Phocoena sinus (vaquita): 116756548
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Entry
116756548 CDS
T07759
Name
(RefSeq) sodium channel protein type 1 subunit alpha isoform X1
KO
K04833
voltage-gated sodium channel type I alpha
Organism
psiu
Phocoena sinus (vaquita)
Pathway
psiu04728
Dopaminergic synapse
Brite
KEGG Orthology (KO) [BR:
psiu00001
]
09150 Organismal Systems
09156 Nervous system
04728 Dopaminergic synapse
116756548
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
psiu04040
]
116756548
Ion channels [BR:
psiu04040
]
Voltage-gated cation channels
Sodium channel, voltage-gated (Nav)
116756548
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ion_trans
Na_trans_cytopl
Na_trans_assoc
IQ_SCN5A_C
PKD_channel
GPHH
ATP-synt_B
IQ
FUT8_N_cat
FraC
PFF1_TM
Motif
Other DBs
NCBI-GeneID:
116756548
NCBI-ProteinID:
XP_032492982
Ensembl:
ENSPSNG00000000842
LinkDB
All DBs
Position
7:66828713..66992876
Genome browser
AA seq
2008 aa
AA seq
DB search
MEQTVLVPPGPDSFSFFTRESLAAIERRIAEEKAKNPKPDKKDDDERGPKPNSDLEAGKN
LPFIYGDIPPGMVSEPLEDLDPYYINKKTFIVLNKGKAIFRFSATSALYILTPFNPLRKI
AIKILVHSLFSMLIMCTILTNCVFMTMSNPPDWTKNVEYTFTGIYTFESLIKIIARGFCL
EDFTFLRDPWNWLDFTVITFAYVTEFVDLGNVSALRTFRVLRALKTISVIPGLKTIVGAL
IQSVKKLSDVMILTVFCLSVFALIGLQLFMGNLRNKCVQWPPTNASLEEHSVEKNITVNY
NGTLVNETLIEFDWKSYVQDSRYHYFLEGFSDALLCGNSSDAGQCPEGYMCVKAGRNPNY
GYTSFDTFSWAFLSLFRLMTQDFWENLYQLTLRAAGKTYMIFFVLVIFLGSFYLINLILA
VVAMAYEEQNQATLEEAEQKEAEFQQMLEQLKKQQEAAQQAAAVTASVHSREPSAAGGLS
DSSSEASKLSSKSAKERRNRRKKRKQKEQSGGEEKDDDEFHKSESEDSIRRKGFRFSIEG
NRLTYEKRYSSPHQSLLSIRGSLFSPRRNSRTSLFSFRGRAKDVGSENDFADDEHSTFED
NESRRDSLFVPQRHGERRNSNLSQTSRSSRMLAVFPANGKMHSTVDCNGVVSLVGGPSVP
TSPVGQLLPEVIIDKPATDDNGTTTETEMRKRRSSSFHVSMDFLEDPSQRQRAMSIASIL
TNTVEELEESRQKCPPCWYKFSNMFLIWDCSPHWLKVKHIVNLVVMDPFVDLAITICIVL
NTLFMAMEHYPMTDHFNNVLTVGNLVFTGIFTAEMFLKIIAMDPYYYFQEGWNIFDGFIV
TLSLVELGLANVEGLSVLRSFRLLRVFKLAKSWPTLNMLIKIIGNSVGALGNLTLVLAII
VFIFAVVGMQLFGKSYKDCVCKINSECKLPRWHMNDFFHSFLIVFRVLCGEWIETMWDCM
EVAGQAMCLTVFMMVMVIGNLVVLNLFLALLLSSFSADNLAATDDDNEMNNLQIAVDRMH
KGIAYVKRKIYEFIQQSFIRKQKILDEIKPLDDLNNKKDSCMSNHTTEIGKDLDYLKDVN
GTTSGIGTGSSVEKYIIDESDYMSFINNPSLTVTVPIAVGESDFENLNTEDFSSESDLEE
SKEKLNESSSSSEGSTVDIGAPAEEQPVVEPEETLEPEACFTEGCVQRFKCCQISVEEGR
GKQWWNLRRTCFRIVEHNWFETFIVFMILLSSGALAFEDIYIDQRKTIKTMLEYADKVFT
YIFILEMLLKWVAYGYQTYFTNAWCWLDFLIVDVSLVSLTANALGYSELGAIKSLRTLRA
