Phocoena sinus (vaquita): 116756460
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Entry
116756460 CDS
T07759
Symbol
HDAC4
Name
(RefSeq) histone deacetylase 4 isoform X1
KO
K11406
histone deacetylase 4/5 [EC:
3.5.1.98
]
Organism
psiu
Phocoena sinus (vaquita)
Pathway
psiu04371
Apelin signaling pathway
psiu04613
Neutrophil extracellular trap formation
psiu05034
Alcoholism
psiu05203
Viral carcinogenesis
psiu05206
MicroRNAs in cancer
Brite
KEGG Orthology (KO) [BR:
psiu00001
]
09130 Environmental Information Processing
09132 Signal transduction
04371 Apelin signaling pathway
116756460 (HDAC4)
09150 Organismal Systems
09151 Immune system
04613 Neutrophil extracellular trap formation
116756460 (HDAC4)
09160 Human Diseases
09161 Cancer: overview
05206 MicroRNAs in cancer
116756460 (HDAC4)
05203 Viral carcinogenesis
116756460 (HDAC4)
09165 Substance dependence
05034 Alcoholism
116756460 (HDAC4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
psiu03036
]
116756460 (HDAC4)
Enzymes [BR:
psiu01000
]
3. Hydrolases
3.5 Acting on carbon-nitrogen bonds, other than peptide bonds
3.5.1 In linear amides
3.5.1.98 histone deacetylase
116756460 (HDAC4)
Chromosome and associated proteins [BR:
psiu03036
]
Eukaryotic type
Histone modification proteins
HDACs (histone deacetylases)
Class II HDACs
116756460 (HDAC4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Hist_deacetyl
HDAC4_Gln
Oxidored_nitro
Motif
Other DBs
NCBI-GeneID:
116756460
NCBI-ProteinID:
XP_032492720
Ensembl:
ENSPSNG00000001781
LinkDB
All DBs
Position
7:1684674..1970815
Genome browser
AA seq
1083 aa
AA seq
DB search
MSSQSHPDGLSGRDQPVELLNPARVNHMPGSVDVASALPLPVAPPAVPMDLRLDHQFPLP
ATEPGIREQQLQQELLALKQKQQLQRQILIAEFQRQHEQLSRQHEAQLHEHIKQQQELLA
VKHQQELLEHQRKLERHRQEQELAKQQREQKLQQLKHKEKGKESAVASTEVKMKLQEFVL
NKKKALAHRNLNHCMSSDPRYWYGKTQHSSLDQSSPPQSGASVSYSHPVLGMYDAKDDFP
LRKTASEPNLKLRSRLKQKVAERRSSPLLRRKDGPVVTALKKRPLDVTDSACSSAPGSAP
SSPNNSSGNASAENGIAPAVPSIPTETGLAHRLVTREGSVGPLPLYTSPSLPNITLGLPA
TGPSAGAASQQEAERLALPALQQRISLFPGTHLTPYLGTAPLERDSGATPSSLLQHVVLL
EQPPAQTPLVTDRYLAGLGALPLHAQPLVGAERVSPSVHKLRQHRPLGRTQSAPLPQSAQ
ALQHLVVQQQHQQFLEKHKQHLQQPQLHLGKIIPKASEPARQPESHPEETEEELREHQAL
LEEPFLDRPSGPKEAHTLAGVQVKQEPVESDEDDVTPGQRQPTEQELLFRQQALLLEQQR
VHQLRSYQASMEAAGIPVSFGGHRPLSRAQSSPASATFPMSVQEPPTKPRFTTGLVYDTL
MLKHQCTCGNTNSHPEHAGRIQSIWSRLQETGLRGRCECIRGRKATLEELQTVHSEAHAL
LYGTNPLNRQKLDSKKLLGSLTSVFVRLPCGGVGVDSDTIWNEVHSSGAARLAVGCVVEL
VFKVATGELKNGFAVVRPPGHHAEESTPMGFCYFNSVAVAAKLLQQRLSVTKTLVVDWDV
HHGNGTQQAFYSDPSVLYISLHRYDDGNFFPGSGAPDEVGTGPGVGFNVNMAFTGGLDPP
MGDAEYLAAFRTVVMPIANEFAPDVVLVSSGFDAVEGHPTPLGGYNLSAKCFGYLTKQLM
GLAGGRIVLALEGGHDLTAICDASEACVSALLGNELDPLPEKVLQQRPNANAVRSMEKVI
EIHSQYWRSLQRLASTAGYSLVEAQKCENEEAETVTAMASLSVGVKAPEKRPDEEPMEEE
PPL
NT seq
3252 nt
NT seq
+upstream
nt +downstream
nt
atgagctcccaaagccatccagatggactttctggccgagaccagccggtggagctgctc
aaccctgcccgcgtgaaccacatgccaggctcggtggatgtggcctcggcgctgcctttg
ccggtggcccccccggcggtgcccatggacctgcgcctggaccaccagtttccgctgccc
gcgacggagcccggcatccgggagcagcagctgcagcaggagctcctggccctcaagcag
aagcagcagctccagaggcagatcctcatcgctgagttccagaggcagcacgagcagctg
