Phocoena sinus (vaquita): 116758009
Help
Entry
116758009 CDS
T07759
Symbol
COPB1
Name
(RefSeq) coatomer subunit beta isoform X1
KO
K17301
coatomer subunit beta
Organism
psiu
Phocoena sinus (vaquita)
Brite
KEGG Orthology (KO) [BR:
psiu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
psiu04131
]
116758009 (COPB1)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
psiu04147
]
116758009 (COPB1)
Membrane trafficking [BR:
psiu04131
]
Endoplasmic reticulum (ER) - Golgi transport
Retrieval pathways
Coat protein complex I (COP-I)
116758009 (COPB1)
Exosome [BR:
psiu04147
]
Exosomal proteins
Exosomal proteins of colorectal cancer cells
116758009 (COPB1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Adaptin_N
Coatomer_b_Cpla
Coatamer_beta_C
HEAT
HEAT_2
Cnd1
HEAT_EZ
Arm
MMS19_N
AP4E_app_platf
Motif
Other DBs
NCBI-GeneID:
116758009
NCBI-ProteinID:
XP_032496478
Ensembl:
ENSPSNG00000005475
UniProt:
A0A8C9B926
LinkDB
All DBs
Position
8:complement(68586378..68618811)
Genome browser
AA seq
953 aa
AA seq
DB search
MTAAENVCYTLINVPMDSEPPSEISLKNDLEKGDVKSKTEALKKVIIMILNGEKLPGLLM
TIIRFVLPLQDHTIKKLLLVFWEIVPKTTPDGRLLHEMILVCDAYRKDLQHPNEFIRGST
LRFLCKLKEAELLEPLMPAIRACLEHRHSYVRRNAVLAIYTIYRNFEHLIPDAPELIHDF
LVNEKDASCKRNAFMMLIHADQDRALDYLSTCIDQVQTFGDILQLVIVELIYKVCHANPS
ERARFIRCIYNLLQSSSPAVKYEAAGTLVTLSSAPTAIKAAAQCYIDLIIKESDNNVKLI
VLDRLIELKEHPAHERVLQDLVMDILRVLSTPDLEVRKKTLQLALDLVSSRNVEELVIVL
KKEVIKTNNVSEHEDTDKYRQLLVRTLHSCSVRFPDMAANVIPVLMEFLSDSNEAAAADV
LEFVREAIQRFDNLRMLIVEKMLEVFHAIKSVKIYRGALWILGEYCSTKEDIQSVMTEVR
RSLGEIPIVESEIKKEAGELKPEEEITVGPVQKLVTEMGTYATQSALSSSRPTKKEEERP
PLRGFLLDGDFFVAASLATTLTKVALRYVALVQEKKKQNSFVAEAMLLMATILHLGKSSL
PKKPITDDDVDRISLCLKVLSECSPLMNDIFNKECRQSLSHMLSAKLEEEKLSQKKESEK
RNVTVQPDDPISFMQLTAKNEMNCKEDQFQLSLLAAMGNTQRKEAADPLASKLNKVTQLT
GFSDPVYAEAYVHVNQYDIVLDVLVVNQTSDTLQNCTLELATLGDLKLVEKPSPLTLAPH
DFANIKANVKVASTENGIIFGNIVYDVSGAASDRNCVVLSDIHIDIMDYIQPATCTDAEF
RQMWAEFEWENKVTVNTNIVDLNDYLQHILKSTNMKCLTPEKALSGYCGFMAANLYARSI
FGEDALANVSIEKPIQQGPEAPVTGHIRIRAKSQGMALSLGDKINLSQKKTSI
NT seq
2862 nt
NT seq
+upstream
nt +downstream
nt
atgacggctgctgagaacgtatgctatacgttaattaacgtgccgatggattcagaacca
ccttctgaaattagcttaaaaaatgatctagaaaaaggagatgtgaagtcaaagactgaa
gctttgaagaaagtaatcattatgattctaaatggtgaaaagcttcctggacttctgatg
actatcattcgctttgtgctgcctcttcaggatcacaccatcaaaaaattacttctggta
ttttgggaaattgttcctaaaacaactccagatgggagacttttacacgaaatgatcctt
gtatgtgatgcatatagaaaggaccttcaacatcctaatgaatttattcgaggatctact
cttcgttttctttgcaaattgaaagaggcagaattgctggaacctttaatgccagctatc
