Phocoena sinus (vaquita): 116759429
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Entry
116759429 CDS
T07759
Symbol
NOD1
Name
(RefSeq) nucleotide-binding oligomerization domain-containing protein 1 isoform X1
KO
K08727
nucleotide-binding oligomerization domain-containing protein 1
Organism
psiu
Phocoena sinus (vaquita)
Pathway
psiu04621
NOD-like receptor signaling pathway
psiu05132
Salmonella infection
psiu05133
Pertussis
Brite
KEGG Orthology (KO) [BR:
psiu00001
]
09150 Organismal Systems
09151 Immune system
04621 NOD-like receptor signaling pathway
116759429 (NOD1)
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
116759429 (NOD1)
05133 Pertussis
116759429 (NOD1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
psiu04054
]
116759429 (NOD1)
Pattern recognition receptors [BR:
psiu04054
]
Cytoplasmic pattern recognition receptors
NOD-like receptors
116759429 (NOD1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NACHT
CARD
LRR_6
NLRC4_HD2
LRR_4
NOD2_WH
RsgA_GTPase
AAA_16
AAA_22
ABC_tran
AAA_18
PIF1
Motif
Other DBs
NCBI-GeneID:
116759429
NCBI-ProteinID:
XP_032499084
Ensembl:
ENSPSNG00000011664
LinkDB
All DBs
Position
9:46394905..46486725
Genome browser
AA seq
972 aa
AA seq
DB search
MEKQGRSEMEIIRSESHSYIRLLKVNREHLVTHVRNTQCLLDNLLQNEYFSAEDVEIVCA
CPTQPDKVRRILDLVQSKGEEVSEFFLYVLQRLTDAYVDLRPWLSEISFSPSQLTQSKAV
VNTDPVSRYSQKLRQQLGRDSKFVLCYAQKEELLLEEMYTDTVVELVDFGNESLGSLGSL
ACLLDPSTGVLNEQGETIFIFGDAGVGKSMLLQRLQSLWAAGQLDAELRFFFHFRCRTFS
CFKESASLCLQDLLFKHYCYPEQDPEEVFAFLLRFPHTALFTFDGLDELHSDFDLSGEPD
TSSPWEPAHPLVLLANLLSGKLLKGAHKLLTARTGVEIPRHLLWKKVLLRGFSPSHLRAY
AGRMFPERAVRQRLLDQLEANANLFSLCAVPLFCWIIFRCFQHFYDTFDGFLQLPDRTVT
LTDVFLLVTEVHLNRTQPTSLVQQNTRSQTETFRAGRGTLHSLGQVAHRGMEKSFFVFSQ
EEVQASEVQEGDLQLGFLRAVPELGLGGDQQSYEFFHLTLQAFFAAFFLVVDEKVGTREL
LCFFREWAPHGAAAAASCYPRFLPIQCLRGRGLAGEDPFKNKDHFHFTNLFLCGLLSKDK
QKLLRHLVPAATLRRKRRALWAYLFASLRSHLKHLPRVQSGRFSQVQAMPTFIWMLRCIY
ETQSEKVGQLAARGICANYLKLTFCNVCSADCSALSFVLHHFRKRLALDLDNNNLNDYGV
RELQPCFSRLTVIRLSVNQITDSGVKVLCEELTKYKILTFLGLYNNQITDVGARYIARIL
DECTGLTHLKLGKNKITSEGGKCLALAVKNSKSIFEVGMWGNQIGDEGARAFAEALRNHP
SLTNLSLAFNGISTEGGKSLAWALQQNASLRIFWLTKNELDDEVAESLAEMLKVNQTLKH
LWLIQNQITAKGIAQLADALQKNTGIMEICRRKACALLCCNVEPHFLSCASYGTHSPELK
WKLDKARGGQSL
NT seq
2919 nt
NT seq
+upstream
nt +downstream
nt
atggaaaagcagggccgcagtgagatggaaataatccggtcagagtcgcactcctacatc
agattgttgaaggtcaaccgggagcatctggtcactcacgtccgcaacactcagtgtctg
ctggacaacttgttgcagaatgagtacttctccgccgaagacgtggagatcgtgtgtgcc
tgccccacgcagcccgacaaggtccgcagaattctggacctggtgcagagcaagggcgag
gaggtgtccgagttcttcctctatgtgctacagcgactcacagacgcttacgtggacctc
aggccttggctgtcggagatcagcttctccccttcccagctcactcagagcaaagctgtt
gtcaacaccgatccagtgagcagatacagccagaagctgcgacagcaactgggccgcgac
