Phocoena sinus (vaquita): 116757141
Help
Entry
116757141 CDS
T07759
Symbol
BARD1
Name
(RefSeq) BRCA1-associated RING domain protein 1 isoform X1
KO
K10683
BRCA1-associated RING domain protein 1
Organism
psiu
Phocoena sinus (vaquita)
Pathway
psiu03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
psiu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
116757141 (BARD1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psiu03019
]
116757141 (BARD1)
04121 Ubiquitin system [BR:
psiu04121
]
116757141 (BARD1)
03036 Chromosome and associated proteins [BR:
psiu03036
]
116757141 (BARD1)
03400 DNA repair and recombination proteins [BR:
psiu03400
]
116757141 (BARD1)
Messenger RNA biogenesis [BR:
psiu03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Negative regulators of mRNA 3' end processing
116757141 (BARD1)
Ubiquitin system [BR:
psiu04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
BRCC complex
116757141 (BARD1)
Chromosome and associated proteins [BR:
psiu03036
]
Eukaryotic type
Centrosome formation proteins
Centrosome duplication proteins
Regulators of centriole replication
116757141 (BARD1)
DNA repair and recombination proteins [BR:
psiu03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-core complex
116757141 (BARD1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_6
Ank
Ank_4
Ank_2
Ank_3
Ank_5
BRCT
BRCT_2
zf-RING_5
ANK_LRRK2
zf-C3HC4
Ank_KRIT1
zf-C3HC4_2
RTT107_BRCT_5
zf-C3HC4_3
zf-C3HC4_4
Motif
Other DBs
NCBI-GeneID:
116757141
NCBI-ProteinID:
XP_032494429
Ensembl:
ENSPSNG00000017308
UniProt:
A0A8C9E7S2
LinkDB
All DBs
Position
7:22642669..22729386
Genome browser
AA seq
799 aa
AA seq
DB search
MRGNKQPRVRSGNEPHPTPAMEPAGRDAWAHSRAALYRLEKLLRCSRCTNILRDPVCLGG
CEHIFCSNCVSDCIGTACPVCYTPAWIQDVKINRQLDSMIQLCSKLRNLLHDTDFSDVKE
ETSRKSLFSDAEYKKNSIKMWFSPRSKKVRYVVSKVSVQTHPPVINDKNAQQASMYEFVS
TSPPVDVSERAKKASTKSGKKKKKKTLAEINQKWNLQKKAEKEDGKLDSEEEFKEKPVSF
CSQPSVTASPQINAKIDLLASGSITKSECFRSLTEVSLPLAEQIESPEIESRNEVVTPEK
TVCENKSPEIESRSEVVTPEKTLCENNLTSKKSLPSGHNGKRGRRNRLSSSVSKRCRSSS
PSTSENSIKQTVLSKNMPLPGCSSPPSKKLEVGDTVRRKSSNILDESISPSPGTPPSTLN
SPSYRRMMCSPSGMKLSPSSLMAMKRNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKD
HAGWTPLHEACNHGHLKVVELLLQHKALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGA
SRSAVNIFGLRPVDYTDSENMKSLLLLPEKNESSSTSHCSVVNTGQRRDGPLVLIGSGLS
SEQQQMLSELAAILKAKKCAEFDSTVTHVIVPGDTVQSTLKCMLGILSGCWILKFEWVKA
CLQRKEYEQEEKYEIPEGPRRSRLNREQLLPKLFDGCYFYFGGSFRHHPKDSLIKLVTAS
GGQILSRKPKPDSDVTQTINTVAYHAKPDSDQHFCTQYIIYEDLSNHLPERVRQGKVWIA
SSSWFIDCVMSFELIPLDS
NT seq
2400 nt
