Phocoena sinus (vaquita): 116756837
Help
Entry
116756837 CDS
T07759
Symbol
TRIP12
Name
(RefSeq) E3 ubiquitin-protein ligase TRIP12 isoform X1
KO
K10590
E3 ubiquitin-protein ligase TRIP12 [EC:
2.3.2.26
]
Organism
psiu
Phocoena sinus (vaquita)
Pathway
psiu04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
psiu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
116756837 (TRIP12)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
psiu04121
]
116756837 (TRIP12)
Enzymes [BR:
psiu01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.26 HECT-type E3 ubiquitin transferase
116756837 (TRIP12)
Ubiquitin system [BR:
psiu04121
]
Ubiquitin ligases (E3)
HECT type E3
116756837 (TRIP12)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HECT
WWE
UNC45-central
HEAT_2
Maestro_HEAT
Motif
Other DBs
NCBI-GeneID:
116756837
NCBI-ProteinID:
XP_032493715
Ensembl:
ENSPSNG00000008985
LinkDB
All DBs
Position
7:9354240..9506232
Genome browser
AA seq
2071 aa
AA seq
DB search
MSNRPNNNPGGSLRRSQRNTAGAQPQDDSIGGRSHLGQAKHKGYSPPESRKSNSKAPKVQ
SNTTSELSRGHLSKRSCSSSSAVIVPQPEDPDRANTSERQKTGQVPKKDSSRGVKRSASP
DYNRTSSPNSAKKPRALQHTESPSETSKPHSKSKKRHIDQEQQLKSAQSPSTSKAHTRKS
GATASSRSQKRKRTESSCIKSGSVSEATGAEERSAKPTKLASKSAASAKAGCSTITDSSS
AASTSSSSSAVASASSTVPPGARVKQGKDQNKARRSRSASSPSPRRSSREKEQSKTGGSS
KFDWAARFSPKVSLPKTKLSLPGSSKSETSKPGPSGLQAKLASLRKSTKKRSESPPAELP
SLRRSTRQKTTGSCASASRRGSGLGKRGAAEARRQEKMADPEGNQETVNSSAARTDETPQ
GAAASSSVAGAVGMTTSGESESDDSEMGRLQALLEARGLPPHLFGPLGPRMSQLFHRTIG
SGASSKAQQLLQGLQASDESQQLQAVIEMCQLLVMGNEETLGGFPVKSVVPALITLLQME
HNFDIMNHACRALTYMMEALPRSSAVVVDAIPVFLEKLQVIQCIDVAEQALTALEMLSRR
HSKAILQAGGLADCLLYLEFFSINAQRNALAIAANCCQSITPDEFHFVADSLPLLTQRLT
HQDKKSVESTCLCFARLVDNFQHEENLLQQVASKDLLTNVQQLLVVTPPILSSGMFIMVV
RMFSLMCSNCPTLAVQLMKQSFTDIAETLHFLLCGASNGSCLEQIDLVPRSPQELYELTS
LICELMPCLPKEGIFAVDTMLKKGNAQNTDGAIWQWRDDRGLWHPYNRIDSRIIEVAAHQ
VGEDEISLSTLGRVYTIDFNSMQQINEDTGTARAIQRKPNPLANTNSSGYSELKKDDARA
QLMKEDPELAKSFIKTLFGVLYEVYSSSAGPAVRHKCLRAILRIIYFADAELLKDVLKNH
AVSSHIASMLSSQDLKIVVGALQMAEILMQKLPDIFSVYFRREGVMHQVKHLAESESLLT
SPPKACTNGSGSLGSTTSVSSGTATAATNASADLGSPSLQHSRDDSLDLSPQGRLSDVLK
RKRLPKRGSRRPKYSPPRDDDKVDNQAKSPTTTQSPKSSFLASLNPKTWGRLSAQSHSNN
IEPARAAGVSGLARAASKDTISNNREKIKGWIKEQAHKFVERYFSSENMDGSNPALNVLQ
RLCAATEQLNLQVDGGAECLVEIRSIVSESDVSSFEIQHSGFVKQLLLYLTSKSEKDAVS
REIRLKRFLHVFFSSPLPGEEPTGRVEPVGNAPLLALVHKMNNCLSQMEQFPVKVHDFPS
GNGTGGSFSLNRGSQALKFFNTHQLKCQLQRHPDCANVKQWKGGPVKIDPLALVQAIERY
