KEGG   Phocoena sinus (vaquita): 116758221
Entry
116758221         CDS       T07759                                 
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm4
  KO
K12623  U6 snRNA-associated Sm-like protein LSm4
Organism
psiu  Phocoena sinus (vaquita)
Pathway
psiu03018  RNA degradation
psiu03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:psiu00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    116758221
  09123 Folding, sorting and degradation
   03018 RNA degradation
    116758221
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:psiu03019]
    116758221
   03041 Spliceosome [BR:psiu03041]
    116758221
Messenger RNA biogenesis [BR:psiu03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     116758221
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     116758221
Spliceosome [BR:psiu03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    116758221
SSDB
Motif
Pfam: LSM
Other DBs
NCBI-GeneID: 116758221
NCBI-ProteinID: XP_032496914
Ensembl: ENSPSNG00000005672
LinkDB
Position
8:56522837..56523241
AA seq 130 aa
MLHLWLLKTAQNHPLLVELKNGEAYNGHLVSCDNWMNTNLREVICKSRDRDNFWLMPECY
IRSSTIKYLRIPNEIIDTVKEEVAAKGRGRGGLQQKRQKGHGTGGAGRGGIPRTSRDQPE
RRPGREAGKQ
NT seq 393 nt   +upstreamnt  +downstreamnt
atgcttcacttgtggctgctgaaaacggctcagaatcacccactgttggtcgagctcaaa
aacggggaggcatacaatgggcatctagtgagctgcgacaactggatgaacaccaacttg
cgtgaggtgatctgcaagtccagggacagagacaatttctggctgatgcccgagtgctac
atccgcagcagcaccatcaagtacctgcgcatccccaatgagatcatcgacacagtcaag
gaggaggtggcggccaagggccgtggccgtggtggcctgcagcagaagcgacagaagggc
catggcacggggggtgctgggcgaggagggatcccaaggaccagcagagatcagccagaa
aggaggccgggcagagaggcgggcaaacagtga

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