KEGG   Phocoena sinus (vaquita): 116758728
Entry
116758728         CDS       T07759                                 
Symbol
VPS11
Name
(RefSeq) vacuolar protein sorting-associated protein 11 homolog
  KO
K20179  vacuolar protein sorting-associated protein 11
Organism
psiu  Phocoena sinus (vaquita)
Pathway
psiu04140  Autophagy - animal
psiu04148  Efferocytosis
psiu05132  Salmonella infection
Brite
KEGG Orthology (KO) [BR:psiu00001]
 09140 Cellular Processes
  09141 Transport and catabolism
   04140 Autophagy - animal
    116758728 (VPS11)
   04148 Efferocytosis
    116758728 (VPS11)
 09160 Human Diseases
  09171 Infectious disease: bacterial
   05132 Salmonella infection
    116758728 (VPS11)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:psiu04131]
    116758728 (VPS11)
Membrane trafficking [BR:psiu04131]
 Endosome - Lysosome transport
  Tethering complex
   CORVET complex
    116758728 (VPS11)
   Hops complex
    116758728 (VPS11)
SSDB
Motif
Pfam: PEP5_VPS11_N TPR_PEP5_VPS11 VPS11_N VPS11_C Clathrin zf-C3HC4_2 zf-RING_2 zf-C3HC4 TPR_GEMI5 TPR_Vps41 zf-rbx1 Beta-prop_WDR3_1st zf-C3H2C3 zf-RING_UBOX zf-RING_5 Beta-prop_WDR36-Utp21_1st DUF1993 zf-RING_11 zf-ANAPC11 zf-C3HC4_3 zf_RING_Vps8_fungal DUF5847 zf-RING-like DLP_helical
Other DBs
NCBI-GeneID: 116758728
NCBI-ProteinID: XP_032497736
Ensembl: ENSPSNG00000002305
UniProt: A0A8C9BA69
LinkDB
Position
8:complement(13612099..13621150)
AA seq 941 aa
MAAYLQWRRFVFFDKELVKEPLGNDGAAPGAAPASGPSASKFLCLPPGITVCDSGRGSLV
FGDMEGQIWFLPRSLQLTGFQAYKLRVTHLYQLKQHNILASVGEDEEGINPLVKIWNLEK
RDGGNPLCTRIFPAIPGAEPTVVSCLTVHENLNFMAIGFTDGSVTLNKGDITRDRHSKTQ
ILHKGDYPVTGLAFRQAGKTTHLFVVTTENVQSYIVSGKDYPRVELDTHGCGLRCSALSD
PSQDLQFIVAGDECVYLYQPDERGPCFAFEGHKLIAHWFRGYLVIVSRDRKVSPKSEFTS
RDSQSSDKQILNIYDLCNKFIAYSTVFEDVVDVLAEWGSLYVLTRDGRVHALQEKDTQTK
LEMLFKKNLFEMAINLAKSQHLDSDGLAQIFMQYGDHLYSKGNHDGAVQQYIRTIGKLEP
SYVIRKFLDAQRIHNLTAYLQTLHRQSLANADHTTLLLNCYTKLKDSSKLEEFIKTKSES
EVHFDVETAIKVLRQAGYYSHALYLAENHAHHEWYLKIQLEDIKNYQEALRYIGKLPFEQ
AESNMKRYGKILMHHIPEQTTELLKGLCTDYRPSLEGRGDREAPGCRANSEEFIPIFANN
PRELKAFLEHMSEVQPDSPQGIYDTLLELRLQNWAHEQEPQVKEKLHAEAISLLKSGRFC
DVFDKALVLCQMHDFQDGVLYLYEQGKLFQQIVQYHMQHEQYRQVLAVCERHGAQEPSLW
EQALSYFARKEEDCKQYVAAVLKHIEGKNLMPPLLVVQTLAHNSTATLSVIRDYLVQKLQ
KQSQQIAQDELRVRRYREETTRIRQEIQELKASPKIFQKTKCSICNSALELPSVHFLCGH
SFHQHCFESYSESDADCPTCLPENRKVMDMIRAQEQKRDLHDQFQHQLKCSNDSFSVIAD
YFGRGVFNKLTLLTDPPTARLTASLEAGLQRDLLIHARRGT
NT seq 2826 nt   +upstreamnt  +downstreamnt
atggcggcctacctgcagtggcggcgtttcgttttcttcgataaggagctggtgaaggag
ccactgggcaatgatggggctgctcccggggctgcgcctgcctctggaccctctgcttcc
aagttcctttgcctccctcctggcatcactgtctgcgactcaggccgagggagcctagtc
tttggagacatggaaggccagatatggttcttgccccgctccctacagcttaccgggttc