LVVRGYGRVREDDEDSDDDGSDEEIDESLAAQFLNSGNVRHRLQFYIGEHLLPYNMTVYQ
AVRQFSIQAEDERESTDDESNPLGRAGIWTKTHTIWYKPVRDDEESNKDCVGGKRGRAQT
APTKTSPRNAKKHDELWNDGVCPSVSNPLEVYLIPTPPENITFEDPSLDVILLLRVLHAI
SRYWYYLYDNAVCKEIIPTSEFINSKLTAKANRQLQDPLVIMTGNIPTWLTELGKTCPFF
FPFDTRQMLFYVTAFDRDRAMQRLLDTNPEINQSDSQDSRVAPRLDRKKRTVNREELLKQ
AESVMQDLGSSRAMLEIQYENEVGTGLGPTLEFYALVSQELQRADLGLWRGEEVTLSNPK
GSQEGTKYIQNLQGLFALPFGRTAKPAHIAKVKMKFRFLGKLMAKAIMDFRLVDLPLGLP
FYKWMLRQETSLTSHDLFDIDPVVARSVYHLEDIVRQKKRLEQDKSQTKESLQYALETLT
MNGCSVEDLGLDFTLPGFPNIELKKGGKDIPVTIHNLEEYLRLVIFWALNEGVSRQFDSF
RDGFESVFPLSHLQYFYPEELDQLLCGSKADTWDAKTLMECCRPDHGYTHDSRAVKFLFE
ILSSFDNEQQRLFLQFVTGSPRLPVGGFRSLNPPLTIVRKTFESTENPDDFLPSVMTCVN
YLKLPDYSSIEIMREKLLMAAREGQQSFHLS
NT seq
6216 nt
NT seq
+upstream
nt +downstream
nt
atgtccaaccggcctaataacaatccaggggggtcactgcgacgttcacagaggaacact
gccggggcccaaccacaagacgactcgataggaggaaggtcacatttagggcaggcaaaa
cataagggatatagccctcctgagagtagaaaatctaattctaaggcacccaaagtgcag
tctaatactacttctgaactgtcaaggggacacctttctaaaagaagctgcagttcatca
tctgctgtcatagtcccacaaccagaggatccagacagagccaatacttcagaaaggcag
aaaacggggcaggtgcctaagaaagacagttctcgaggagtgaaacgcagtgctagtcca
gactacaacaggaccagttctcctaactctgcaaagaaacccagagcacttcagcatact
gaatctccctcagaaacaagtaagccacacagtaagtcaaagaagagacatatagaccag
gagcaacaactgaaatctgcacagtctccatcaacaagcaaggctcataccaggaagagt
ggggccactgctagttcacggagtcagaaaagaaagaggacagagagttcttgtataaag
agtggttctgtgtcggaagcaactggtgccgaagagagatctgcaaaacctaccaagctg
gcttcaaaatcggccgcctcagccaaagctgggtgtagcaccatcaccgattcttcttct
gctgcctctacttcctcctcatcttctgctgtagcctcggcctcctctactgttccacca
ggtgccagggtgaaacaaggaaaagaccagaacaaggccagacgttcccgttcagcatcc
agtcccagtccaagaagaagtagcagggaaaaggaacagagtaaaactggtggctcttca
aaatttgattgggctgctcgtttcagccctaaagttagccttcctaaaacaaaactgtct
cttccagggtcttctaagtcagagacatcaaaacctggaccttctggattacaggccaaa
ttagcaagtttaagaaaatctaccaagaagcgcagcgaatccccacctgctgagctcccc
agtttgaggcggagcacacgccaaaagaccacgggctcctgtgctagtgccagtcggcga
ggctctggcctgggcaaaagaggagcagctgaagctcgtcgacaggagaagatggcagac
cctgaaggcaaccaggagacagtgaattcttcagctgcacggacggacgaaactccccaa
ggagcggcagcctctagttctgttgcaggggctgtgggcatgaccacttctggggagagt
gaatcggatgattccgagatgggacgattgcaagctctcttagaggccaggggtcttcct
cctcacctgtttggtcctcttggtcctcggatgtcacaacttttccatagaacaattgga
agcggagctagttctaaggcccagcagcttctgcaaggactgcaagcaagcgatgaaagc
cagcaactccaggcagttattgagatgtgtcagttattggtcatgggaaatgaggagaca
ctgggagggtttcctgtcaagagtgtagttccagctttgataacattactgcagatggag