tccaagttcgtcctgtgctacgcccagaaggaggagctgctgctggaggagatgtacacg
gacactgtcgtggagctggtcgacttcggcaacgagagcctgggcagcctgggcagcctg
gcctgcctcctggacccctccacgggcgtcctcaacgagcagggcgagaccatcttcatc
ttcggcgacgcgggcgtgggcaagtccatgctgctgcagcggctgcagagcctctgggcc
gcgggccagctggacgctgagctcaggttcttcttccacttccgctgccgcaccttcagc
tgcttcaaggagagcgcctcgctgtgcctgcaggacctgctcttcaagcactactgctac
ccggagcaggaccccgaggaggtgttcgccttcctgctgcgcttcccgcacacggccctc
ttcaccttcgacggcctggacgagcttcactcggacttcgacctgagcggcgagcccgac
acctcctccccctgggagcccgcccaccccctggtcctgctggccaacctgctcagcggg
aagctgctcaagggggcgcacaagctgctcacggcccgcacgggcgtcgagatcccgcgg
catctcctctggaagaaggtgctcctgcgcggcttctcccccagccacctgcgcgcctac
gctgggaggatgttccccgagcgtgccgtgcgccagcgcctgctggatcagctggaagcc
aacgccaacctcttcagcctgtgcgctgtgcccctcttctgctggatcatcttccggtgc
ttccagcacttctacgacaccttcgacggcttcctgcagctgcccgaccgcacggtgacg
ctgaccgacgtcttcctgctggtcaccgaggtccacctgaacaggacgcagcccaccagc
ctggtgcaacagaacacgcggagccagacggagaccttccgcgccggccggggcaccctg
cactcgctgggccaggtggctcaccggggcatggagaagagcttcttcgtcttcagccag
gaggaggtgcaggcgtccgaggtgcaggagggggacctgcagctgggtttcctgcgggcc
gtgccggagctgggcctcggaggggaccagcagtcctatgagttcttccacctcaccctc
caggccttctttgctgccttttttctggtggtggacgagaaggtgggcactcgggagctg
ctctgcttcttccgggagtgggctcctcatggggcggcagcagctgcgtcctgctatccc
cgcttcctacccatccagtgcctgaggggccgtggcctggccggggaggacccctttaag
aacaaggatcactttcatttcaccaacctcttcctgtgcgggctgctatccaaagacaaa
cagaaactcctgcgacacctggtgcctgccgccaccctgcggagaaagcgcagggccctg
tgggcttacctgttcgccagcctgcgctcccacctgaagcacctgccccgagttcagtct
gggagattcagccaggtgcaggccatgcccaccttcatctggatgttgcgctgcatctat
gagacgcagagcgagaaggtggggcagctggcggccaggggcatctgcgccaactacctc
aagctgaccttctgcaacgtctgctcggctgactgcagcgccctctccttcgtcctgcac
cacttccgcaagcgcctggcgctcgacctggacaacaacaatctcaatgactatggtgtg
cgggaactgcagccctgcttcagccgcctcaccgtcatcagactcagtgtgaaccagatc
accgacagtggggtgaaggtgctatgtgaagagctgaccaaatacaaaattctgacattt
ttaggcttatacaacaaccaaatcaccgatgtcggagccaggtacatcgccagaatcctg
gatgagtgcacaggcctcacgcacctgaaactgggaaaaaacaaaataacaagcgaagga
ggaaagtgtctcgccctggctgtgaagaacagcaaatccatctttgaagttgggatgtgg
ggcaatcaaatcggtgatgaaggagcaagggccttcgcagaggctctgaggaaccacccg
agcttgactaacttgagtcttgcattcaatggcatttctacagaaggaggaaagagcctc
gcgtgggccctgcagcagaatgcgtctctgagaatattctggctcaccaaaaatgaactt
gatgatgaagtggcagagagcttggcagagatgttgaaagtcaaccagacgttgaaacat
ttatggcttatccagaaccagattacagccaaggggattgcccagttggcagatgcatta
cagaagaacactggcataatggagatttgcagaaggaaggcatgtgctctgctctgctgc
aatgttgagccccatttcctttcttgtgcctcctacgggacacacagccccgagcttaaa
tggaaacttgataaagccagaggaggccaaagtctttga
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integrated database retrieval system
