Phocoena sinus (vaquita): 116758322
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Entry
116758322 CDS
T07759
Name
(RefSeq) LOW QUALITY PROTEIN: short transient receptor potential channel 2-like
KO
K04965
transient receptor potential cation channel subfamily C member 2
Organism
psiu
Phocoena sinus (vaquita)
Brite
KEGG Orthology (KO) [BR:
psiu00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
psiu04040
]
116758322
Ion channels [BR:
psiu04040
]
Voltage-gated cation channels
Transient receptor potential channel (TRP)
116758322
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Gene cluster
GFIT
Motif
Pfam:
Ion_trans
TRP_2
PKD_channel
Ank_2
Motif
Other DBs
NCBI-GeneID:
116758322
NCBI-ProteinID:
XP_032497040
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Position
8:60260187..60280536
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AA seq
933 aa
AA seq
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MEADPEVGVIFRKQRLLEAPERIHGLREAEEWRFGSEGGGQRTELAGEWVCGPGSEAEPQ
PKWTEIVNRKLKFPPPLLGAIXDLVXQLLELQVETTDGRPGGPLQNVEEAEDHSWREALN
LAIRLGHEAISDVLLASVKFDFRQIHEALLVAVDTNQPAVVRRLLAWLEWEKGRKVDTRP
FSLAFFDSSVDGPRFAPGVTSLTLACQKDLYEIAQLLMDQGHSIARPHPVSCACLECSNT
CCCDLLQFSLSRINTCHGIASCAHLSLASEDAMLAAFQLSCELRRLAHKEPEFKHEYIAL
ESLSQDYGFELLGMCQNQSKVTAVLDALGEDSKTEPEAEGLDQAFEESIPNLARLRLAIT
YNQKWFVAPPICQQVLSSIWHGSLAGWRGSTSIWKLFVAFLIVLTMPFLCLGHWLVPKSR
VARLMKIPVLKFLLHSASYLWFRIFLLGESLVMETQLGTFRGRSHSVXETSLHMVWVAGF
LWFECKEVWIEGLCSYLLDWWNILDTVVLSPYLAAFVLLAGLAYRRCRDAPDGAACRYFT
SAERSEWHTEDHEFLAEVFFXFTRLAYVLPAHESLGTLQISIGRMIDDMIRFMFILTIIL
TAFLCSLNNVYVPYQETEWLGNFNETFQFLFWTMFGTEEHSVVDMPQFLVPELVGRALYG
IFTIVLVIALLNMLIAMITSSVQETEMHELRDAADVEWKFACSKLYLSYFREGLTLPVPF
SILPSPKATFYLLRRIFLFICCXCSCCKTKKPDSPPIPTFANPGAGAGPGEEERGSYWLH
VIKALVQRYIETARREFEETRRKNLGNRLTELTKTVPRLQSEVAGVQRTLVEGRLRRPPD
GASILCRSITRVCNSFQNLGPPIPENPALTVPGIVGTQVSSETGLQDAGRARTPAPGESG
PSSPAHVLGHREQESEGAGDVPQEEDLGTKEGS
NT seq
2802 nt
NT seq
+upstream
nt +downstream
nt
atggaagctgacccggaagtgggagtcattttccggaaacagcggcttcttgaggcccca
gaacgaattcacggacttcgggaggcggaagagtggcgcttcgggtcagaaggcggaggt
cagagaacagaattggcaggagaatgggtttgtggcccaggatctgaggcagagcctcag
cctaagtggaccgagatcgtgaacagaaagctgaagttcccacctccgctgctgggtgcc
attnnggacctggtgtagcagctgctggagttgcaggttgagaccacagacggcaggcca
ggcgggcccctgcagaatgtggaggaggctgaggaccactcctggagggaggcgctcaat
ctggccatccgcctgggccacgaggccatcagtgatgtgctgttggccagtgtcaagttc
gacttccggcagatccacgaggccctgctggtggctgtggacacaaaccagccggcagtg