cataattttgatattatgaaccatgcttgtcgagccttaacatacatgatggaagcactt
cctcgatcatctgctgttgtagtagatgcaattcctgtctttttagaaaagctgcaggtt
attcagtgtattgacgtggcagagcaggccttgacggccttggagatgttatcacggaga
cacagtaaagccattctacaggcgggtggcttggcagactgcttgctgtatctagagttc
ttcagcataaacgcccaacggaatgcactagcaattgcggccaattgctgccagagtatc
acaccagatgaatttcattttgtggcagattccctcccattgctaacccaaaggctaacc
caccaggacaaaaagtcagtagaaagcacttgcctttgttttgcacgtctagtggacaac
tttcaacatgaggagaatttactccagcaggttgcctccaaagatctgctaacaaatgtt
caacaactattggtagtaactccaccaattctaagttctgggatgtttataatggtggtt
cgcatgttttctttgatgtgttccaactgtcccactttagctgttcaacttatgaagcaa
agttttacagacattgcagaaactcttcactttctcctgtgtggtgcctccaatggaagt
tgtctggaacagattgatcttgttccacgaagtcctcaagaactgtatgaactgacatct
ctgatctgtgaacttatgccatgtttaccaaaagaaggcatttttgcagttgataccatg
cttaagaagggaaatgcacagaacacagatggtgcgatatggcagtggcgtgatgaccgg
ggcctttggcatccctataacaggattgacagccggatcattgaggtagcagcccatcag
gtcggtgaggatgagataagcttgtccactctgggacgagtttatactattgattttaat
tctatgcagcaaatcaatgaggacacgggaacagcacgtgccattcagagaaaacctaac
cccttagccaatactaacagtagtggatattcagagttaaagaaggatgatgctcgagca
cagcttatgaaagaggatccggaactggctaagtcttttattaagacattatttggtgtt
ctttatgaagtgtatagttcctcagcaggacctgcggtcagacataagtgccttagagca
attcttaggataatttatttcgcggatgccgaacttctaaaggatgtcctgaaaaatcat
gctgtttcaagtcatattgcttccatgctatcaagccaagacctgaagatagtagttgga
gcacttcagatggcagagatcttaatgcagaagttacctgatatttttagtgtttatttc
agaagagaaggtgtaatgcatcaagtaaaacacttagcagaatcggaatcattgttgaca
agtccaccaaaggcatgtacgaatgggtcaggatccttggggtccacgacgtctgtcagc
agtggaacagccacggctgccactaacgcctcagctgacttgggatcccccagcttgcag
cacagcagagatgattctttagatctgagccctcaaggtcgattaagtgatgttctaaag
agaaaacgactgccaaaacgaggatcaagaaggccaaagtattcacctccaagagatgat
gacaaagtagacaatcaagctaaaagccccaccactactcagtcacctaaatcttctttc
ctggcaagcttgaatccaaaaacgtggggaaggttaagcgcacagtctcacagcaacaac
attgaaccggcccgagctgcgggagttagtggtcttgccagggccgcctcaaaggacacc
atatccaataacagagaaaaaatcaaaggttggattaaagagcaggcgcataaatttgta
gagcgttatttcagttctgagaacatggatggaagcaaccctgcattgaatgtccttcag
agactttgtgctgcaaccgaacaactcaacctccaggtggatggtggagctgagtgcctt
gtagaaatccgtagcatagtctcagagtcagatgtttcatcatttgaaatccaacatagt
ggatttgtgaagcagctattgctttatttgacatctaaaagcgaaaaggatgctgtgagc
agagagatcagattaaagagattccttcatgtatttttttcttctccacttcctggagag
gagcccactggaagagtagaaccagtgggtaatgcacctttgttggcattagttcacaag
