KEGG   Phocoena sinus (vaquita): 116757742
Entry
116757742         CDS       T07759                                 
Symbol
DDB2
Name
(RefSeq) DNA damage-binding protein 2 isoform X1
  KO
K10140  DNA damage-binding protein 2
Organism
psiu  Phocoena sinus (vaquita)
Pathway
psiu03420  Nucleotide excision repair
psiu04115  p53 signaling pathway
psiu04120  Ubiquitin mediated proteolysis
psiu05161  Hepatitis B
psiu05169  Epstein-Barr virus infection
psiu05200  Pathways in cancer
psiu05202  Transcriptional misregulation in cancer
psiu05210  Colorectal cancer
psiu05212  Pancreatic cancer
psiu05213  Endometrial cancer
psiu05214  Glioma
psiu05216  Thyroid cancer
psiu05217  Basal cell carcinoma
psiu05218  Melanoma
psiu05220  Chronic myeloid leukemia
psiu05222  Small cell lung cancer
psiu05223  Non-small cell lung cancer
psiu05224  Breast cancer
psiu05225  Hepatocellular carcinoma
psiu05226  Gastric cancer
Brite
KEGG Orthology (KO) [BR:psiu00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    116757742 (DDB2)
  09124 Replication and repair
   03420 Nucleotide excision repair
    116757742 (DDB2)
 09140 Cellular Processes
  09143 Cell growth and death
   04115 p53 signaling pathway
    116757742 (DDB2)
 09160 Human Diseases
  09161 Cancer: overview
   05200 Pathways in cancer
    116757742 (DDB2)
   05202 Transcriptional misregulation in cancer
    116757742 (DDB2)
  09162 Cancer: specific types
   05210 Colorectal cancer
    116757742 (DDB2)
   05212 Pancreatic cancer
    116757742 (DDB2)
   05225 Hepatocellular carcinoma
    116757742 (DDB2)
   05226 Gastric cancer
    116757742 (DDB2)
   05214 Glioma
    116757742 (DDB2)
   05216 Thyroid cancer
    116757742 (DDB2)
   05220 Chronic myeloid leukemia
    116757742 (DDB2)
   05217 Basal cell carcinoma
    116757742 (DDB2)
   05218 Melanoma
    116757742 (DDB2)
   05213 Endometrial cancer
    116757742 (DDB2)
   05224 Breast cancer
    116757742 (DDB2)
   05222 Small cell lung cancer
    116757742 (DDB2)
   05223 Non-small cell lung cancer
    116757742 (DDB2)
  09172 Infectious disease: viral
   05161 Hepatitis B
    116757742 (DDB2)
   05169 Epstein-Barr virus infection
    116757742 (DDB2)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:psiu04121]
    116757742 (DDB2)
   03400 DNA repair and recombination proteins [BR:psiu03400]
    116757742 (DDB2)
Ubiquitin system [BR:psiu04121]
 Ubiquitin ligases (E3)
  Multi subunit type E3
   Cul4 complex
    Target recognizing subunit (DCAF)
     116757742 (DDB2)
DNA repair and recombination proteins [BR:psiu03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     Cul4-DDB2 complex
      116757742 (DDB2)
SSDB
Motif
Pfam: WD40_CDC20-Fz WD40 WD40_Prp19 WD40_WDHD1_1st Beta-prop_EML_2 Beta-prop_WDR75_1st Beta-prop_RIG_2nd WDR55 Beta-prop_IFT140_1st Beta-prop_WDR90_POC16_2nd Beta-prop_EIPR1 Beta-prop_WDR19_1st Beta-prop_TEP1_2nd EIF3I Beta-prop_CAF1B_HIR1 Beta-prop_TEP1_C WD40_MABP1-WDR62_2nd WD40_RFWD3 NBCH_WD40 Beta-prop_Vps41 Beta-prop_EML Beta-prop_HPS5 WD_LRWD1
Other DBs
NCBI-GeneID: 116757742
NCBI-ProteinID: XP_032495780
Ensembl: ENSPSNG00000006057
LinkDB
Position
8:97252043..97273857
AA seq 457 aa
MAPRKRPETQKTPEVVVRPKSKRNRSPWELEPEAKKLCLKGPGPSRRFDSGCLWAGLASL
RVPPPCSIVRALHQHKLGTAAWPSLQQGLQQSFLNSLASYRIFQKAAPFDRRATSLAWHP
THPSTLAVGSKGGDILLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFFTSSMEGTT
RLQDFKGNTLRVFASSGTCNFWFCSLDVSVRSRVVVTGDNVGNVILLNMDGRELWNLRMH
KKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKSSFLYSLLHRHPVNAAHFSPDGA
QLLTTDQKSEIRVYSASQWDCPPSVIPHPHRHFQHLTPIKATWHPRYNLIVVGRYPDPNF
KSCTSHELRTIDVFDGSSGKMMYQLYDPESSGIMSVRLGPSNNNGRKQGFTLPYWIKNDQ
KLILMCPSPSTLIPSSCLSPCLCSSMSSIPWGTHWPL
NT seq 1374 nt   +upstreamnt  +downstreamnt
atggctcccaggaaacgcccagaaacccagaagacccccgaggtggttgtgcgccccaag
agcaagaggaacagaagcccctgggagctggagcccgaggccaagaagctctgtttgaag
ggccccggtcctagcagaagatttgactcaggctgcctttgggcggggttggctagcctg
cgggtcccgccaccatgcagcatcgtcagggccctccaccagcataagctgggcacagct
gcctggccatcactacagcagggtctccagcagtcctttttgaactctctggcttcttac
cggatattccaaaaggctgccccttttgacaggagggccacatccctggcgtggcaccca
actcaccccagcaccctggctgtgggttccaaagggggagatatcttgctctggaacttt
ggcataaaggacaaacccaccttcattaaagggattggagctggagggagcatcactggg
ctgaagtttaaccctctcaataccaaccagtttttcacctcctcaatggagggaacaact
aggctgcaagactttaaaggcaacactctccgagtttttgccagctcaggcacctgcaac
ttctggttttgcagcctggatgtgtctgtcagaagccgagtggtggtcacaggagataac
gtggggaacgtgatcctgctgaacatggacggcagggagctttggaatctgagaatgcac
aaaaagaaagtgacccacgtggccctgaacccgtgctgtgattggttcctggccacagcc
tccgtagatcaaacagtgaaaatctgggacctgcgccaggttagagggaaatccagcttc
ctctactcgctgctgcacaggcatcccgtcaacgcagctcatttcagtcccgacggtgcc
cagctcctgaccactgaccagaagagtgagatccgtgtttactctgcctcccagtgggac
tgccccccaagcgtgatcccacaccctcatcgtcacttccagcacctgacacccatcaag
gcaacctggcatcctcggtacaacctcattgtcgtgggccgatacccagatcctaatttc
aaaagttgtacctcccatgaattaaggacgatcgatgtgtttgacggaagctcaggaaag
atgatgtatcagctgtatgacccagaatcttctggtatcatgtcggtgaggcttgggccc
tcaaataataatgggaggaagcagggattcaccttaccttattggatcaaaaacgaccag
aaattaatccttatgtgcccttctcccagtaccctcattccctcctcatgcttatcccct
tgtctctgcagctcaatgagttcaatcccatgggggacacactggcctctgtga

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