Phocoena sinus (vaquita): 116759195
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Entry
116759195 CDS
T07759
Symbol
CNOT4
Name
(RefSeq) CCR4-NOT transcription complex subunit 4 isoform X1
KO
K10643
CCR4-NOT transcription complex subunit 4 [EC:
2.3.2.27
]
Organism
psiu
Phocoena sinus (vaquita)
Pathway
psiu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psiu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
116759195 (CNOT4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
psiu03000
]
116759195 (CNOT4)
03019 Messenger RNA biogenesis [BR:
psiu03019
]
116759195 (CNOT4)
04121 Ubiquitin system [BR:
psiu04121
]
116759195 (CNOT4)
Enzymes [BR:
psiu01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
116759195 (CNOT4)
Transcription factors [BR:
psiu03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
116759195 (CNOT4)
Messenger RNA biogenesis [BR:
psiu03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
116759195 (CNOT4)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
116759195 (CNOT4)
Ubiquitin system [BR:
psiu04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
116759195 (CNOT4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_4
RRM_1
zf-C3HC4_3
zf-UDP
zf-C3HC4_2
zf-RING_2
zf-CCCH_2
Rtf2
DZR_2
Nup35_RRM_2
zf-C3HC4
Torus
Motif
Other DBs
NCBI-GeneID:
116759195
NCBI-ProteinID:
XP_032498510
Ensembl:
ENSPSNG00000021094
UniProt:
A0A8C9EAM0
LinkDB
All DBs
Position
9:17696281..17838866
Genome browser
AA seq
714 aa
AA seq
DB search
MSRSPDVKEDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPY
PEDPAVYKPLSQEELQRIKNEKKQKQNERKQKISENRKHLASVRVVQKNLVFVVGLSQRL
ADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVV
VDGRTLKASLGTTKYCSYFLKNMQCPKPDCMYLHELGDEAASFTKEEMQAGKHQEYEQKL
LQELYKLNPNFLQLSTGSVDKNKNKVTPLQRYDTPIDKPSDSLSIGNGDNSQQISNSDTP
SPPPGLSKSNPVIPISSSNHSARSPFEGAVTESQSLFSDNFRHPNPIPSGLPPFPSSPQA
SSDWPTAPEPQSLFTSETIPVSSSTDWQAAFGFGSSKQPEDDLGFDPFDVTRKALADLIE
KELSVQDQPSLSPTSLQNSSSHTTTAKGLGSGFLHPAAPANANSSLNSTFSVLPQRFPQF
QQHRAVYNSFSFPGQAARYPWMAFPRNSIMHLNHTANPTSNSNFLDLNLPPQHNTGLGGI
PIADNSSSVESLNMKEWQDGLRALLPNININFGGLPNSSSPSNASHSAPTSNTATTDSPS
WDSPGSWTDPAIITGIPASSGNSLDSLQDDNPPHWLKSLQALTEMDGPNAAPSQTHHSAP
FSTQIPLHRASWNPYPPPSNPSSFHSPPPGFQTAFRPPSKTPTDLLQSSTLDRH
NT seq
2145 nt
NT seq
+upstream
nt +downstream
nt
atgtctcgcagtcctgatgtgaaggaagaccctgtggaatgtcctctttgcatggagccc
ttggagatagatgatatcaactttttcccttgcacctgtggctaccagatttgccgattt
tgttggcatcgaattcgcactgatgaaaatgggctttgtcctgcatgcagaaagccatat
ccagaagacccagcagtttataaaccactctcccaggaagaactgcaaaggataaagaat
gagaaaaaacagaagcaaaatgagagaaaacagaaaatatcagaaaatcgcaaacatttg
gctagtgtacgtgttgtacaaaaaaacctcgtctttgttgtaggtctgtctcagcgccta
gcagacccagaggttttaaaacgaccagaatattttgggaagtttggtaaaatacataaa
gttgtcatcaataatagcacatcatatgcaggctcacagggtccaagcgccagtgcttac
gtaacctatatccggtcggaagatgctctcagagccatacagtgtgtcaacaatgtggtg
gtagatggcagaacacttaaggcatctctaggtacaacaaaatactgcagttacttctta
aagaatatgcagtgtccaaagcctgactgcatgtacctacatgaattgggggacgaggcg
gccagcttcacaaaagaggaaatgcaggcgggtaaacaccaagaatatgaacagaagcta
cttcaagaattatataaattaaaccccaattttcttcagctgtctacgggttcagttgat
aagaataagaacaaagtgacaccactgcagaggtatgatacccccattgacaaaccttcc
gattctctcagcatagggaatggtgataattcccagcagatatctaacagtgatacacct
tcaccaccacctggtttatcaaaatccaatccagtcatccccatcagttcatccaatcac
agtgcacggtctccttttgaaggggcagtaactgagtcacagtcattattctcagacaat
tttcgccatcccaaccctatcccaagtgggcttcctcctttccccagttccccacaggca
tccagtgactggcctacagcaccagaaccacagagcctcttcacatcagaaacaatccca
gtatcgtcttctacagactggcaagcagcatttggctttggttcttctaaacaaccagag
gatgacttgggttttgatccctttgatgtcactcgaaaagccttagcagacctgattgaa
aaggaactgtcagtccaagaccaaccttccctttcgcccacatctcttcagaactcctct
tcacacactacaaccgccaaaggtctgggctctggattcctgcatcctgctgcacctgca
aatgccaactcgagtctcaatagtaccttttcagtcttgccacagaggttccctcaattt
cagcagcaccgagcggtttataattcattcagttttccaggccaggcagcccgctatcct
tggatggcctttccacgcaatagcatcatgcacttgaaccacacagcaaatcccacctca
aatagtaatttcttggacttgaatctcccgccacagcacaacacaggtctgggagggatc
cctatagcagacaacagcagttctgtagagagtttaaatatgaaggaatggcaggacggg
ctaagggcacttctacccaacattaacatcaactttggtggactgcccaattcttcttcc
ccctccaacgccagccacagtgcaccaacgtccaacactgccaccaccgacagcccgagt
tgggacagccctggcagctggacagacccagccatcatcacaggtattccagcatcttca
ggaaacagtttagactctcttcaagatgacaatcctccacactggctaaaatcccttcag
gccctcacagagatggacggccccaatgctgctccatcacaaacccaccacagcgccccc
ttcagcacacagatccctttgcacagagccagttggaatccctaccctcctccttcaaat
ccttccagctttcactcgccacccccaggctttcagacagccttcagaccccccagcaaa
acccccacagatttgttacagagttcaacactggaccgccattag
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