tcccggcagcacgaagcccagctccatgagcacatcaaacaacagcaggagctgctggcc
gtgaagcaccagcaggagctgctggagcatcagcggaagctggagagacaccgccaagag
caggagctggcgaagcagcagcgggagcagaagctgcagcagctcaagcacaaggagaaa
ggcaaagagagtgctgtggccagcacagaagtgaagatgaagctacaggagtttgtcctc
aataaaaagaaggcgctggcccaccggaacctgaaccactgcatgtccagtgaccctcgc
tactggtatgggaagacgcagcacagctccctggaccagagctccccgccccagagcggg
gcatcggtctcctacagccacccggtcctgggcatgtacgacgccaaagatgactttcct
ctcagaaagacagcatctgaacccaatctgaaattacgctccaggctaaagcagaaagtg
gctgaaagacggagcagccccctgttacgcaggaaagatgggccagtggtcacggctctg
aaaaagcgtcctttggatgtcacagactcggcctgcagcagcgccccgggctccgcaccc
agctcacccaacaacagctctgggaatgccagcgcggagaatgggatcgcgcctgctgtc
cccagcatcccgaccgagacgggcctggcacacagactcgtgacgcgagaaggctcggtg
ggcccgctgcccctgtacacgtcaccgtccctgcccaacatcacgctgggacttcccgcc
accggcccctccgcgggggcggccagccagcaggaggccgagagactggccctcccggcc
ctccagcaacgcatctccctcttccccggcacccacctcaccccctacctgggcaccgca
cccctggagcgcgactcgggggcgactcccagctcccttctgcagcacgtggtcctcctg
gagcagccgcccgcgcagacgcccctcgtcacagaccgctatcttgcaggcctgggagca
ctgcccctgcacgcgcagcccctggtgggggcggagcgcgtgtccccgtcggtgcacaag
ctgcggcagcaccgcccgctgggccgcacgcagtcggcgccgctgccccagagcgcgcag
gcgctgcagcacctggtggtccagcagcagcatcagcagttcctggagaagcacaagcag
cacctgcagcagccgcagctgcacctcggcaagatcatccccaaagcgagcgagccggcc
cggcagcccgagagccaccctgaggagactgaggaggagctgcgcgagcaccaggccctc
ctggaggagccgttcctggaccggccctcagggccgaaggaggcgcacacgctggccggg
gtgcaggtgaagcaggagcccgtagagagcgatgaggacgacgtgacaccgggccagcgg
cagcctaccgagcaggagctgctgttcagacagcaagccctcctcctggagcagcaacgg
gtccaccagctgaggagctaccaggcgtcaatggaggcagccggcatccccgtgtccttc
ggcggccaccggcctctgtcccgagcgcagtcctcccccgcgtccgccaccttccccatg
tctgtgcaggagcccccgaccaagccgcggttcaccacaggcctcgtgtacgacacgctg
atgctgaagcaccagtgcacctgtgggaacaccaacagccacccagagcacgccgggcgc
atccagagcatctggtcccggctgcaggagaccggccttcgaggcagatgtgagtgcatc
cgcggacgcaaggccaccctggaggagctgcagacggtgcactcggaggcgcacgccctg
ctctacggcacgaaccccctcaacaggcagaaactggacagtaagaaactcctaggctcg
ctaacatcggtgtttgtcaggctgccctgcggtggtgtcggggtagacagtgacaccata
tggaacgaggtccactcgtcaggggcagcccgcctggccgtgggctgcgtggtggagctg
gtcttcaaggtggccacaggggaactgaagaatggctttgccgtggtccgccccccagga
caccatgcggaggagagcacgcccatggggttctgctacttcaattccgtggctgtcgca
gccaagcttctccagcagaggttgagtgtgaccaagaccctcgtggtggactgggacgtg
caccatgggaacgggacccagcaggccttctacagtgaccccagcgtgctgtacatctcg
ctgcaccgctacgacgatgggaacttcttcccaggcagcggggcacctgacgaggtgggc
acggggcccggcgtgggcttcaacgtcaacatggctttcaccggcggccttgaccccccc
atgggagacgcagagtacttggcggccttcagaactgtggtcatgccaatcgccaacgag
tttgccccagacgtggtgctggtgtcatcgggcttcgacgccgtggagggccaccccacg
cccctcggaggctacaacctctccgccaaatgtttcgggtacctgacgaagcagctgatg
ggcttggctggcggccggatcgttctggcgctggaggggggccacgacctcacagccatt
tgcgacgcctcggaagcctgcgtctctgctttgctgggaaacgagcttgatcctctccca
gaaaaggttttacagcagagacccaatgcgaacgctgtccggtcgatggagaaggtcatt
gaaatccacagccagtactggcgctccctgcagaggctcgcctccaccgccggctactct
ctggttgaggcccagaagtgcgagaacgaagaggctgagactgttactgccatggcctca
ctgtctgtgggcgtgaaggcccccgagaagaggccggacgaggagcccatggaagaggag
ccccccctgtag
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