Phocoena sinus (vaquita): 116758152
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Entry
116758152 CDS
T07759
Symbol
DSCAML1
Name
(RefSeq) Down syndrome cell adhesion molecule-like protein 1 isoform X1
KO
K06768
Down syndrome cell adhesion molecule-like protein 1
Organism
psiu
Phocoena sinus (vaquita)
Brite
KEGG Orthology (KO) [BR:
psiu00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
psiu04515
]
116758152 (DSCAML1)
Cell adhesion molecules [BR:
psiu04515
]
Immunoglobulin superfamily
DSCAM family
116758152 (DSCAML1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
I-set
Ig_3
Ig_2
fn3
ig
Ig_DSCAM-DSCAML_C
V-set
C2-set_2
Pur_ac_phosph_N
C1-set
Ig_6
V-set_CD47
Receptor_2B4
Interfer-bind
fn3_2
ChitinaseA_N
Motif
Other DBs
NCBI-GeneID:
116758152
NCBI-ProteinID:
XP_032496762
Ensembl:
ENSPSNG00000004034
LinkDB
All DBs
Position
8:14679262..15026172
Genome browser
AA seq
2050 aa
AA seq
DB search
MWLVTFLLLLDSLHKARPEDVGTSLYFVNDSLQQVTFSSSVGVVVPCPAAGSPSAALRWY
LATGDDIYDVPHIRHVHANGTLQLYPFSPSAFNSFIHDNDYFCTAENAAGKIRSPDIRVK
AVFREPYTVRVEDQRSMRGSVAVFKCLIPSSVQEYVSVVSWEKDTVAIIPENRFFITYHG
GLYISDVQKEDALSTYRCITKHKYSGETRQSNGARLSVTDPAESIPTILDGFHSQEVWAG
LNMELPCTASGYPIPAIRWLKDGRPLPADSRWTKHITGLTISDLRTEDSGTYICEVTNTF
GSAEATGTLTVIDPLHVTLTPKKLKTGIGSTVILSCALTGSPEFTIRWYRNTELLLPNEA
ISIRGLSNETLLITSAQKSHSGAYQCFATRKAQTAQDFAIVVLEDGTPRIVSSFSEKVVN
PGEQFSLMCAAKGAPPPTVTWALDDEPIMRDGSHRTSQYTMSDGTTISHMNVTGPQIRDG
GVYRCTARNSVGSAEYQARINVRGPPSIRAMRNITAVAGRDTLINCRVIGYPYYSIKWYK
DALLLPDNHRQVVFENGTLKLTDVQKGMDEGEYLCSVLIQPQLSISQSVHVAVKVPPLIQ
PFEFPPASIGQLLYIPCVVSSGDMPIRITWRKDGQVIISGSGVTIESKEFMSSLQISSVS
LKHNGNYTCIASNTAATVSRERQLIVRVPPRFVVQPNNQDGIYGKAGVLNCSVDGYPPPK
VMWKHAKGSGNPQQYHPVPLTGRIQILPNSSLLIRHVLEEDIGYYLCQASNGVGTDISKS
MFLTVKIPAMITSHPNTTIAIKGHAKELNCTARGERPIIIRWEKGDTVIDPDRVMRYAIA
TKDNGDEVVSTLKLKPADRGDSVFFSCHAINSYGEDRGLIQLTVQEPPDPPELEIREVKA
RSMNLRWTQRFDGNSIITGFDIEYKNKSDSWDFKQSTRNISPTINQANIVDLHPASVYSI
RMYSFNKIGRSEPSKELTISTEEAAPDGPPMDVTLQPVTSQSIQVTWKAPKKELQNGVIR
GYQIGYRENSPGSNGQYSIVEMKATGDSEVYTLDNLKKFAQYGVVVQAFNRAGTGPSSSE
INATTLEDVPSQPPENVRALSITSDVAVISWSEPPRSTLNGVLKGYRVIFWSLYVDGEWG
EMQNITTTRERVELRGMEKFTNYSVQVLAYTQAGDGVRSSVLYIQTKEDVPGPPAGIKAV
PSSASSVVVSWLPPTKPNGVIRKYTIFCFSPGSGQPAPSEYETSPEQLFYRIAHLNRGQQ
YLLWVAAVTSAGRGNGSEKVTIEPAGKAPAKIISFGGTVTTPWMRDVRLPCNSVGDPAPA
VKWTKDSEDSAIPVSMDGHWLIHTNGTLLLRAVKAEDSGYYTCTATNTGGFDTIIVNLLV
