KEGG   Phocoena sinus (vaquita): 116757668
Entry
116757668         CDS       T07759                                 
Symbol
DDB1
Name
(RefSeq) DNA damage-binding protein 1 isoform X1
  KO
K10610  DNA damage-binding protein 1
Organism
psiu  Phocoena sinus (vaquita)
Pathway
psiu03420  Nucleotide excision repair
psiu04120  Ubiquitin mediated proteolysis
psiu05161  Hepatitis B
psiu05170  Human immunodeficiency virus 1 infection
psiu05203  Viral carcinogenesis
Brite
KEGG Orthology (KO) [BR:psiu00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    116757668 (DDB1)
  09124 Replication and repair
   03420 Nucleotide excision repair
    116757668 (DDB1)
 09160 Human Diseases
  09161 Cancer: overview
   05203 Viral carcinogenesis
    116757668 (DDB1)
  09172 Infectious disease: viral
   05170 Human immunodeficiency virus 1 infection
    116757668 (DDB1)
   05161 Hepatitis B
    116757668 (DDB1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:psiu04121]
    116757668 (DDB1)
   03400 DNA repair and recombination proteins [BR:psiu03400]
    116757668 (DDB1)
Ubiquitin system [BR:psiu04121]
 Ubiquitin ligases (E3)
  Multi subunit type E3
   Cul4 complex
    Adoptor protein
     116757668 (DDB1)
DNA repair and recombination proteins [BR:psiu03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     Cul4-DDB2 complex
      116757668 (DDB1)
    TCR (transcription coupled repair) factors
     Cul4-CSA complex
      116757668 (DDB1)
SSDB
Motif
Pfam: Beta-prop_RSE1_2nd CPSF_A Beta-prop_RSE1_1st Beta-prop_RIG_2nd Beta_propel
Other DBs
NCBI-GeneID: 116757668
NCBI-ProteinID: XP_032495559
Ensembl: ENSPSNG00000012899
LinkDB
Position
8:complement(100353030..100384173)
AA seq 1149 aa
MSYNYVVTAQKPTAVNGCVTGEAARAGDPGHFTSAEDLNLLIAKNTRLEIYVVTAEGLRP
VKEVGMYGKIAVMELFRPKGESKDLLFILTAKYNACILEYKQSGESIDIITRAHGNVQDR
IGRPSETGIIGIIDPECRMIGLRLYDGLFKVIPLDRDNKELKAFNIRLEELHVIDVKFLY
GCQAPTICFVYQDPQGRHVKTYEVSLREKEFNKGPWKQENVEAEASMVIAVPEPFGGAII
IGQESITYHNGDKYLAIAPPIIKQSTIVCHNRVDPNGSRYLLGDMEGRLFMLLLEKEEQM
DGTVTLKDLRVELLGETSIAECLTYLDNGVVFVGSRLGDSQLVKLNVDSNEQGSYVVAME
TFTNLGPIVDMCVVDLERQGQGQLVTCSGAFKEGSLRIIRNGIGIHEHASIDLPGIKGLW
PLRSDPNRETDDTLVLSFVGQTRVLMLNGEEVEETELMGFVDDQQTFFCGNVAHQQLIQI
TSASVRLVSQDPKALVSEWKEPQGKNISVASCNSSQVVVAVGRALYYLQIHPQELRQISH
TEMEHEVACLDITPLGDSSGMSPLCAIGLWTDISARIAKLPSFELLHKEMLGGEIIPRSI
LMTTFESSHYLLCALGDGALFYFGLNIETGLLSDRKKVTLGTQPTVLRTFRSLSTTNVFA
CSDRPTVIYSSNHKLVFSNVNLKEVNYMCPLNSDGYPDSLALANNSTLTIGTIDEIQKLH
IRTVPLYESPRKICYQEVSQCFGVLSSRIEVQDTSGGTTALRPSASTQALSSSVSSSKLF
SSSTAPHETSFGEEVEVHNLLIIDQHTFEVLHAHQFLQNEYALSLVSCRLGKDPNTHFIV
GTAMVYPEEAEPKQGRIVVFQYSDGKLQTVAEKEVKGAVYSMVEFNGKLLASINSTVRLY
EWTTEKELRTECNHYNNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEEIARDFNP
NWMSAVEILDDDNFLGAENAFNLFVCQKDSAATTDEERQHLQEVGLFHLGEFVNVFCHGS
LVMQNLGETSTPTQGSVLFGTVNGMIGLVTSLSESWYNLLLDMQNRLNKVIKSVGKIEHS
FWRSFHTERKTEPATGFIDGDLIESFLDISRPKMQEVVANLQYDDGSGMKREATADDLIK
VVEELTRIH
NT seq 3450 nt   +upstreamnt  +downstreamnt
atgtcgtacaactacgtggtaacggcacagaagcccaccgccgtgaacggctgcgtgacc
ggtgaggctgccagggcaggagaccccggacactttacttcagctgaagacttgaacctg
ttgattgccaaaaatacgagattagagatctatgtggtcactgctgagggacttcgaccc
gtcaaagaggtgggcatgtatgggaagattgctgtcatggagcttttcaggcccaagggg
gagagcaaggacctactgtttatcctgacagctaagtacaatgcctgcatcttggagtat
