Phocoena sinus (vaquita): 116758758
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Entry
116758758 CDS
T07759
Symbol
NXF1
Name
(RefSeq) nuclear RNA export factor 1
KO
K14284
nuclear RNA export factor
Organism
psiu
Phocoena sinus (vaquita)
Pathway
psiu03008
Ribosome biogenesis in eukaryotes
psiu03013
Nucleocytoplasmic transport
psiu03015
mRNA surveillance pathway
psiu05014
Amyotrophic lateral sclerosis
psiu05164
Influenza A
psiu05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
psiu00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
116758758 (NXF1)
03015 mRNA surveillance pathway
116758758 (NXF1)
03008 Ribosome biogenesis in eukaryotes
116758758 (NXF1)
09160 Human Diseases
09172 Infectious disease: viral
05164 Influenza A
116758758 (NXF1)
05168 Herpes simplex virus 1 infection
116758758 (NXF1)
09164 Neurodegenerative disease
05014 Amyotrophic lateral sclerosis
116758758 (NXF1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psiu03019
]
116758758 (NXF1)
03009 Ribosome biogenesis [BR:
psiu03009
]
116758758 (NXF1)
Messenger RNA biogenesis [BR:
psiu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
116758758 (NXF1)
mRNA cycle factors
Stress granule specific factors
116758758 (NXF1)
Ribosome biogenesis [BR:
psiu03009
]
Eukaryotic type
Pre-60S particles
Export and cytoplasmic maturation factors
116758758 (NXF1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LRR_NXF1-5
NXF_NTF2
Tap-RNA_bind
TAP_C
NTF2
LRR_4
UBA_8
LRR_8
LRR_9
LRR_Zer-1
Motif
Other DBs
NCBI-GeneID:
116758758
NCBI-ProteinID:
XP_032497798
Ensembl:
ENSPSNG00000019489
UniProt:
A0A8C9CT36
LinkDB
All DBs
Position
8:complement(101421001..101432956)
Genome browser
AA seq
620 aa
AA seq
DB search
MADEGKSYNEHDDRVGFPQRRKKGRGPFRWKCGEGNRRSGRGGFVVRSSRLEENDRDVAM
SDAQDVSRVRYNPYAARPNRRGDNWHERSRIHVTVPLRRDRAPPERAGAGPSRDGASRNW
FKITIPYGRKYDKSWLLSMIQSKCSIPFTPIEFHYENTRALFLVEDASTASALKAVNYKI
LDRENRRISIIINSSLPPHTVQNELKPEQAEQLKLVMSKRYDGSQQALDLKGLRSDPDLV
AQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNKLYRLDDLSSIVQKAPNLKILDLS
GNELKSERELDKIKGLKLEELWLDRNTLCDTFRDQSTYISAVRERFPKLLRLDGHELPPP
IAFDIEAPTVLPPCKGSYFGTETLKNLVLHFLQQYYAIYDSGDRQQLLDAYHDGACCSLS
IPFTPQNPARSNLAEYFKDSRNVKKLKDPTLRFRLLKHTRLNVVAFLNELPKTQHDVSSF
VVDISAQTSTLLCFSVNGVFKEVDGKSRDSLRAFTRTFIAVPASNSGLCIVNDELFVRNA
SPDEIQRAFAMPAPTPSSSPVPTLSPEQQEMIQAFSTQSGMNLEWSQKCLQDNHWDYTRS
AQAFTHLKAKGEIPEVAFIK
NT seq
1863 nt
NT seq
+upstream
nt +downstream
nt
atggcggacgaggggaagtcgtacaacgagcatgatgatcgagttggtttccctcaaaga
agaaagaaaggccggggccccttccggtggaagtgtggtgaggggaaccggaggtctgga
agaggaggtttcgttgttcggtcttcccgccttgaggagaatgacagagatgtggcaatg
agcgatgcccaggatgtttcccgagtacgatacaacccctatgctgcacgacccaaccgt
cggggtgataattggcacgagcggtcccgaattcacgttacggtgcctctgcggagagat
agagctcctcccgagagggccggggctggccccagccgggacggggcctcgaggaactgg
tttaagattacaattccttatggcaggaagtatgacaagtcatggctcctgagcatgatc
cagagcaagtgcagcatccctttcactcccattgagtttcactatgaaaacacacgggcc
ctgtttttggttgaggatgccagtactgcctctgcattgaaggctgtcaactataagatt
ttagatcgggagaaccgcaggatatctatcatcatcaactcctctcttccaccccacact
gtgcagaacgaactgaagccagagcaagcagagcagctaaagctggtcatgagcaaacgg
tacgatggctcccagcaagcacttgacctcaagggcctccgctcagacccagatttggtg
gcccagaacattgatgttgtcctgaatcgtagaagctgtatggcagccaccctgcgaatc
attgaagagaacatccctgagctgttgtccttaaacttgagcaataacaagctgtacagg
ctggatgacttgtccagcattgtgcagaaagcacccaatctaaagatcctcgatctttct
ggaaatgagctaaagtctgagcgggagttggacaagataaaagggctgaaactagaagag
ctgtggctcgacagaaacaccctgtgtgatacctttcgagaccagtccacctacatcagc
gccgttcgagagcgatttcccaaattattacgcctggacggccatgagttacccccaccg
attgcctttgacattgaagcccccacagtgttacctccctgcaagggaagctactttgga
acagagaccctcaagaatctggtgctgcacttcttgcagcagtactatgcgatatatgac
tctggggaccggcagcagctcctggatgcctaccacgatggggcctgctgctctctgagt
attcctttcaccccccagaaccctgcccgaagcaacttagctgagtacttcaaggatagt
aggaatgtgaagaagcttaaagaccctaccctgcggttccggctgctaaagcacacacgt
ctcaatgttgtggccttcctcaatgagttgcccaaaactcagcatgacgtcagttccttc
gtggtagacataagcgcccagacaagcacgttgctgtgtttttctgtcaatggggtcttc
aaagaagtggatggaaaatctcgggactctttgcgagcctttacccggacattcatcgct
gttcctgccagcaattcagggttgtgcatcgtaaacgatgagctgtttgtgcggaatgcc
agtcctgatgagatccaaagagcctttgccatgcctgcacccacaccttcttccagccca
gtgcccaccctctccccagagcagcaggaaatgattcaggcattctctacccagtctggc
atgaaccttgagtggtcccagaagtgccttcaggacaaccactgggactacaccagatct
gcccaggcctttactcatctcaaggccaagggcgagatcccagaagtggcattcataaag
taa
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integrated database retrieval system