LRPLRALSRFEGMRVVVNALLGAIPSIMNVLLVCLIFWLIFSIMGVNLFAGKFYHCVNTT
TGDMFDISEVNNHSDCLILIERNETARWKNVKVNFDNVGFGYLSLLQVATFKGWMDIMYA
AVDSRNVELQPKYEESLYMYLYFVIFIIFGSFFTLNLFIGVIIDNFNQQKKKFGGQDIFM
TEEQKKYYNAMKKLGSKKPQKPIPRPGNKFQGMVFDFVTRQVFDISIMILICLNMVTMMV
ETDDQSEYVTSILSRINLVFIVLFTGECVLKLISLRHYYFTIGWNIFDFVVVILSIVGMF
LAELIEKYFVSPTLFRVIRLARIGRILRLIKGAKGIRTLLFALMMSLPALFNIGLLLFLV
MFIYAIFGMSNFAYVKREVGIDDMFNFETFGNSMICLFQITTSAGWDGLLAPILNSKPPD
CDPNKVNPGSSVKGDCGNPSVGIFFFVSYIIISFLVVVNMYIAVILENFSVATEESAEPL
SEDDFEMFYEVWEKFDPNATQFMEFEKLSQFAAALEPPLNLPQPNKVQLIAMDLPMVSGD
RIHCLDILFAFTKRVLGESGEMDALRIQMEERFMASNPSKVSYQPITTTLRRKQEEVSAV
IIQRAYRRHLLKRTVKQASFTYNKNKIKDGANLIKEDMVIDRINENSITEKTDLTMSTAA
CPPSYDRVTKPIVEKHEQEGKDEKAKGK
NT seq
6027 nt
NT seq
+upstream
nt +downstream
nt
atggagcaaacagtgcttgtaccaccaggacctgacagcttcagcttcttcaccagagaa
tctcttgcagctattgaaagacgcattgcagaagaaaaggctaagaatcccaaaccagac
aagaaagatgatgacgaacgtggcccaaagccaaatagtgacttggaagctggaaagaac
cttccttttatttatggagacatccctccagggatggtgtcagagccgctggaggacctg
gacccgtactatatcaataaaaaaacttttatagtattgaataaagggaaggccatcttc
cggttcagtgccacttctgccctgtacattttaactcccttcaatcctcttaggaaaata
gctattaagattttggtacattcattattcagcatgctaattatgtgcactattttgacg
aactgtgtgtttatgacaatgagtaaccctcccgactggacaaagaatgtagagtacact
ttcacagggatatatacttttgaatcacttataaaaattattgcaaggggcttctgttta
gaagattttaccttccttcgggacccatggaactggctcgacttcactgtcattacattt
gcatatgtgacagagtttgtggacctgggcaatgtctccgcattgagaacattcagagtt
ctccgagcactgaaaacaatttcagtcattccaggcctgaagaccatcgtaggggccctg
atccagtctgtgaagaagctctcagatgtcatgatcctgactgtgttctgtctgagcgtg
tttgcactgattgggctgcagctctttatgggcaacctgcggaataaatgtgtacaatgg
cctcccaccaatgcttccctggaggaacatagtgtagagaagaatataactgtgaattac
aatggcacacttgtaaacgaaactctcattgagtttgactggaaatcatatgttcaagat
tcaagatatcattattttctggagggtttttcagatgcactactgtgtggaaatagctca
gatgctggccaatgtccagaaggatacatgtgtgtgaaagctggtagaaatcccaattat
ggctacacaagcttcgataccttcagttgggcttttttgtccctgtttcgactgatgact
caggacttctgggaaaacctttaccaactgacattacgtgctgctggaaaaacatacatg
atattttttgtgctggtcattttcttgggctcattctatctaataaatttgatcctggct
gtggtagccatggcctatgaggagcagaatcaggccaccttagaagaggcagaacagaaa
gaggctgaatttcagcagatgcttgaacagcttaaaaagcaacaggaagcagctcagcag
gcagcggctgtaactgcctcagtgcattccagagaacctagtgcagcaggcgggctctca
gacagctcatctgaagcctccaagttgagttccaagagtgcaaaggaaagaagaaatcgg
agaaagaaaagaaaacagaaagagcagtctggtggagaagagaaagatgacgatgaattc
