Phocoena sinus (vaquita): 116757052
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Entry
116757052 CDS
T07759
Symbol
SDC3
Name
(RefSeq) syndecan-3 isoform X1
KO
K16337
syndecan 3
Organism
psiu
Phocoena sinus (vaquita)
Pathway
psiu04514
Cell adhesion molecules
psiu04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
psiu00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04514 Cell adhesion molecules
116757052 (SDC3)
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
116757052 (SDC3)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
psiu00535
]
116757052 (SDC3)
Proteoglycans [BR:
psiu00535
]
Cell surface proteoglycans
Syndecan family (transmembrane HSPG)
116757052 (SDC3)
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Gene cluster
GFIT
Motif
Pfam:
Syndecan
Motif
Other DBs
NCBI-GeneID:
116757052
NCBI-ProteinID:
XP_032494244
Ensembl:
ENSPSNG00000007871
UniProt:
A0A8C9BLP2
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Position
1:complement(24582540..24620567)
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AA seq
442 aa
AA seq
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MKPGPPHRAGAAHGAGAGAGAAAGPGARGLLLPPLLLLLLAGRAAGAQRWRSENFERPVD
LEGSGDDDSFPDDELDDLYSGSGSGYFEQESGIETAMRFSPDVDLAVSTTPVVLPTMDIQ
PVGTPFEELPSERPTPGPATSPPLVTEVPEEPSQRATTISTPTATTAATTTGTPAVATVP
ATVATAAPSIPAAPPSTATTSIVRTTGIRRLLPLPLTTAATARATTPAVPSPPTTVAVLD
TEAPTPRLVNTATSRPRTLPRPATTQEPDIPEKSTLPLGTTAPGPTEVAQTPTPEFFLTT
IRDEPEVPVSGGPSGDFELPEEETTQPDTANEVVAVGGAAAKPSPPPGTLPKGARPGPGL
LDNAIDSGSSAAQLPQKSILERKEVLVAVIVGGVVGALFAAFLVTLLIYRMKKKDEGSYT
LEEPKQASVTYQKPDKQEEFYA
NT seq
1329 nt
NT seq
+upstream
nt +downstream
nt
atgaagcccggtccgccgcaccgcgccggggccgcccacggggctggcgctggggccggg
gccgcggccgggccaggggcccgcgggctgcttctgccgccgctgctgctgctgctgctg
gcggggcgcgccgcgggggctcagcgctggcgcagtgagaacttcgagaggcccgtggac
ctcgagggctctggggacgatgactccttccccgatgatgagctggatgacctctactcc
gggtcgggctcgggctacttcgagcaggagtcgggcatcgagacagccatgcggttcagc
ccagatgtggacctggcagtgtccaccacacccgtggtgctgcccaccatggacatccag
cctgtgggcaccccgtttgaagagctcccttctgagcgccccaccccagggccagccacc
agccccccattggtgacagaggtcccagaagagcccagccagagagccactaccatctcc
actcctacggcaaccactgctgccacaaccacagggaccccagctgtggccacagtgccc
gccacagtggccaccgccgcccccagcatccctgcagcacctccttccacggccaccacc
tccatcgtaaggaccaccggcatacggaggcttctgcctcttccactgaccacagcagcc
acagcccgggccaccaccccagcggtaccctcacctcccaccacagtggctgtcttggac
acagaggccccaacacccaggctggtcaacacagctacctccagaccaaggacccttccc
aggccagctaccacccaggagcctgacatccctgagaagagcaccctgcccctggggacc
actgcccctggacccacggaggtggctcagaccccaactccagagttcttcctcaccacg
atccgggatgagccagaggtgccagtgagtgggggacccagtggggactttgagctgccg
gaggaagagaccacacagccagacacagccaatgaggtggtggctgtgggtggggccgcg
gccaagccgtcacctccacctgggacgctgcccaagggtgcccgcccaggccctggcctc
ctggacaatgccatcgactcgggcagctcggcggctcagctgccacagaagagcatcctg
gagcggaaggaagtgctcgtagctgtgattgtgggcggggtggtgggcgccctctttgcc
gccttcctggtcacactgctcatctaccgcatgaagaagaaggacgagggcagctacacg
ctggaggagcccaaacaggcgagcgtcacataccagaagcccgacaagcaagaggagttc
tacgcctag
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