Phocoena sinus (vaquita): 116759336
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Entry
116759336 CDS
T07759
Symbol
DDX56
Name
(RefSeq) probable ATP-dependent RNA helicase DDX56 isoform X1
KO
K14810
ATP-dependent RNA helicase DDX56/DBP9 [EC:
5.6.2.7
]
Organism
psiu
Phocoena sinus (vaquita)
Brite
KEGG Orthology (KO) [BR:
psiu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
psiu03009
]
116759336 (DDX56)
Enzymes [BR:
psiu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
116759336 (DDX56)
Ribosome biogenesis [BR:
psiu03009
]
Eukaryotic type
Pre-60S particles
Helicases
116759336 (DDX56)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
Helicase_RecD
Motif
Other DBs
NCBI-GeneID:
116759336
NCBI-ProteinID:
XP_032498870
Ensembl:
ENSPSNG00000009245
UniProt:
A0A8C9BWS9
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All DBs
Position
9:complement(97572222..97581291)
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AA seq
546 aa
AA seq
DB search
MEDPETLGFEHMGLDHRLLQAVTDLGWSRPTLIQEKAIPLALEGKDLLARARTGSGKTAA
YAIPMLQQLLRKKATGPAVEQAVRALVLVPTKELARQAQSMIQQLAAYCARDIRVANVSA
AEDSASQRAVLMEKPDVVVGTPSRILNHLQQDNLKLQDSLELLVVDEADLLFSFGFEEEL
KSLLCHLPRIYQAFLMSATFNEDVQALKELVLHNPVTLKLQESQLPGPDQLQQFQVVCET
EEDKFLLLYALLKLSLIRGKSLLFVNTMERSYRLRLFLEQFSIPACVLNGELPLRSRCHI
ISQFNQGFYDCVIATDAEVLGPPVKGKDRGKGPKRNRAADPEAGVARGIDFHHVCAVLNF
DLPPTPEAYIHRAGRTARANNPGIVLTFVLPTEQSHLGKIEELLSGGSGAPVLLPYQFRM
EEIEGFRYRCRDAMRSVTKQAIREARLKEIKEELLHSEKLKTYFEDNPRDLQLLRHDLPL
HPAVVKPHLGHVPDYLVPPALRGLLHPHKKRKKPPSSKKAKKVKTQNPLRSFRHREEKRG
PTAAPS
NT seq
1641 nt
NT seq
+upstream
nt +downstream
nt
atggaggatcccgaaacgctgggctttgaacacatgggcctggaccaccggctcttacag
gccgtcaccgacctgggctggtcgcgacccacgctgatccaggaaaaggccatcccactg
gccctggaggggaaggacctcctggctcgggcccgcacgggttcagggaagaccgccgct
tatgccattccgatgctgcagcagctgctccgcaagaaggcgacaggcccggcggtagag
caggctgtgagagccctcgtccttgtgccgaccaaggaactggcacggcaggctcagtcc
atgattcaacagctggctgcctactgtgctcgagacatccgggtggccaatgtctcagcc
gctgaagactcagcctctcagagagctgtgctgatggagaagcccgatgtagtggtgggg
accccatcccgcatattaaaccacttgcaacaagacaacttgaaactgcaagactccctg
gagctgctggtggtcgatgaggctgatcttcttttctcctttggctttgaggaggaactc
aagagtcttctctgtcacttgccccggatttaccaggcttttctgatgtcggctactttt
aatgaggacgtacaagcactcaaggagctggtactgcataacccggttaccctcaagtta
caggagtcccagctgccagggccagaccagttacagcagtttcaggtggtctgtgagact
gaggaagacaaatttctgttgctgtatgccctgctcaaactgtcattgattcggggaaag
tctctgctctttgtcaacacaatggagcggagttaccggctgcgcctgttcctggagcag
ttcagcatccccgcctgtgtgctcaatggagagctcccgctgcgctccaggtgccacatc
atctcacagttcaaccaaggcttctatgactgcgtcatagcaacagatgctgaagttttg
gggcctccagtcaagggcaaggatcggggcaaaggacccaagcggaacagggccgctgat
ccggaggctggtgtggcccgcggcatagacttccaccacgtgtgtgctgtgctcaacttt
gatctcccccccacccccgaggcctacatacatcgggccggcaggacggcgcgtgccaac
aacccaggcatcgtcttgaccttcgtgctgcccacggagcagtcccatctgggcaagatc
gaggagcttctcagcggagggagcggagcccccgtcctgcttccctaccagttccgcatg
gaggagatcgagggcttccgctaccgctgcagggacgccatgcgctcagtgactaaacaa
gccatccgcgaggcgaggctgaaggagatcaaggaggagcttctgcactccgagaagctc
aagacgtactttgaagacaaccccagggatctccagctgctgcggcacgacctacccttg
caccccgctgtggtgaagccccacctgggccacgtccctgactacctggttcctcctgct
cttcgcggcctcctccaccctcacaagaagcggaagaagcccccttcctctaagaaggcc
aagaaggtgaaaacccagaacccactgcgcagcttcaggcacagagaagagaagcgcgga
cccacagcagcgccctcctaa
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