Phocoena sinus (vaquita): 116757650
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Entry
116757650 CDS
T07759
Symbol
PCF11
Name
(RefSeq) pre-mRNA cleavage complex 2 protein Pcf11 isoform X1
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
psiu
Phocoena sinus (vaquita)
Pathway
psiu03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
psiu00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
116757650 (PCF11)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
psiu03021
]
116757650 (PCF11)
03019 Messenger RNA biogenesis [BR:
psiu03019
]
116757650 (PCF11)
Transcription machinery [BR:
psiu03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
116757650 (PCF11)
Messenger RNA biogenesis [BR:
psiu03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
116757650 (PCF11)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PCF11_RFEG_rpt
PCF11_charged
Pcf11_helical
CID
Pfc11_Clp1_ID
Pcf11_C
zf_PCFS4
SHOCT
Motif
Other DBs
NCBI-GeneID:
116757650
NCBI-ProteinID:
XP_032495506
Ensembl:
ENSPSNG00000021405
UniProt:
A0A8C9EBL8
LinkDB
All DBs
Position
8:complement(49692622..49720067)
Genome browser
AA seq
1686 aa
AA seq
DB search
MSEQTPAEAGTAGAREDACRDYQSSLEDLTFNSKPHINMLTILAEENLPFAKEIVSLIEA
QTAKAPSSEKLPVMYLMDSIVKNVGREYLTAFTKNLVATFICVFEKVDENTRKSLFKLRS
TWDEIFPLKKLYALDVRVNSLDPAWPIKPLPPNVNTSSIHVNPKFLNKSPEESSTPGTVV
SSPSISTPPIVPDIQKNLTQEQLIRQQLLAKQKQLLELQQKKLELELEQAKAQLAVSLSV
QQETSNLGPGTAQSKLHVSQIPPMAVKSPHQVPVQPEKSRPGPSLQIQDMKGTNRDPRLN
RLSQHSSHGKDQSHRKEFLMNTLSQSDIKTSKTVPSEKLNSSKQEKSKSGEKITKKELDQ
LDSKSKSKSKSPSPLKNKLSHTKDLKSQESESTRVSDMSKRDPRLKRHLQDKTDSKDDDL
KEKRKTAEKKDKDEHVKSSEHRLVGSRNKIINGIVQKQDTITEESEKQGTKPGRSSTRKR
SRSRSPKSRSPIIHSPKRRDRRSPKRRQRSMSPTSTPKAGKIRQSGVKQSHMEEFTPPSR
EERNAKRSTKQDVRDPRRIKKTEEERPQETANQHSTKSGTEPKENVENWQSSKSTKRWKS
GWEENKSLQQGDEHSKAPHLRHRESWSSTKGILSPRAPKQQHRLSVDANLQIPKELTLAS
KRELLQKTSERLASGEITQEDFLVVVHQIRQLFQYQEGKHRCNVRDSPTEENKGGLKKKP
LLTDAELTYYEHKAKLKRTQVQHSFPRLDLLDPDIFDYPLTDALLSGIECEPSKSKHASR
NSGAQFDRKEQFSERARRLSPISGSRTYAENLSPHEGRRRHDEQVSAKGVREEQRSPFND
RFPLKRPRYEDSDKPFVDSPASRFAGLDTNQRLTALAEDRPLYDGPSRPSVARDGPTKMI
FEGPNKLSPRIDGPPTPGSLRFDGSPGQMGGGGPLRFEGPQGQLGGGCPLRFEGPPGPVG
TPLRFEGPIGQAGGGGFRFEGSPGLRFEGSAGGLRFEGPGSQPVGSLRFEGHRGQPVGGL
RFEGPHGQPVGGLRFDNPRGQPVGGLRFEGGHGPSGAAIRFDGPHGQPSGGIRFEGPLLQ
QGVGMRFEGPHGQSVAGMRFEGQHNQLGGNVRFEGPHGQPGVGIRFEGPLVQQGGGMRFE
GPSVPGGGLRIEGPLGQGGPRFESCHALRFDGQPGQPSLLPRFDGLHGQPGPRFERTGQP
GPQRFDGPPGQQVQPRFDGVPQRFDGPQHQQASRFDIPLGLQGTRFDNHPSQRLESVSFN
QSGPYNDPPGNAFNAPSQGLQFQRHEQIFDSPQGPNFNGPHGPGNQSFSNPLNRASGHYF
DEKNLQSSQFGNFGNLPAPITVGNIQASQQVLTGVAQPVAFGQGQQFLPVHPQNPGAFVQ
NPSGVLPKGYPDNHLSQVDVNELFSKLLKTGILKLSQPDSATTQVNEVAAQPPAEEEEDQ
NEDQDVPDLTNFTIEELKQRYDSVINRLYTGIQCYSCGMRFTTSQTDVYADHLDWHYRQN
