggatcactcatattattactgtaatggttgat
tgcatcgacttttcaccatataatattaagtatcagcccaaaattaaatcaccacagaga
ccttcagattggtccaaaaagaagaaggagcccttgggaaaattggcttctttatttaaa
cttattgtgagagtgatctgttctttccacactctgagcctcaaggaagtacattctgat
actctcctcgctattggcaactcaatcaccagcattctttccaatgtacttggacatatt
tctttgccttctatgatccgaaaaatatttgcaactttaacaagacctctggcattattt
tacgaaaactcaaagtttgatgaagttcctaaagtatatagttgtatgaacaacaagtta
gaaaagctactaggagaaattattgcttgtctacacgtcagctacactgggacttatgac
agtgaacttcttgaacagatcacgccattattatgcatagtatttttacacaagaataaa
cagattagaaaacaaagtgctcagttctggaatgccacatttgctaaagtgacgatgttg
atttatcctgaggagttaaaaccaatactgaaacaagccaaacaaaaatctctgcttctg
ttgcctggtttggaaaatgttgaaattattgaggaatccggtggaccatattcagataca
acagaaaattcacagttaaatatgaagataagtggcatggaaagaacctcaagtggaaaa
agagattcttttttggcacaaacaaaggatacaaaagacaatatgaaaccaccagctaaa
ttgaaactagagtcttcaactccaaaagcaaagagtgaaatgcctttggaagaagaaaag
tctactgactttgtgtttatacctccagaaggaaaagaaacaaaggaaaggatactaact
gaacaccagaaggaagtactcaaaacaaagaggtgtgatattcctgccatgtataataat
ctggatgtttcacaagatactttgttttctcagtatggtcaggaagagtctatggaaatt
cctactttaactgaaaaatccaaggaagattccaagatgatatttaaggaggaacaaaag
gagagtgacattgtcattcctcaacatgtcatggaaaactgtggtatggatgaacacctt
gaaaaggcttccctttcgaataatgagtgtggttctattgaggaaaccaatccagaaata
ctgagcagtaatgatgccagaaaaaaggctttaattgtatcaaagaagacgccaactgaa
tgtgcatctagtacagaaaatacatttggtgtcagcagtagctcggtttctaatgccact
atttctggaactcctcccccacagcctacaagtcgaaggcaatcctttattactttggag
aagtttgatggctcagaaaatagaccctttagtccatcccctttgaataatatgtcatca
gctgttatagtgaaaaataatcaggaaggcacggctaaaacagataatccaccaaaagca
aagaaaagagaagtggctctttcaaaatctgactctgcaaaaacagtgcatgggattaag
agatcagtccgaaggtcgagtaagcctgaaccaatagggaataaaaagtctaagcccttg
agatctgatcaggagaaaagtactcgggaatctgttgatggcatggtagccttagaaaat
aacccacctggtttgcttaatcaaacagaatgtgcattagataatcaggttcatctctct
gagtcttcagtggagtatgaggatacaatgcttaaaccaacaatagaaaatactgtacta
ttagaaaacagtactgtagaggagaaaaccttagaaattaatttggaatccaaagaaaac
acacccccagccataataacaacagatcaaacagtaaatgaggatagtcatgttcagata
actccaaatcataaaacccttagacgatctttaaggcgacgttcagaaacagcagagcca
accactgatagccaagataaagaaaataatcaaaaaagggaaagacgtaaggaagaagaa
aagactctgcagaggagtccattgcatgtaaaagatgatgttttacctaagcaaaaactg
atttctgaacaaactgtacaggaaaatttaattgagaaaggaaataatttacatgagaag
acttttggggaaaccagcgctaatgctgaaatcgatgaaaatagaagaaagccagatctt
gagactactaaatctgagggagatggtgcccaggacattgcagataaatcctctgagata
acagtaaggggacgaacacggtatcaaacaagaagagcatcccagggtttactttccagc
attgaaaactcagaatctgatagttctgaggcaaaagaagaaggttctaagaagaaaaga
tctggaaaatggaaaaacaaaagcaatgacagtgttgacattgaagatcaagaagagaaa
atggtaaaacaggaatgtataaaggttgaaagtcagacacatgattataaagggaattct
gaagtagacaaagatacaaaatctcagatctgtgaaaaaagagaagaaagtaatactgta