atgaacaactgcctcagccagatggaacagtttccagtcaaagtgcatgactttccgagt
ggaaatggcacaggaggcagcttttctctcaacagaggatcacaggctttaaaatttttc
aacacacatcagttaaaatgccagttacaaagacatccagactgtgcaaatgtgaagcag
tggaagggtggacctgtcaagattgaccctctggctttggtgcaagcaatcgagagatac
cttgtagttagagggtatggaagagtaagagaagatgatgaagacagtgacgatgatggc
tctgatgaggaaatagacgagtctctggctgctcaattcttaaattcaggaaatgtacga
cacaggctacagttttacatcggagaacatttgctaccgtataacatgactgtgtatcag
gcagtacggcagttcagtatacaggccgaagatgaacgggaatccacggatgatgagagc
aatcctctaggaagagctggtatttggacgaaaactcatacaatatggtacaaacccgtg
agagacgatgaagaaagcaataaagattgtgttggtggcaaaagaggaagagcccaaaca
gctccaacaaaaacttcccctagaaatgcaaaaaagcacgatgagttgtggaacgatgga
gtgtgcccgtcagtatcaaatcctttagaagtttacctcatacccacaccacctgaaaat
ataacttttgaagacccttcattagatgtgattcttcttttaagagttttacatgccatc
agtcgatactggtattacttgtatgataatgcagtgtgcaaggaaattattccaactagt
gaatttattaacagtaagttgacagcaaaagcaaataggcagcttcaggatcctttagta
atcatgacgggaaacatcccaacatggcttactgaactaggaaaaacctgcccgtttttc
ttcccttttgatacccggcaaatgcttttttatgtaactgcatttgatcgggaccgagca
atgcaaagattacttgataccaacccagaaatcaaccagtctgattctcaagatagcaga
gttgcacctagattggatagaaaaaaacgtactgtgaacagagaggagctgctgaaacaa
gcagagtctgtgatgcaggatctcggcagctcacgggccatgttagaaattcagtatgaa
aatgaggttggcacaggtctggggcctacactggagttttatgcacttgtatctcaggaa
ctacagagagctgacttgggtctctggagaggggaagaagtaactcttagcaatccaaaa
ggaagccaagaagggaccaagtatattcaaaacctccaaggcctgtttgcgcttcccttt
ggtaggacagctaagccagctcatatcgcaaaagttaagatgaagtttcgcttcttagga
aaattaatggccaaggctatcatggatttcagattggtggaccttcccctgggcttacct
ttttataaatggatgctacggcaagaaacttcgctgacgtcacacgatttgtttgacatt
gacccagttgtagccagatcagtgtatcacctagaagacattgtcagacagaagaaaaga
cttgaacaagataaatcccagaccaaagagagtctacagtatgcattagaaaccctgact
atgaatggctgctcagttgaagatctaggattggatttcactctgccagggtttcccaac
atcgaactgaagaaaggaggaaaggatataccggtcaccatccacaatttggaggagtat
ctaagactggttatattctgggcactaaatgaaggcgtttccaggcagtttgattcattc
agagatggatttgaatcagtcttcccactcagtcaccttcagtacttctatccggaagaa
ctggatcagctcctgtgtggcagtaaagcagacacttgggatgcaaagacactgatggaa
tgctgcaggccagatcacggttatactcatgacagtcgggctgtgaagttcttgtttgag
attctcagtagttttgataatgagcagcagaggttatttctccagtttgtgacaggtagc
ccaagattgcctgttggaggcttccggagcttgaatccacctttgacaattgtccggaag
accttcgaatcaacagagaacccagatgacttcctgccctccgtaatgacctgtgtgaac
taccttaagttgccggactattcgagcatcgagataatgcgagaaaagctgttgatggca
gcgagggaagggcagcagtcgttccatctttcctga
DBGET
integrated database retrieval system