caggcttacaaactacgggtgacacacctgtaccagttgaagcagcacaacattctggca
tctgttggtgaggatgaagaggggatcaaccccctggtaaagatctggaacctggagaag
agagatggtggcaatccactctgcactcgaatcttccctgccatcccaggggcagagccg
actgttgtatcttgtttgactgtccatgaaaatctcaactttatggccatcggtttcaca
gatggcagtgttacactgaacaaaggggacatcactcgggaccggcatagcaagacccag
attttgcacaagggcgactatcctgttaccggactggcctttcgccaagcaggaaagacc
actcacttgtttgttgtgacaactgagaatgttcagtcctacatagtttctggaaaggac
taccctcgtgtggaattggacacccacggttgtggcctgcgctgctcagccctaagcgac
ccttctcaggacctgcagttcatagtggcaggggatgaatgtgtctacttataccagcct
gatgaacgggggccctgcttcgcctttgagggccataaactcattgctcactggtttaga
ggctaccttgtcattgtctcccgtgaccggaaggtttctcccaagtcagagtttaccagc
agggactcccagagctccgacaagcagattctcaacatctatgacctgtgcaacaaattc
atagcctatagcaccgtctttgaggatgtagtggatgtgcttgctgagtggggctccctg
tacgtgctgacgcgggatgggcgggtccacgcactgcaggagaaggacacacagaccaaa
ctggagatgctgtttaagaagaacctattcgagatggcgattaatctggccaagagccag
catctggacagtgacgggttggcacagatcttcatgcagtatggggaccatctctacagc
aagggcaaccatgatggggctgtccagcagtatatccgaaccattggaaagttggagcca
tcgtatgtgatccgcaagttcctggatgcccagcgcatccacaacctgacggcttacctg
cagaccctgcaccggcagtccctggccaatgccgaccacaccaccctactgctcaactgc
tacacaaagctcaaggacagctcgaagctggaggagttcatcaagacaaagagtgagagt
gaagtccactttgatgtggagacagccatcaaggtcctccggcaggctggctactactcc
catgccctctatttggctgagaaccatgcacatcacgagtggtacttgaagatccagcta
gaggacatcaagaattatcaggaagcccttcgatacattggcaagcttccttttgagcag
gcagagagcaacatgaaacgctacggcaagatcctcatgcaccacataccagagcagacg
accgagttgctgaagggactttgtaccgactatcggcccagccttgaaggccgaggcgat
agggaggctccaggctgcagggccaactcagaggagttcatccccatctttgccaacaac
ccacgggagctgaaagctttcctagagcacatgagtgaggtgcagcctgactccccgcag
ggcatctatgacacgctcctggagctgcgactccagaactgggctcacgagcaggagccg
caggtcaaagagaagcttcacgcagaggccatctccctactgaagagtggtcgcttctgt
gatgtctttgacaaagccctggtcctctgccagatgcacgacttccaggatggggtcctt
tacctctatgagcaggggaaactgttccagcagatcgtgcagtaccacatgcagcacgag
cagtaccggcaggtgctcgccgtgtgtgagcgccacggggcgcaggagccctccctgtgg
gaacaggcgctcagctacttcgcccgcaaggaggaggactgcaagcagtacgtggcggct
gtgcttaagcacatcgagggcaagaacctcatgccgcctctcctagtggtgcagaccctg
gcccacaactccacggccaccctgtctgtcatccgggactacctggtccaaaaactgcag
aagcagagccagcagatcgcgcaggacgagctccgggtgcggcgctaccgagaggagacc
acccgtatccgccaggagatccaggagctgaaagcgagtccgaagattttccagaagacc
aagtgcagcatctgtaacagtgccttggagttgccctcagtccactttctctgcggccac
tccttccaccagcactgctttgagagttactcagaaagtgatgccgactgccccacctgc
ctccctgaaaaccgcaaggtcatggatatgattcgggcccaggaacagaagcgagatctc
catgaccagttccagcaccagctcaagtgctccaacgacagcttctctgtgattgctgac
tactttggccgaggtgttttcaacaaattgactctgctgaccgacccgcccacagcccga
ctgactgcgagcctggaggctgggctgcagagggacttgctcatacacgccaggaggggc
acttaa

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