aagcagagtggcgagagcattgacatcataacgcgagctcatggcaatgtccaggaccga
attggccgcccctcagagacgggcattattggcatcattgaccctgagtgccgaatgatt
ggcctgcgactctatgatggccttttcaaggttattccactagaccgggacaataaagag
ctcaaggcctttaacatccgcctggaggagttgcatgttattgatgtcaagttcctatat
ggttgccaagcacctaccatctgctttgtctaccaggaccctcaggggcggcacgtaaaa
acctatgaggtgtctctccgagagaaggagttcaataagggcccttggaaacaggaaaac
gtagaagctgaagcttccatggtgattgcagtcccagagccttttggaggcgccatcatc
attggacaggaatcaatcacctatcacaacggtgacaaatacctggcgattgcccctccc
atcattaagcaaagcacaattgtgtgtcacaatcgcgtggaccccaatggctcccgttat
ctgctgggagacatggaaggacggctcttcatgctgcttttggagaaggaggaacagatg
gatggcaccgttaccctcaaggatctccgagtggaactccttggggagacctctattgct
gagtgcttgacataccttgataacggtgttgtgtttgtcgggtctcgccttggtgactcc
cagcttgtgaagctcaatgttgacagcaatgaacaaggctcctatgtagtggccatggaa
acctttaccaatttaggacccattgtggacatgtgtgtggtggacctggagaggcagggg
cagggacagctggtcacttgctctggggctttcaaggaaggctctttgcggatcatccgg
aatggaattggaatccacgagcatgccagcattgacttgccaggcatcaaaggcttatgg
cccctgcggtctgatcctaatcgggagactgatgacactttggtgctctcttttgtgggc
caaacaagagttctcatgttaaacggagaggaagtggaagaaactgaactgatgggtttt
gtggacgatcagcagactttcttctgtggcaatgtggctcatcagcaactcatccagatc
acttcagcatctgtgaggttggtctctcaagaccccaaagctctcgtcagtgagtggaag
gagcctcagggcaagaacatcagtgtggcctcctgcaatagcagccaggtagtagtagcc
gtgggaagggctctctactacctgcagatccatcctcaggagctccgacagatcagccac
acagagatggaacacgaagtggcctgcttggacatcacccctttaggggacagcagtgga
atgtcccctctttgtgctattggtctctggacagacatctcggcccgaatcgcgaagctg
ccctcttttgagctactgcacaaagagatgctgggtggagagatcattcctcgttctatc
ctgatgaccacctttgagagtagccactacctcctttgtgccttgggagatggggcgctt
ttctactttgggctcaacatcgagacaggcctgttgagcgaccgtaagaaggtgactctg
ggcacccagcccaccgtattgaggactttccgttctctttctaccaccaacgtctttgct
tgctctgaccgccccactgtcatctacagcagcaaccacaaattggtcttctccaacgtc
aacctcaaggaggtgaactacatgtgtcccctcaactcagatggctaccctgacagcctg
gcactggccaacaacagcaccctcaccattggcaccattgacgagatacagaagctgcac
attcgtacggttcccctctatgaatctcccaggaagatttgctaccaggaggtgtcccag
tgctttggggtcctctccagccgtattgaagtccaggacacgagtgggggcacaactgct
ctgaggcccagcgccagcacccaggccctgtccagcagcgtcagctccagcaagctgttc
tccagcagcacagcccctcacgagacctcctttggagaagaggtggaggtgcataacctc
cttatcattgaccagcacacctttgaagtgctccacgcccaccagttcctgcagaacgag
tacgccctcagcctggtctcttgcaggctgggcaaagaccccaacacgcacttcatcgtg
ggcacggccatggtgtaccctgaagaggcagagcccaagcagggtcgtattgtggtcttt
cagtattcagatggaaaactacagactgtggctgaaaaggaggtgaaaggggctgtgtac
tctatggtggaatttaacgggaagttgttagccagcatcaacagcacggtgcggctttac
gagtggacgacggagaaggagctccgcaccgagtgcaaccactacaacaacatcatggcc
ctgtacctgaagaccaagggcgacttcatcctggtgggcgacctgatgcgctcggtgctg
ctgctggcctacaagccaatggagggcaacttcgaagagattgctcgagactttaacccc
aactggatgagtgctgtggaaatcttggatgatgacaatttcctgggggctgaaaatgcc
tttaacttgtttgtgtgtcagaaggatagcgctgccaccactgacgaggagcggcagcac
ctccaggaggttgggctcttccacttgggcgagtttgtcaacgtcttttgccacggctct
ctggtcatgcagaatctgggcgagacctccacccctacccagggctcggtgctcttcggc
acggtcaacggcatgattggcctggtgacctcactgtcagagagctggtacaacctcttg
ttggatatgcagaatcgactcaataaagtcatcaaaagtgtgggcaagattgaacactcc
ttctggagatcctttcatactgaacggaagacagaaccagccacaggcttcattgatggg
gacttgattgagagtttcctggacatcagccggcccaagatgcaggaggttgtggcaaac
ctgcagtatgacgatggcagtggaatgaagcgagaagccactgcggatgacctgatcaag
gttgtggaggagttaactcggatccattag

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