gtgcgtcgcctgctggcctggctggaatgggagaagggccgcaaggtggacaccaggcct
ttctcactggccttctttgactcatcagtcgatggcccccgctttgcccctggtgtcacc
tccctcaccctggcctgccagaaggacctgtatgagatcgcccagctgctcatggaccag
ggccacagcatcgcccggccccaccctgtctcctgtgcctgcctcgagtgcagcaacaca
tgctgctgtgatctgctccagttctccctgtcccgcatcaacacctgtcatggcattgcc
agctgtgcccacctctcactggccagtgaggacgccatgctggctgccttccagctcagc
tgtgagctcaggcgccttgcccacaaggagcctgagtttaagcatgagtacattgccctg
gagtcgctgagccaggactacggctttgaactgctgggcatgtgccagaaccagagcaag
gtcactgcggtgctcgatgccttgggcgaggacagcaagactgagcccgaggccgagggt
ctggaccaggcctttgaggaaagcatccccaacctggcgaggctgcgactggccatcacc
tacaaccagaagtggtttgtagcaccccccatctgccagcaggtcctgtcctccatctgg
catgggagcctggctggctggcgtgggagcaccagtatctggaagctctttgtcgccttc
ctcatcgtcctcaccatgcccttcctctgccttggccactggctggtgcccaagtcccgg
gtggcccgcctgatgaagatcccagtgctgaagttcctgctgcactcggcctcctatctg
tggttccgcatcttcctgctgggagagtccctggtcatggagacacagctgggtaccttc
cgaggccgcagccacagtgtctaggagacttcactacacatggtttgggttgcaggcttc
ctgtggtttgagtgtaaggaagtgtggatcgagggcctgtgcagttacctcctggactgg
tggaacatcctggacacggtcgtcttgtccccgtacctggcggccttcgtgcttctggcc
gggctggcctacaggcgctgccgggatgccccggacggggctgcctgccgctacttcacc
tcggctgagcggagtgagtggcacacggaagaccacgagttcctggctgaggtgttcttt
ngcttcacccgcctggcctacgtcctgccggcccacgagtcgctgggcaccctgcagatt
tccattggcaggatgatcgacgacatgatccggttcatgttcattctcacgattatcctg
accgccttcctctgcagcctcaacaacgtctacgtgccttaccaggagacagagtggctg
ggcaatttcaacgagaccttccagtttctgttctggacgatgtttggcacggaggagcac
agtgtggttgacatgccccagtttctggtgccggaactggtgggccgggccctctacggt
atctttaccatcgtcctggtcattgcgctgctcaacatgctcattgccatgatcaccagc
tccgttcaggagactgagatgcatgaactgagggacgctgctgacgtggagtggaagttt
gcttgctccaagctctacctgtcctacttccgagagggcctgacactgcccgtgcccttc
agcatcctgccctcccccaaggctaccttctaccttctcaggagaattttcctcttcatt
tgctgttgatgctcctgctgcaaaaccaagaagccagactctcccccaatccccaccttt
gccaatcctggggcaggggcagggcctggggaggaagagcgtggatcctactggcttcat
gtcatcaaggctctggtacagcgctacatagagactgcgcggcgggagtttgaggagacc
cgtcggaaaaacctgggcaacagactgacagagctgaccaagacagtacctcgactgcaa
agcgaggtagccggtgtgcagcggactctggtggagggaaggctgcgccggccaccagac
ggtgccagcatcctctgtcgctccatcacccgagtgtgcaacagcttccagaacctgggc
cctcccatccctgagaacccagcgctgacagtgccagggattgtggggacccaggtgtct
tcagaaactgggcttcaggacgcaggcagggccaggactccagcacctggagagtctggc
ccctcctccccagctcacgtgctagggcacagggagcaagaatcagagggggctggggac
gtgccccaggaggaagacctgggaaccaaggaggggtcctga
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