QVPPDQPRLTVSKTSASSITLTWIPGDNGGSSIRGFVLQYSVDNSEEWKDVFVSSSERSF
RLDSLKCGTWYKVKLAAKNSVGSGRISEIIEAKTHGREPSFSKDQHLFTHINSTHARLNL
QGWSNGGCPITAIVLEYRPKGTWAWQGLRANRSGEVFLTELREATWYELRMRACNSAGCG
NETAQFATLDYDGSTIPPIKSAQGEGDDVKKLFTIGCPVILATLGVALLFIVRKKRKEKR
LKRLRDAKSLAEMLISKNNRSFDTPVKGPPQGPRLHIDIPRVQLLIEDKEGIKQLGDDKA
TIPVTDAEFSQAVNPQSFCTGVSLHHPALIQSTGPLIDMSDIRPGTNPVSRKNVKSAHST
RNRYSSQWTLTKCQASTPARTLTSDWRTVGSQHGVTVTESDSYSASLSQDTDKGRNSMVS
TESASSTYEELARAYEHAKLEEQLQHAKFEITECFISDSSSDQMTTGTNENADSMTSMST
PSEPGICRFTASPPKPQDADRGKNVAVPIPHRANKSDYCNLPLYAKSEAFFRKADGREPC
PVVPPREASIRNLARTYQPQARHLTLDPASKPLGLPHPGAAATATLPQRTLAMPAPPAGT
APPAPGPTPAEPPAAPSAAPPAPSTEPPRAGGPHTKMGGSRDSLLEMSTSGVGRSQKQGA
GAYSKSYTLV
NT seq
6153 nt
NT seq
+upstream
nt +downstream
nt
atgtggctggtaactttcctcctgctcctggactctttacacaaagcccgccctgaagat
gtcggcaccagcctctactttgtaaatgactccttgcagcaggtgaccttctccagctcc
gtgggggtggtggtgccctgcccggccgcgggctcccccagtgcggcccttcgatggtac
ctggccacgggggacgacatctacgacgtgccacacatccggcacgtccacgccaacggg
acgctgcagctctaccccttctccccctccgccttcaatagctttatccacgacaatgac
tacttctgcaccgcggagaatgctgccggcaagatccggagtcccgacatccgcgtcaaa
gcagttttcagggaaccctacaccgttcgggtggaggatcaaaggtcgatgcgtggaagc
gtggctgtcttcaagtgcctcatcccctcttcagtgcaggaatacgttagcgttgtgtcc
tgggagaaagacacagtcgccatcatcccagaaaacaggttttttattacttaccacggc
gggctgtacatctctgacgtgcagaaggaggacgccctctccacctaccgctgcatcacc
aagcacaagtatagcggggagacccggcagagcaacggggcccgcctctccgtgacagac
ccggccgagtcgatccccaccatcctggacggcttccactcccaggaagtgtgggccggc
ctcaacatggagctgccctgcaccgcctctggctaccccatccctgccatccgctggctc
aaggatggccgacccctcccagctgatagccgctggaccaagcacatcacggggctgacc
atcagtgacctgcggaccgaggacagcggcacctatatctgtgaggtcaccaacaccttc
ggctcagcagaggccacaggcaccctcacagtcatcgaccctcttcatgtgaccctgaca
ccaaagaagctgaagaccggcattggcagcacggtcatcctctcctgcgccctgacgggc
tccccggagttcaccattcgctggtaccgcaacaccgagctgctgctgcccaacgaggcc
atctccatccgcgggctcagcaacgagaccctgctcatcacctcggcccagaagagccac
tccggggcctaccagtgcttcgccacccgcaaagcccagaccgcccaggacttcgccatc
gttgtgctcgaggacggcacgccccgcatcgtctcgtccttcagcgagaaggtggtcaac
cccggggagcagttctcactgatgtgcgcagccaagggcgccccgccccctaccgtcacc
tgggccctggacgacgagcccatcatgcgggacggaagccaccgcaccagccagtacacc
atgtccgacggcaccaccatcagccacatgaatgtcacggggccccagatccgcgacggg
ggcgtgtaccggtgcacggcacggaactcggtgggcagtgctgaatatcaggcgcgaata
aacgtaagaggcccccccagcatccgggcgatgaggaacatcacagctgtcgccgggcgg
gacacccttatcaactgcagggtcatcggctacccctactactccatcaagtggtataag