cataaatctgaatctgaagacagcatcaggaggaaagggtttcgcttctccatagaaggg
aatcggttgacatatgaaaagaggtactcctccccacaccagtctttgttgagcatccgt
ggctccttattttctccaaggcgaaatagcagaacaagccttttcagcttcagagggcga
gcaaaggatgtgggatcagagaatgactttgctgatgatgaacacagcaccttcgaggat
aatgaaagccgcagagactccttatttgtgccccaacgacatggagagcgacgcaacagt
aacctgagtcagaccagtaggtcgtcccggatgctggccgtgtttccagccaatgggaag
atgcacagcactgtggattgcaatggtgtggtttccttggttggtggaccttcagttcct
acatcgcctgttggacagcttctaccagaggtgataatagataagccagctactgatgac
aatggaacaaccactgaaactgaaatgagaaagagaaggtcaagttcttttcatgtttca
atggactttctagaagatccttctcaaaggcaaagagcaatgagcatagccagcatttta
acaaatacagtagaagaacttgaagaatccaggcagaaatgcccaccctgttggtataaa
ttttccaacatgttcttaatctgggactgctcgccacattggttaaaagtgaaacatatt
gtcaacctggttgtgatggacccatttgttgacctggccatcaccatctgtattgtctta
aatactctgttcatggccatggaacactatcccatgacggaccatttcaataatgtgctt
acagtaggaaacttggttttcactgggatctttacagcagaaatgtttctgaaaattatt
gccatggatccttactattatttccaagaaggctggaatatctttgatggttttattgta
acgcttagcctggtagaacttggcctggccaacgtggaaggattatcagttctccgttca
ttccgattgctccgagttttcaagttggcaaaatcttggccaacattaaatatgctaata
aagatcatcggcaattcagtgggggctctgggaaatctaaccttggtgttggccatcatc
gtcttcatttttgctgtggtcggcatgcaactctttggtaaaagctacaaagattgtgtc
tgtaagatcaacagtgagtgtaagctcccacgttggcacatgaatgacttcttccactcc
ttcctgattgtgttccgagtgctgtgtggagagtggatagagaccatgtgggactgcatg
gaggtcgccggtcaagccatgtgccttactgtcttcatgatggtcatggtcattggaaac
ctggtggtcctgaacctctttttggccttgctcctgagctcatttagtgcagacaacctt
gcagccactgatgatgataatgaaatgaacaatctccaaattgctgtggataggatgcac
aagggaatagcttatgtgaagagaaaaatatatgaatttattcaacagtccttcattaga
aaacaaaagattttagatgaaattaaaccacttgatgatctaaacaacaagaaagacagt
tgtatgtccaatcatacaacagaaattgggaaagatcttgactatcttaaagatgtaaat
ggaaccacaagtggaataggaactggcagcagtgttgaaaaatacattatcgatgaaagt
gattacatgtcgttcataaacaatcccagtcttactgtgactgtaccgattgctgtagga
gagtctgactttgaaaatttaaacacagaggactttagtagtgaatcagatctggaagaa
agcaaagagaaacttaatgaaagcagtagctcatccgaaggcagcactgtagacattgga
gcacctgccgaggaacagcctgtagtggaacctgaggaaacccttgaacctgaagcctgt
ttcactgaaggctgtgtacaaagattcaaatgttgtcaaattagtgtggaggaagggaga
ggaaaacaatggtggaacctgagaagaacgtgtttccgaatagttgaacataactggttt
gagaccttcattgttttcatgattctccttagtagtggtgctctggcatttgaggatata
tatattgatcagcgaaagacgatcaagacaatgttggaatatgctgataaggttttcact
