Phocoena sinus (vaquita): 116758050
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Entry
116758050 CDS
T07759
Symbol
ATG16L2
Name
(RefSeq) autophagy-related protein 16-2 isoform X1
KO
K20868
autophagy-related protein 16-2
Organism
psiu
Phocoena sinus (vaquita)
Pathway
psiu04140
Autophagy - animal
psiu04145
Phagocytosis
Brite
KEGG Orthology (KO) [BR:
psiu00001
]
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagocytosis
116758050 (ATG16L2)
04140 Autophagy - animal
116758050 (ATG16L2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
psiu04131
]
116758050 (ATG16L2)
03029 Mitochondrial biogenesis [BR:
psiu03029
]
116758050 (ATG16L2)
Membrane trafficking [BR:
psiu04131
]
Autophagy
Autophagosome formation proteins
Atg12 conjugation proteins
116758050 (ATG16L2)
Others
Specific organelles associated proteins
Auto phagosome
116758050 (ATG16L2)
Mitochondrial biogenesis [BR:
psiu03029
]
Mitochondrial quality control factors
Mitophagy factors
Autophagy-related proteins
116758050 (ATG16L2)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
ATG16
Beta-prop_WDR5
Beta-prop_WDR3_1st
Beta-prop_THOC3
WD40
Beta-prop_IFT122_1st
WD40_Prp19
WD40_CDC20-Fz
WD40_WDHD1_1st
Beta-prop_EML_2
Beta-prop_WDR3_2nd
Beta-prop_TEP1_2nd
EIF3I
WDR55
WD40_Gbeta
Beta-prop_WDR36-Utp21_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_WDR36-Utp21_1st
Beta-prop_CAF1B_HIR1
Beta-prop_EML
DSE1_N
WDR90_beta-prop_4th
Beta-prop_Aladin
Beta-prop_TEP1_C
Rod_CreS
NBCH_WD40
Beta-prop_VPS8
Beta-prop_IFT140_1st
Beta-prop_WDR75_1st
Beta-prop_DCAF12
Beta-prop_WDR90_POC16_2nd
CFAP251_N
Beta-prop_NWD2_C
Beta-prop_SCAP
WD40_RFWD3
ASA1
DUF5693
WIP_coiled_coil
GLUCM-like_C
Motif
Other DBs
NCBI-GeneID:
116758050
NCBI-ProteinID:
XP_032496565
Ensembl:
ENSPSNG00000008907
LinkDB
All DBs
Position
8:complement(59384888..59402408)
Genome browser
AA seq
626 aa
AA seq
DB search
MAGPSDPGVPAARWKRHIVRQLRQRDRTQKALFLELVPAYNRLLEKAELLAQFSEKLQPE
PTDVTRALHQGGWEEESGPDSDGVPSPAALRVKWQEEEEGLRLVCGEMAYQVVEKSAALG
TLESQLEERQSRLAALEARVAQLQEAREKQEGQVDARRALNAAQRAAYEALRVHVGHQEA
ALRRLEEEARDLLDRLVRRKARAAAERNLRNERRERKFFYPRAKQARVSQELKKAAKRTV
SISESPDTLGDGIREEADTLALAAEPAFLESEAGEKWKRPFRSASATSLTLSRCVDVVKG
LLDFKKRRGHSVGGAPEQRYQSIPVCVAARLPTRAQDVLDAHLSEVNAVRFGPSSSLLAT
GGADRLILLWNIVGGRLEANQTLEGAGGSITSVDFDPSGSQVLAATYNKAAQLWKVGEAQ
SKETLSGHTDKVTAAKFKLTMHQAVTGSRDRTVKEWDLGRAYCSRTINVLSYCNDVVCGD
HVIISGHNDQKIRFWDSRGPRCTQVIPVQGRVTSLSLSHDQLHLLSCSRDDTLKVIDLRV
SNVRQVFRADGFRCGSDWTKAVFSPDRSYALAGSWDGALYIWDVDTGKLESSLRGPHCAA
VNAVAWCYSGSHVVSVDQARKVVLWH
NT seq
1881 nt
NT seq
+upstream
nt +downstream
nt
atggcggggcccagcgaccctggcgtcccagccgcccgctggaaacgccacatcgtgcgg
cagcttcgacagcgagaccgaacgcaaaaggccctcttcctggagctggtgccggcctat
aaccgtctcctagagaaagcggagctgctggcccagttctcagagaagctgcagccagag
cccaccgatgtcactcgggctctccaccagggcggctgggaggaggagtcagggcctgac
tcagacggagtcccatcaccagcagctctgagggtgaagtggcaagaggaagaggagggg
ctccggctggtgtgtggagagatggcctaccaggtggtggagaagagcgcagccctgggc
accctggagtcacagctggaggagcggcaaagcaggctggcagctctggaggcccgcgtg
gcgcagctgcaggaggcgcgggagaagcaggagggacaggtggatgcgcggcgcgcgctg
aacgcggcacagcgggcggcctatgaggcgctgcgcgtgcacgtcgggcaccaggaggcg
gctctgcgcaggctcgaggaggaggcacgcgacctgctggatcggctggtgcggcgcaag
gcgcgcgccgcagccgagcgcaacctgcgcaacgagcgccgcgagaggaagtttttctat
cccagggccaagcaggcgcgggtgtcccaggagctgaagaaggcagccaagcggacagtg
agcataagcgagagcccagacacattaggcgatgggatcagagaggaagcagacactctg
gctctggcagctgagccagcgttcctggagagtgaggctggtgagaaatggaagaggccc
ttcaggtctgcctccgccacctccctgacgttgtcccgctgtgtggatgtggtgaagggg
cttctggatttcaagaagaggagaggccactcagttgggggagcccctgagcagcgatac
cagagcatccctgtgtgcgtggccgcccgacttcctacccgagctcaggatgtgctggat
gcccacctctctgaggtcaatgctgttcgttttggccccagtagcagcctcctggccact
ggaggggctgaccgcctcatcctcctctggaatatcgtgggagggcgcctggaggccaac
cagacccttgaaggagctggcggcagcatcaccagtgtggactttgacccctcgggctcc
caggtactggcagctacttacaataaggccgcccagctttggaaggttggggaggcacag
tccaaggagacactatctggacacacagacaaggtgacggctgccaaattcaagctaacg
atgcatcaggcggtgaccgggagccgggaccggacagtgaaggagtgggacctaggccga
gcctactgttccaggaccatcaatgtcctttcctactgtaacgatgtggtgtgtggggac
catgtcatcattagtggtcacaatgaccagaagatccggttctgggacagcaggggaccc
cgctgcacccaggtcatccctgtgcagggccgggtcacctccctgagcctcagccacgac
cagctgcatctgctcagctgttcccgagatgacacgctcaaggtcatcgacctgcgtgtc
agcaatgtccgccaggtgttcagggctgatggcttcaggtgcggttctgactggaccaaa
gctgtgttcagcccagacagaagctacgcactggcaggttcctgggatggagctctttac
atctgggatgtagacactgggaaactggagagtagccttcggggaccccattgcgccgcc
gtcaatgccgtggcctggtgctactctgggagccacgtggtgagcgtggaccaagccagg
aaggttgtgctctggcattag
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integrated database retrieval system