gatgccctcctgttgcccgacaaccaccgccaggtggtgttcgagaacgggaccctcaaa
ctgactgatgtgcagaagggcatggacgaaggggagtacctgtgcagcgtcctcatccag
ccgcagctctccatcagccagagcgtccacgtggccgtcaaagtgccccctctcatccag
cccttcgaattcccgcctgcctccattggccagctgctctacatcccctgcgtggtgtcc
tcgggggacatgcccatccgcatcacctggaggaaagatggacaggtgatcatctcaggc
tcgggcgtgaccatcgagagcaaggaattcatgagctccctgcagatctccagcgtctcc
ctcaagcacaatggcaactacacatgcatcgccagcaacacagcggccaccgtgagcagg
gaacgccagctcatcgtgcgcgtgccccctcgattcgtggtgcagcccaacaaccaggat
ggcatctatggcaaggctggtgtgctcaactgctcggtggacggctaccccccacccaag
gtcatgtggaagcatgccaaggggagcgggaacccccagcagtaccacccagtgcccctt
accggccgcatccagatcctacccaacagctcgctactgatccgccacgtcctggaagag
gacatcggctactacctctgccaggccagcaacggcgtgggcaccgacatcagcaagtcc
atgttcctcactgttaagatcccggccatgatcacctcccaccccaacaccaccatcgcc
atcaagggccacgccaaggagctcaactgcacggcgcggggagagcggcccatcatcatc
cgctgggagaagggggacacggtcatcgaccccgaccgcgtcatgcggtatgccatcgcc
accaaggacaacggcgacgaagtggtctccacgctgaagctcaagcctgctgaccgtggg
gactctgtgttcttcagctgccatgccatcaactcgtacggggaggaccggggcttgatc
caactcacggtgcaagaaccccccgaccccccggagctggagatccgggaggtgaaggcc
cggagcatgaacctgcgctggacccagcgatttgacgggaacagcatcatcacgggcttt
gacattgaatacaagaacaaatcagattcctgggacttcaagcagtccacacgcaacatc
tccccgaccatcaaccaggccaacatcgtggacttgcacccggcatccgtgtacagcatc
cgcatgtattccttcaacaagattggccgcagcgagccgagcaaggagctcaccatcagc
actgaggaggccgctcctgatgggccccccatggatgtaaccttgcagccagtgacctca
cagagcatccaagtgacctggaaggcacccaagaaggagctgcagaacggcgtcatccgg
ggctaccagatcggctacagagagaacagccctggcagcaatgggcagtacagcatcgtg
gagatgaaggccactggagacagcgaggtctacaccctggacaacctcaagaagttcgcc
caatatggggtggtggtccaggccttcaatcgggctggcacggggccctcatccagcgag
atcaatgccaccaccctggaggatgtgcccagccagccccctgagaacgtccgagccctg
tccataacttccgacgtggccgtcatctcctggtcagaacctccacgcagcaccctcaac
ggcgtcctcaaaggctatcgggtcatattctggtcactctacgttgatggggagtggggc
gagatgcagaacatcaccaccacgcgggagagggtggagctgcgaggcatggagaagttc
accaactacagcgtgcaggtgctggcctacacccaggccggggacggcgtgcgcagcagt
gtgctctacatccagaccaaggaggacgttccaggtccccccgctggcatcaaagctgtc
ccttcatccgctagcagtgtggttgtgtcatggctccccccaaccaagcccaacggggtg
atccgcaagtacaccatcttctgcttcagccccgggtctggccagccggctcccagcgag
tatgagacgagtccggagcagctcttctaccggatcgcccacctaaaccgaggacagcaa
tacctgctgtgggtggctgccgtcacctctgccggccggggcaacggcagcgagaaggtg
accatcgagcctgctggcaaggccccagcaaagatcatatcctttgggggcactgtgacg