tacattttcattctggaaatgcttctaaaatgggtggcatatggctatcagacatatttc
accaatgcctggtgttggctagacttcttaattgttgatgtttcattggtcagtttaaca
gcaaatgccttgggttactcagaacttggcgccatcaaatctctcaggacactaagagct
ctgagacctctaagagccttatcacgttttgaagggatgagggtggttgtgaatgccctt
ttaggagcaattccatccatcatgaatgtgcttctggtttgtcttatattctggctaatt
ttcagcatcatgggcgtaaatttgtttgctggcaaattctaccactgtgttaacaccaca
actggtgacatgtttgacatcagcgaagtgaataatcattctgattgcctaatactaata
gaaagaaatgagactgcccgatggaaaaatgtgaaagtaaactttgataatgtaggattt
gggtatctctctttgcttcaagttgccacatttaagggatggatggatataatgtacgca
gcagttgattccagaaatgtggaactccagcctaagtatgaggaaagtctatacatgtat
ctttactttgttattttcatcatctttgggtccttcttcaccttgaacctgtttattggt
gtcatcatagataatttcaaccagcaaaagaagaagtttggaggtcaagacatctttatg
acagaagaacagaagaaatactataatgcaatgaaaaagttaggatcaaaaaagcctcaa
aagcctatacctcgaccagggaacaaatttcaaggaatggtctttgacttcgtaaccaga
caagtttttgacataagcatcatgattctcatctgtctcaacatggtcacaatgatggtg
gaaactgacgatcagagtgaatatgtgactagcattttgtcacgtatcaacctggtgttc
attgtgctgttcactggagaatgtgtgctgaagctcatctccctccgccattattatttt
accataggctggaatatttttgattttgtggttgtcattctctccattgtaggtatgttt
ctggctgagctgatagagaaatattttgtgtcacctaccctgttccgagtgatccgtctt
gccaggattggccgaatcctgcgtctgatcaaaggggccaaggggatccgcacgctgctc
tttgctttgatgatgtcccttcctgcgttgtttaacatcggcctcctgctcttcctggtc
atgttcatctacgccatctttgggatgtccaacttcgcctatgttaagagggaggttgga
attgatgacatgttcaacttcgagacctttggcaacagcatgatctgcctgttccagatt
accacctctgctggctgggatggattgctagcacctattctcaacagtaaaccacccgat
tgtgaccctaataaagttaaccctggcagctcagttaagggagattgtgggaacccatct
gtggggatcttcttttttgtcagttacatcatcatatcatttctggtcgtggtgaacatg
tacatcgctgtcatcctggagaacttcagtgttgctactgaagaaagtgcagagcccctg
agcgaggatgactttgagatgttctacgaggtttgggagaagtttgatcccaatgccacc
cagttcatggaatttgaaaaactctctcagtttgcagctgctcttgaacctccactcaat
ttgccacaaccgaacaaagtccagctcattgccatggatctgcccatggtcagtggggac
cggatccactgtcttgacatcttatttgcttttacaaagcgggttctgggggagagtgga
gagatggatgctctccgaatacagatggaagagcgattcatggcttccaacccatcaaag
gtctcctatcagccaataactacaactttaagacgaaaacaagaggaggtgtctgctgtt
attattcagcgtgcatacaggcgccaccttttaaagcgaactgtaaagcaagcttcattt
acatataacaaaaataaaatcaaagatggggctaatcttataaaagaagacatggtaatt
gacagaataaatgaaaactcaattacagaaaagactgatctgaccatgtccacagcagct
tgtccaccctcctacgatcgggtaacaaagccaatcgtggaaaaacacgagcaagaaggc
aaagatgagaaagccaaagggaaataa
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