RTEKDVSRKVTHRRWYYSLTDWIEFEEIADLEERAKSQFFEKVHEEVVLKTQEAAKEKEF
QSVPAGPAGAVESCEICQEQFEQYWDEEEEEWHLKNAIRVDGKIYHPSCYEDYQNTSSFD
CTPSPSKTPVENPLNIMLNIVKNELQEPCESPKVKEERIDTPPACTEESIATATEIKTEN
DTVESV
NT seq
5061 nt
NT seq
+upstream
nt +downstream
nt
atgtcagagcagacgccggctgaggccggtactgcgggggcccgggaggacgcctgtcgg
gattatcagtcatcactcgaagacctgaccttcaatagcaaaccgcacatcaatatgctg
accattctagccgaggagaacctgcccttcgccaaggagatcgtctctctcatcgaggcc
caaaccgccaaggctccctcctcagagaagcttcctgttatgtaccttatggattctatc
gtgaaaaatgttggaagagagtatctcactgcctttactaaaaatctagttgcaacattt
atttgtgtgtttgaaaaggtggatgaaaatactagaaaaagtttatttaaattacgttcc
acctgggatgaaatattccctttgaagaaactttatgccctggatgtcagagtcaattcg
ttagatcctgcttggcctattaaacctctgccccccaatgtgaatacatctagcatccat
gtgaatcctaaatttttaaataaatcgcccgaagagtcttcaacacctggcacagtggtc
agttcccctagcatctccactcctccaattgttccggatatacaaaagaatcttacccaa
gagcaactaataaggcagcagttactggcaaaacaaaagcagttgttagaacttcagcag
aaaaagctggagcttgagctagagcaagctaaggcacaactggcagtttctcttagtgtt
cagcaggagacatccaacttaggtcctggaactgcacaatccaaattacatgtttcacaa
attccccctatggcagttaaatctccccatcaggttcctgtgcaacctgagaaaagtcgt
ccaggtccatccttacaaattcaggatatgaaaggaactaaccgggatccccgtcttaat
aggttgagtcaacattcttctcatggaaaagatcagagtcacaggaaggaattcctaatg
aacacattgagccagtctgatattaagacaagtaaaactgtaccctctgaaaaactaaat
tcatccaagcaagaaaaaagtaaatcaggtgaaaaaataaccaagaaagaacttgaccaa
ttagattctaaatccaaatctaaatctaaatcaccatcacctttgaaaaacaaattatcc
cacacaaaagacttgaaaagtcaagaatctgaaagtacaagggtgtctgatatgagcaag
agagatccaagattaaaaagacatcttcaggataagactgatagcaaagatgatgatcta
aaagagaagaggaaaactgcagaaaaaaaggataaagatgagcacgtgaaatcatctgaa
cacagactggtgggaagtagaaataaaatcataaatggcattgtacaaaaacaggatacc
ataacggaagaatcagaaaaacaggggacaaaaccagggagatcgagtactagaaagcga
tcaagatcacgatcacccaagtcccggtcaccgattatacattctcccaagagaagagat
aggcggtcacccaaacgaaggcaaaggagtatgtctccaacctcaacacccaaagctggg
aagattcgccagtcaggagttaagcagtcacatatggaagagtttacaccaccttccagg
gaagaaagaaatgcgaagagaagtactaaacaggatgttcgagatccaaggcgaataaaa
aagactgaagaggaacgaccacaagaaactgcaaatcagcattccaccaagtcaggcact
gaaccaaaggaaaatgtagaaaattggcaaagttccaagtctaccaaaagatggaaatct
ggttgggaagaaaataaaagtttacaacagggtgatgaacatagcaaagctcctcatcta
aggcatagggagagctggtcaagcactaaaggaatcttgtcacctcgagctccaaaacag
cagcatcgattaagcgtagatgccaatcttcagattcctaaagagttaactcttgcaagc
aaaagagaattacttcaaaagacgagtgaacgtttagcatctggtgaaattacacaggag
gacttccttgttgttgtgcatcaaattcgacagctatttcagtatcaagaaggtaaacat
agatgcaatgtacgggatagtcctacagaagaaaataaaggtggattaaaaaagaaacct
ctcttaactgatgctgaattaacctactatgaacataaagcaaaactgaaaaggacacag
gttcagcattcatttccaagacttgatctcttagatcctgatatttttgactaccctttg
actgatgccttgttgtctggaatagaatgtgagccatccaaaagtaaacatgcaagtagg
aatagtggagcacagtttgacagaaaagaacaatttagtgaaagagcaagacgtctttct
cctatatctgggagtcgtacttatgctgagaatctttcaccccatgagggccggagaaga
