Phocoena sinus (vaquita): 116758814
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Entry
116758814 CDS
T07759
Symbol
SYVN1
Name
(RefSeq) E3 ubiquitin-protein ligase synoviolin isoform X1
KO
K10601
E3 ubiquitin-protein ligase synoviolin [EC:
2.3.2.27
]
Organism
psiu
Phocoena sinus (vaquita)
Pathway
psiu04120
Ubiquitin mediated proteolysis
psiu04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
psiu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
116758814 (SYVN1)
04120 Ubiquitin mediated proteolysis
116758814 (SYVN1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
psiu04121
]
116758814 (SYVN1)
Enzymes [BR:
psiu01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
116758814 (SYVN1)
Ubiquitin system [BR:
psiu04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
116758814 (SYVN1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_2
zf-C3HC4
zf-rbx1
zf-C3HC4_2
zf-RING_UBOX
zf-C3HC4_3
zf-RING_16
zf-RING_11
zf-RING_5
zf-RING-like
zf-ANAPC11
zf-HC5HC2H
zf-C3H2C3
zf-Nse
Endonuclease_7
Prok-RING_4
Motif
Other DBs
NCBI-GeneID:
116758814
NCBI-ProteinID:
XP_032497931
Ensembl:
ENSPSNG00000008474
LinkDB
All DBs
Position
8:complement(103164870..103172023)
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AA seq
610 aa
AA seq
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MFRTAVMMAASLALTGAVVAHAYYLKHQFYPTVVYLTKSSPSMAVLYIQAFVLVFLLGKV
MGKVFFGQLRAAEMEHLLERSWYAVTETCLAFTVFRDDFSPRFVALFTLLLFLKCFHWLA
EDRVDFMERSPNISWLFHCRIVSLMFLLGILDFLFVSHAYHSILTRGASVQLVFGFEYAI
LMTMVLTIFIKYVLHSVDLQSENPWDNKAVYMLYTELFTGFIKVLLYMAFMTIMIKVHTF
PLFAIRPMYLAMRQFKKAVTDAIMSRRAIRNMNTLYPDATPEELQAMDNVCIICREEMVT
GAKRLPCNHIFHTSCLRSWFQRQQTCPTCRMDVLRASLPTQSPPPPEPADQGPPPAPHPP
PLLPQPPNFAQGLLPPFPPGMFPLWPPMGPFPPVPPPPSSGDAVAPPSTSAALSRPSGAA
TTTAGSAASAPAPGSASTPDAGPAPGFPFPPPWMGMPLPPPFAFPPMPVPPAGFAGLTPE
ELRALEGHERQHLEARLQSLRNIHTLLDAAMLQINQYLTVLASLGPPRPATSANPTEETA
PTAVAAAFSTSTPSSEATTPSLGASPPAPEPEKPSAPESAGTEELPEDGEPDAAELRRRR
LQKLESPVAH
NT seq
1833 nt
NT seq
+upstream
nt +downstream
nt
atgttccgcaccgccgtgatgatggcggccagcctggcgctgaccggggccgtggtggct
cacgcctactacctcaagcaccagttctaccccaccgtggtgtacttgaccaagtcaagc
cccagcatggcagtcctgtacatccaggccttcgtccttgtcttcctcttgggcaaggtg
atgggcaaggtgttcttcggacagctgagggcggcagagatggagcatcttctggaacgt
tcctggtacgctgtcactgagacttgtctggccttcactgtttttcgggatgactttagc
ccccgctttgtggcactcttcactctccttctcttcctcaagtgctttcactggctggct
gaggaccgtgtggactttatggaacgcagccccaatatctcctggctctttcactgccgc
attgtctcccttatgttcctcctgggtatcctggacttcctcttcgtcagccatgcctat
cacagcatcctgacccgtggggcctctgtgcagctggtgtttggctttgagtatgccatc
ctgatgactatggtgctcaccatcttcatcaagtacgtgctgcactctgtggacctccag
agcgagaatccctgggacaataaggccgtgtacatgctctacacggagctgtttacaggc
tttatcaaggttctgctgtacatggctttcatgaccatcatgatcaaggtgcacactttc
cctctctttgccatccggcctatgtacctggccatgaggcagttcaagaaagctgtgaca
gatgccatcatgtctcgccgagctatccgcaacatgaacacactgtatccagacgccacc
ccagaggaactccaggcgatggacaacgtctgcatcatctgccgagaagagatggtgact
ggtgccaagagactgccctgcaaccacattttccacaccagctgcctgcgctcctggttc
cagcggcagcagacctgccccacctgccgtatggatgtccttcgggcgtcgctgccgacc
cagtcaccaccgccccctgagcctgcggatcaggggccaccacctgccccccaccccccg
ccactcctgccccagccccccaacttcgcccagggcctcctgcctcccttccctccaggc
atgttcccgctgtggccccccatgggcccctttcctcctgtcccacctccccccagctct
ggagacgctgtggcccctccgtccaccagtgcagccctttctcggcccagtggagcagcc
acaaccacagctggttctgctgcctctgccccagcacctggctcggcctccacccctgac
gctggccctgccccaggcttccccttccctcccccgtggatgggcatgccactgcctcca
ccctttgccttccccccgatgcctgtgcctcctgccggctttgctgggctgaccccagag
gagctgcgggctctggaaggccacgagcggcagcacctggaggcccggctacagagcctg
cgcaacatccacacgctgctggatgccgccatgctgcagatcaaccagtacctcactgtg
ctcgcctccctcgggcccccccggcctgccacctcagccaaccccactgaggagactgcc
cctacagctgtcgctgctgccttctctaccagcacccccagctctgaggccaccacccca
tccctgggagcctccccgccagcccctgaacctgaaaagccttcagctcctgagtcagcg
ggcaccgaggagctgcctgaggatggggagcctgacgcagcagagctccgccgccgtcgc
ctgcagaagttggagtcccctgttgcccactga
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