NT seq
+upstream
nt +downstream
nt
atgcgggggaacaagcagccgagggtccgctccgggaacgagcctcatcctacgcccgcc
atggagccggctggtcgcgacgcatgggcccacagccgcgccgcgctctaccggctggag
aagctgctgcgctgctcgcgttgcactaatattctgagggaccctgtgtgtttaggagga
tgtgagcacatcttctgtagtaattgtgtaagtgactgcattggaaccgcatgtccagtg
tgttacaccccagcctggatacaagatgtgaagataaatagacagttggacagcatgatc
cagctttgtagtaagcttcgaaatttgctacatgacactgatttttcagatgtgaaagaa
gaaacatctaggaaaagtttatttagtgatgcagaatataagaagaattcaataaaaatg
tggtttagtcctcgaagtaagaaggtcaggtatgttgtgagtaaagtttcagtgcaaact
catcctcctgtgataaacgataaaaatgctcagcaggcctccatgtacgaatttgtctct
acaagccctccagtggatgtttctgagagagctaagaaggcttccacaaaatctggaaaa
aaaaagaaaaagaaaactttggctgaaatcaaccaaaaatggaatttacagaaaaaggca
gaaaaagaagacggtaaacttgactccgaagaggaatttaaggaaaagccagtatccttc
tgtagccaaccatctgttactgctagtccgcagataaatgctaaaatagacttactagca
agtggctccataacaaaatctgaatgttttagaagcttaactgaagtctctttaccattg
gctgagcaaattgagtctccagaaattgagagcaggaatgaagtagtgactcctgagaag
actgtctgtgaaaacaagtctccagaaattgagagcaggagtgaagtagtgactcctgag
aagactctctgtgaaaacaatcttacatctaagaaatccttgccatcaggtcataatggg
aaacgtgggcgtcgcaacagactttccagttctgtttctaagagatgtagaagcagcagt
ccgagcaccagtgaaaattctattaagcaaacagtgctctcaaaaaacatgccattgcct
ggatgttcttcaccaccttcaaagaaacttgaagttggtgacacagtgaggaggaaaagc
agtaatatattagatgaatccattagcccttcaccaggtacgcccccttctacactgaat
agtccaagttacagacgaatgatgtgtagtccctcaggaatgaagctatcgcccagtagt
cttatggctatgaaaagaaatcatcgaggagagactttgctccatattgcttcaattaag
ggcgacataccttctgttgaatacctcttacaaaatggaagtgacccgaatgttaaagac
catgctggatggacaccattgcacgaagcctgcaatcacgggcacctgaaggtggtggaa
ttgctgctccagcacaaggcgttggtgaacaccactgggtatcagaatgactcacctctt
cacgacgcagccaagaatgggcacgtggatatagtcaagctgttactctcctatggagcc
tccaggagcgcggttaacatatttggtctgcggcctgtggattatacagacagtgaaaat
atgaaatcgctgttgctgctaccagagaagaatgaatcatcatcaactagccattgttca
gtagtaaacactggtcagcgcagggatgggcctcttgtacttataggcagtggactttct
tcagaacaacagcaaatgctcagtgagcttgcagcaattcttaaggctaaaaaatgtgct
gagtttgacagtacagtaactcatgtcattgttcctggtgatacagttcaaagcaccctg
aaatgtatgcttgggattctcagtggttgctggatcctaaaatttgaatgggtgaaagca
tgtctacaaagaaaagaatatgaacaggaagaaaagtatgaaattcctgaaggaccacgt
agaagcaggctcaacagagaacagctgttgccaaagctgtttgatggatgctatttctat
tttgggggaagcttcagacaccatccaaaggacagccttattaagcttgtcactgcatct
gggggacagatcctcagtagaaagcccaagccagacagtgacgtgactcaaaccatcaat
acagtcgcctaccatgccaaacctgattctgatcagcacttctgcacacagtatatcatc
tatgaggatttgtctaatcatctcccagagagagttaggcagggcaaagtctggatagct
tcttccagctggtttatagattgtgtgatgtcctttgagttgatccctcttgacagctga
DBGET
integrated database retrieval system
