Phocoena sinus (vaquita): 116759433
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Entry
116759433 CDS
T07759
Symbol
SHH
Name
(RefSeq) sonic hedgehog protein
KO
K11988
sonic hedgehog
Organism
psiu
Phocoena sinus (vaquita)
Pathway
psiu04340
Hedgehog signaling pathway
psiu04360
Axon guidance
psiu05200
Pathways in cancer
psiu05205
Proteoglycans in cancer
psiu05217
Basal cell carcinoma
psiu05226
Gastric cancer
Brite
KEGG Orthology (KO) [BR:
psiu00001
]
09130 Environmental Information Processing
09132 Signal transduction
04340 Hedgehog signaling pathway
116759433 (SHH)
09150 Organismal Systems
09158 Development and regeneration
04360 Axon guidance
116759433 (SHH)
09160 Human Diseases
09161 Cancer: overview
05200 Pathways in cancer
116759433 (SHH)
05205 Proteoglycans in cancer
116759433 (SHH)
09162 Cancer: specific types
05226 Gastric cancer
116759433 (SHH)
05217 Basal cell carcinoma
116759433 (SHH)
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
psiu01002
]
116759433 (SHH)
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
psiu00536
]
116759433 (SHH)
Peptidases and inhibitors [BR:
psiu01002
]
Cysteine peptidases
Family C46: hedgehog family
116759433 (SHH)
Glycosaminoglycan binding proteins [BR:
psiu00536
]
Heparan sulfate / Heparin
Morphogens
116759433 (SHH)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HH_signal
Hint
Peptidase_M15_3
Vint
Ribosomal_S6e
Motif
Other DBs
NCBI-GeneID:
116759433
NCBI-ProteinID:
XP_032499093
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All DBs
Position
9:2360813..2370021
Genome browser
AA seq
461 aa
AA seq
DB search
MDEMLLLARCLLVVLVSSLLMCSGLACGPGRGFGKRRNPKKLTPLAYKQFIPNVAEKTLG
ASGRYEGKITRNSERFKELTPNYNPDIIFKDEENTGADRLMTQRCKDKLNALAISVMNQW
PGVKLRVTEGWDEDGHHSEESLHYEGRAVDITTSDRDRSKYGMLARLAVEAGFDWVYYES
KAHIHCSVKAENSVAAKSGGCFPGSATVHLEQGGTKLVKDLRPGDRVLAADDEGRLLYSD
FLTFLDRDHGAKKVFYAIETREPRERLLLTAAHLLFVAPHNGSAGREPEALSGAGRPPGG
APERRALFASSVRPGQHVYVVAERGGDRRLLPAAVHSVTLREESTGAYAPLTAQGTILIN
RVLASCYAVIEEHNWAHRAFAPYRLAHALLAALAPSRTDRGGGGGGGRVPPAAPGAPAAP
GATDAPGASGIHWYSQLLYQIGTWLLDSEALHPLGMAVKSS
NT seq
1386 nt
NT seq
+upstream
nt +downstream
nt
atggacgagatgctactgctggcgagatgtctgctggtggtgctggtctcctcactgctg
atgtgctcggggctggcgtgcggacccggccggggatttgggaagaggcggaacccaaaa
aaactgacccctttagcctacaagcagttcatccccaacgtggctgagaagaccctaggg
gccagtggaagatatgaagggaagatcaccagaaactcggagcgatttaaggaactcacc
cccaattacaaccctgacatcatatttaaggatgaagaaaacactggagcggaccggctg
atgactcagcggtgcaaggacaagttgaacgccttagccatctccgtgatgaaccagtgg
ccaggagtgaagctgcgggtgacagagggctgggacgaggacggccaccactcagaggag
tcgctgcactacgagggccgtgcggtggacatcaccacctcggaccgcgaccgcagcaag
tacggcatgctggcacgcctggccgtggaggccggcttcgactgggtctactacgagtcc
aaagcgcacatccactgctcggtgaaagcagagaactcggtggcggccaaatcgggcggc
tgcttcccgggctcggccacggtgcacctggagcagggcggcaccaagctggtgaaggac
ctgcgccccggagaccgcgtgctggcggccgacgacgagggccggctgctctacagcgac
ttcctcaccttcctggaccgcgaccacggcgccaagaaggtcttctacgcgattgagacc
cgggagcctcgcgagcgtctgctgctcaccgccgcgcacctgctctttgtcgcgccgcac
aacggctcggccggccgggagcccgaggcgctgtcgggcgccgggcggccgcctgggggc
gcgccggagcgccgggcgctcttcgccagcagcgtgcgccctggccagcacgtgtacgtg
gtggccgagcgcggcggggatcggcggctcctgccggccgccgtgcacagcgtgacgctg
cgcgaggagagcacgggcgcgtacgcgccgctgacggctcagggcaccatcctcatcaac
cgggtgctggcgtcgtgctacgcggtcatagaggagcacaactgggcgcaccgagccttc
gcgccctaccgcctggcgcacgcgctcctggccgcgctggcgccctcgcgcacggaccgc
ggcgggggcgggggcggcggccgcgtgcccccggccgcgccaggtgcgccggctgcgcca
ggtgcgaccgacgcgccaggcgcctcgggcatccactggtactcgcagctgctctaccaa
ataggcacctggctgttggacagcgaggccttgcacccgctgggcatggcggtcaagtcc
agctga
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