catgacgagcaagtctctgctaaaggtgtacgagaagagcagagatcaccattcaatgat
cgttttccacttaagcgacctagatatgaagattcagataaaccatttgtagatagccca
gcatcaagattcgccggccttgatacaaatcagcgacttacggctttagctgaagataga
ccattatacgatggacctagcaggccatcagtagcgagagatggcccaaccaagatgatt
tttgaaggacctaataagttaagccctagaattgatggacctcctacgccaggttctctt
cggtttgatgggtcaccaggacaaatggggggaggtggccctttgagatttgaaggacca
caaggccagttaggaggtgggtgtcctttgagatttgaaggtcctccgggaccagtaggg
acacctctgcggtttgaggggccaattggtcaagcaggaggaggtggttttcggtttgaa
ggttcccccggtctgcggtttgagggatctgcaggtggtttgcgatttgaaggaccaggg
tcccagcctgtgggtagtctcaggtttgagggacaccggggtcaacctgtgggtggtctg
aggtttgagggacctcatggtcagcctgtgggtggacttagatttgataatccccgaggt
cagcctgtaggtggacttagatttgagggaggtcatggtccatcaggggctgcaattagg
tttgatggacctcatggtcagccatcaggtgggatcagatttgagggcccattgctacag
cagggagttgggatgagatttgagggcccccatggtcagtcagtagctggtatgagattt
gaaggacaacataatcaacttggtgggaacgttaggtttgagggtccacacggtcagcca
ggggttgggatcaggtttgaaggacctttagtccaacaaggaggtggaatgaggtttgag
ggtccttctgtaccaggaggcggcctgagaattgaaggacctctgggtcaaggtggtcca
agatttgaaagttgtcatgctttaaggtttgatgggcaaccaggtcagccatcactcttg
ccaagatttgatggattacatggtcagccaggtcctagatttgaaagaactggtcagcca
ggcccgcagagatttgatggaccacctggacagcaggttcaaccaagatttgatggtgta
cctcaaagatttgatggtccacaacaccagcaagcatcaaggtttgatattcctcttggt
cttcaaggcacacgatttgacaatcatccttcacaaaggcttgaatcggtatctttcaat
cagagtggcccatataatgatccacctggcaatgcttttaatgccccatcccaaggactg
cagttccaaagacatgaacaaatatttgattcacctcaaggaccaaattttaatggacca
catggccctggaaaccagagtttctcgaatccccttaacagagcttctggacactatttt
gatgagaagaatcttcagagctctcagtttggaaactttggcaatttacctgctccaata
acagtaggaaatattcaggcatctcagcaggttctgactggtgttgctcagccagtagca
tttggccaaggacaacaatttttgccagttcatccacaaaatcctggagcatttgttcag
aatccttcaggtgtccttcctaagggatatcctgataatcatctcagccaggtggatgta
aatgaattgttttcaaaactgctaaaaacaggaattctcaaattgtcccagcctgattca
gctacaacacaagtaaatgaagttgctgctcagccccctgctgaggaggaagaagatcaa
aatgaagatcaagacgttccagatcttaccaattttacaattgaagaattgaaacaacgt
tatgatagtgttataaatcgactgtatactggtattcagtgttactcttgtggaatgagg
tttacaacatcacagacagatgtatatgcagatcacttggactggcattatcgacaaaat
agaactgaaaaagatgtaagcagaaaagtcactcatagacgttggtactacagtttaaca
gactggatagaatttgaggaaatagctgatctggaagaacgtgcaaagagccagtttttt
gaaaaggtgcacgaagaagtcgtgctcaaaactcaggaggctgctaaagaaaaggagttc
caaagtgtacctgctggaccagcaggagcagttgagagttgtgaaatttgtcaagaacaa
tttgaacagtactgggatgaagaagaggaggagtggcatttaaaaaatgctattagagta
gatggaaagatttatcatccgtcatgttatgaagattatcaaaatacatcttcatttgat
tgtacaccatctcccagcaagacaccagttgaaaatcccttgaacattatgttgaacatt
gttaaaaacgaattgcaggaaccctgtgaaagtcccaaagttaaggaagaacggattgat
actccaccagcttgtacagaggaaagcatagcaacagccactgaaattaaaacagaaaat
gacacagtcgagtcagtttaa
DBGET
integrated database retrieval system
