KEGG   Phocoena sinus (vaquita): 116759005
Entry
116759005         CDS       T07759                                 
Symbol
LSM5
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm5
  KO
K12624  U6 snRNA-associated Sm-like protein LSm5
Organism
psiu  Phocoena sinus (vaquita)
Pathway
psiu03018  RNA degradation
psiu03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:psiu00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    116759005 (LSM5)
  09123 Folding, sorting and degradation
   03018 RNA degradation
    116759005 (LSM5)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:psiu03019]
    116759005 (LSM5)
   03041 Spliceosome [BR:psiu03041]
    116759005 (LSM5)
Messenger RNA biogenesis [BR:psiu03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     116759005 (LSM5)
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     116759005 (LSM5)
Spliceosome [BR:psiu03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    116759005 (LSM5)
SSDB
Motif
Pfam: LSM SM-ATX LSM12_LSM LSM14
Other DBs
NCBI-GeneID: 116759005
NCBI-ProteinID: XP_032498069
Ensembl: ENSPSNG00000008827
UniProt: A0A8C9BLM5
LinkDB
Position
9:44789258..44792982
AA seq 91 aa
MAANATTNPSQLLPLELVDKCIGSRIHIVMKSDKEIVGTLLGFDDFVNMVLEDVTEFEIT
PEGRRITKLDQILLNGNNITMLVPGGEGPEV
NT seq 276 nt   +upstreamnt  +downstreamnt
atggcggctaacgctactaccaacccgtctcagcttctacctctagagcttgtggacaag
tgtataggatcgaggattcacattgtgatgaagagtgataaggagattgttggcacactt
ctgggatttgatgactttgtcaatatggtactggaagatgtcactgagtttgaaatcaca
ccagaaggaagaagaattactaaattagatcaaattttgctaaatggaaataacataaca
atgctggttcctggaggagaaggacctgaagtatga

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