acaccctggatgagagatgtccggctgccttgcaattcagtgggagacccagcccctgct
gtgaagtggaccaaggacagcgaagactcggccatccccgtgtccatggacgggcactgg
ctcatccacaccaatggcaccttgctgctgcgtgcagtgaaggctgaggactcgggctac
tacacctgcacagccaccaacactgggggcttcgacaccatcatcgtcaaccttctggtg
caagttcccccggaccaaccccgcctaactgtctccaaaacctccgcttcgtccatcacc
ctgacctggattccaggtgacaatgggggcagctccatccgaggcttcgtgctgcagtac
tcggtggacaacagcgaggagtggaaggatgtgttcgtcagctcgagcgagcggtccttc
aggctggacagcctcaagtgtggcacctggtacaaggtgaagctggcggccaagaacagc
gtgggctccgggcgcatcagtgagatcatcgaggccaagacccatgggcgggagccctcc
ttcagcaaagaccagcacctcttcacccacatcaactccacacatgctcggcttaacctg
cagggctggagcaacgggggctgccctatcacagccatcgtgctggagtaccggcccaag
ggcacctgggcctggcagggcctgcgcgccaacaggtccggggaggtgtttctgaccgag
ctgcgagaggccacgtggtacgagctgcgcatgagggcttgcaacagcgctggctgcggc
aacgagaccgcccagttcgccaccctggactacgacggcagcaccatcccgcccatcaag
tctgcacaaggcgagggggacgatgtgaagaagctgttcaccattggctgcccggtcatc
ctggccaccctgggggtggcactgctcttcatcgttcgcaaaaagaggaaagagaagcgg
ctgaagcgactccgagatgcaaagagtttggcagaaatgttaataagcaagaacaaccga
agctttgacacccccgtgaaggggccaccccagggcccacggctacacattgacatcccc
agggtccagctactcatcgaggacaaggagggcatcaagcagctgggagatgacaaggcc
accatccctgtgaccgatgctgagttcagccaagctgtcaaccctcagagtttctgcacc
ggtgtctccttgcaccacccagccctcatccagagcacaggacccctcatcgacatgtct
gacatccggccaggcaccaatccagtgtccaggaagaatgtaaagtcagcccacagcacc
cggaaccggtactcaagccagtggactctgaccaagtgccaggcctccacacccgcccgc
accctcacctccgactggcgcactgtgggctcccagcatggtgtcactgtcaccgagagc
gacagctacagtgccagcctctcccaggacacagacaaaggacggaacagcatggtgtcc
actgagagcgcctcctctacctacgaggagctggcccgggcctacgagcatgccaagctg
gaggagcaactgcagcacgccaagtttgagatcaccgagtgcttcatctccgacagctcc
tctgaccagatgaccacaggcaccaacgagaacgctgacagcatgacatccatgagcaca
ccctcagagcctggcatctgccgcttcaccgcctccccacccaagccccaggatgccgac
cggggcaaaaatgtggctgtgcccatccctcaccgggccaacaagagtgactactgtaac
ctgcccctctacgccaagtcggaggccttcttccgaaaggcagacgggcgggagccctgc
cccgtggtcccgccccgcgaggcctccatcaggaacctggctcgaacctaccagccccag
gctcgccacctgaccctggaccctgccagcaagcccttgggcctcccgcacccgggagcc
gccgccacagccaccttacctcagaggactctggccatgccagctcccccagctggcacg
gcgcccccggcacccggtcccacccctgccgagcccccggctgcccccagcgccgcccct
ccggcccccagcactgagcctccgcgggccgggggcccacacaccaaaatggggggctcc
agggactcacttctcgagatgagcacatcaggggtagggaggtctcagaagcagggagcc
ggggcctactccaaatcctacaccctggtgtag
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