cgtgcttgtttggagcatcgacacagctatgttagaagaaatgctgttttggccatctat
actatctatagaaattttgaacatcttatacctgatgctcctgaactgatacatgatttt
ctggtgaatgagaaggatgcaagttgcaaaagaaatgcatttatgatgcttattcatgcc
gatcaggatcgagctttggattacctaagtacttgtattgatcaagttcagacatttgga
gacattcttcagttggttattgttgaactaatttataaggtctgtcatgctaatccatca
gaaagggctcgtttcattcgctgcatctataacttactacagtcatctagccctgctgta
aaatatgaagccgctggaacattagtgacactctctagtgcacctactgcaatcaaggct
gctgctcagtgttacattgacttaattattaaggagagtgacaacaatgtaaagctcata
gttctggatcgattgatagaactgaaagaacatcctgctcatgaacgagtactacaggat
ctggttatggacatcctaagagtactgagcacaccagacttagaagtacgcaagaaaact
ctgcagttagcactggatcttgtctcctctaggaatgtcgaagagctggttattgtcctt
aagaaggaagtgattaaaacaaataatgtgtcagagcatgaagatactgacaaatacaga
caactccttgtgcgaacattgcattcctgttctgtccgatttccagatatggctgcaaat
gttattcctgtgttaatggaatttctcagtgacagtaatgaagcagcagctgctgatgtc
ttggagtttgttcgtgaagccattcagcgctttgataacctgagaatgcttattgttgag
aagatgcttgaagtctttcatgctatcaaatctgtcaagatttaccgaggagcattatgg
atcctgggagaatactgtagtaccaaggaagacattcagagtgtgatgactgaggtccgc
aggtcccttggggagatcccaattgtagagtcagaaattaaaaaagaagctggtgaatta
aaacctgaagaagaaataactgtggggccagttcagaagttggtaactgaaatgggcacc
tatgcaacacagagtgcccttagcagttccagacccaccaagaaagaggaagaaagacct
cccctgcgaggattccttctggatggagatttctttgtggctgcctcgcttgccacaact
ctgaccaaggttgccttgcgctatgtagctttggttcaggagaagaaaaagcaaaattct
tttgttgctgaggccatgttgctcatggccactatcctgcatttgggaaaatcctctctt
cctaagaagccaattacagatgatgatgtagatcgaatttccctgtgcctcaaggtctta
tctgaatgctcacctttaatgaatgacattttcaataaggaatgcagacagtccctttct
cacatgttatctgctaaacttgaagaagagaaattatcccaaaagaaagaatctgaaaag
aggaatgtgacagtacagcctgatgaccccatttccttcatgcaactaactgctaagaat
gaaatgaactgcaaggaagatcagtttcagctgagtttgctggcagcaatgggtaacaca
cagaggaaagaggcagcagatcccctagcatctaaacttaacaaggtcacccaattaaca
ggtttctcagaccctgtatatgcagaagcttatgttcatgtcaaccagtatgatatcgtc
ctggacgtacttgttgtgaaccaaaccagtgataccttgcagaactgcacgttagagtta
gctactctgggggacctgaaacttgtggaaaagccatctcctttgactcttgctccacat
gactttgcaaatattaaagctaatgtgaaagtagcatcaacagaaaatggaataattttt
ggcaatatagtttatgatgtctctggagcagcaagtgacagaaattgtgtggtcctcagt
gatattcacattgacatcatggactatatccaacctgcaacttgcactgatgctgaattc
cgtcagatgtgggccgaatttgaatgggagaacaaagtgacggttaacacaaatatagtt
gatttaaatgactatttacagcacatattaaagtcaaccaacatgaaatgcctcactcca
gagaaggcactttctggttactgtggctttatggcagccaacctctatgctcgttccata
tttggagaagatgcacttgcaaatgtcagcattgagaagccgattcaacagggaccagag
gcccctgttactggccacataagaattcgtgcaaagagtcagggaatggccttaagtctt
ggagataaaatcaacttgtctcagaagaaaactagtatataa
DBGET
integrated database retrieval system