actcttcaagattctacaatatcttcagaattattacaagtttctggtgatgtatcaaat
acttatgagggaaaaagtaaaactaacaaatgtgcagaacattccttttcaaatccttct
gtaccagaatcaaatctaaggactagaaatgccaataaaagattgcataagcgagattct
ctagaaaatagtgtgggtgaatcctcaaaaacagaaacatcagacatttctttgctttct
gagaaaactcttcaaacacttgaatgccaacacaagagaagtaagagggtgaggagatct
aaaggttgtgattgctgtggagaaaaatcacaacctcaggaaaagtcattcattgggtta
aagaatacagagaattatgatgtaaaagtcagcgaaacaaaaaagacagatgtgcagaca
cctgtaactatatcagaaacttctaaagctgatctgtattcagaagtaaaacttttagat
gagcatcatagtgtgaattttcatttggatctcaaggaggagaatgatactataaatgat
tcattaattatatctgaaactgagttgaaagaaaatactattaaagactttcttccttct
gaaatggtaaattttaaagaagaaacttgtgatagggattctgaggtagcaatatctctt
gaaagccaggagccatctaataaaaaatgtaaaacgattgacccatgtttgggtgacttc
aaagatatttcactggaatgtttaactttggagaccaaagaagaaaagccagaggctatc
cccaaaaaggaattgagtattatagagaaccttgttaatgttgaagcaaatgcagaatta
aatccaggagaagtagatgctatggaattgaatgcagaaaatgataaatctgaagctagc
ttctctaaacaaaagagtgtcaaaactgatatttcagaggaagaggtaacagagaaaaac
agtcaaagtacggatgcacctgaagaactcagtgctgatgaagcaatagctgtggaattt
aattcaggtattggtcattctgataataccgcacctgtaaaagtgagtgctcagttagag
atttctgaacaaatagcagttggggaactagacagaggaagtgatgaatctgatccaggc
tcatctggagaaatgaatgctgaaatggaaaattgtgaagaaacagtgattggtgaggtg
actactgaaactgaccgtgtcaatgaaacagaggatgaggacttaactaccaaagcctct
aagcctatagaagctgaaacaaagagattgaatgcagaaatcgatagttttgttcccaac
acacttgagatgagctctgaagaaggaaaggttgactctaataaaactgaaacaaatatt
gaacctaataaatttgaggaaacaaaattaggtgacagtcagatggtagcaggaaataat
ggaattttaccggaagtttaccatatttcagagaaagtggaggagacaccacaacctctg
acagctgaaacagctgtttctgaactggtatcagaagacaataatacatctcctcaaaaa
ttaaaggatgttgatcctttactcatgtcagcaaatgacagtcctagtggcatgcagaca
cgctgtgtctggtctcctttggcttctccatccaccagcattttaaagagaggactaaaa
agaccccaagaagatgaaagctcatcacctgttcacaaggttcgccgtgtctcctttgca
gatcctatataccaggcaggattggcagatgacattgataggcgatgctctattgttagg
tgccattcttcaaatagttctcccgtagtaaaaagtgttaaaacttcacctactgcgcaa
tctaagcataatactacttcagccaaaggatttctgtccccaggatcacgtagcgctaaa
tttaagagctcaaagaagtgtttaattgcagaaatgtctaaggaatctgtgccatgccca
acagaaagtgtttaccctgctttggtgaactgtgtagcaccagttgacatcattttacct
cagattacgtccaacatgtgggcaagaggactgggacaactcattagagccaagaatata
aaaacaattggtgatttgagtactcttacagcatctgaaataaaaactcttcctatccgt
tctccaaaagtgtctaatgtaaaaaaggctctcagagtatatcatgagcagcaggtgaag
tctcgtggactagaagagattccagtttttgatatttctgaaaaaacagtaaatgtaatg
gaaaataaatctatttctcctgatgaagaaagacttgcctcagatttaattgatcctgtt
gctttagagactccgttatctaaaaaccttgtggcccagattagtgcacttgctcttcaa
ctagattcagaagatctccataattattcaggaagccagctatttgaaatgcatgagaaa
cttggtagcatggcaaactctataattaaaaatctgcagtcacgttggaggtcaccagcc
catgaaaattctatttag
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integrated database retrieval system
