Phocoena sinus (vaquita): 116759476
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Entry
116759476 CDS
T07759
Symbol
TRIM24
Name
(RefSeq) transcription intermediary factor 1-alpha isoform X1
KO
K08881
tripartite motif-containing protein 24 [EC:
2.3.2.27
]
Organism
psiu
Phocoena sinus (vaquita)
Brite
KEGG Orthology (KO) [BR:
psiu00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01001 Protein kinases [BR:
psiu01001
]
116759476 (TRIM24)
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
psiu04121
]
116759476 (TRIM24)
Enzymes [BR:
psiu01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
116759476 (TRIM24)
Protein kinases [BR:
psiu01001
]
Serine/threonine kinases: Other
TIF1 family [OT]
116759476 (TRIM24)
Ubiquitin system [BR:
psiu04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
116759476 (TRIM24)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Bromodomain
zf-B_box
ANCHR-like_BBOX
PHD
PHD-1st_NSD
zf-RING_5
zf-RING_UBOX
zf-C3HC4
zf-RING_2
zf-C3HC4_2
CRIC_ras_sig
Motif
Other DBs
NCBI-GeneID:
116759476
NCBI-ProteinID:
XP_032499188
Ensembl:
ENSPSNG00000019786
UniProt:
A0A8C9CLZ9
LinkDB
All DBs
Position
9:complement(15140856..15235234)
Genome browser
AA seq
1050 aa
AA seq
DB search
MEVAVEKAAAAAAAASAAAAGGPSAPPSGENEAESRQGPDSERGGEAARLNLLDTCAVCH
QNIQSRAPKLLPCLHSFCQRCLPAPQRYLMLPAPMLGSAETPPPVPAPGSPVSGSSPFAT
QVGVIRCPVCSQECAERHIIDNFFVKDTTEVPSSTVEKSNQVCTSCEDNAEANGFCVECV
EWLCKTCIRAHQRVKFTKDHTVRQKEEVSPEAVGVTSQRPVFCPFHKKEQLKLYCETCDK
LTCRDCQLLEHKEHRYQFIEEAFQNQKVIIDTLITKLMEKTKYIKFTGNQIQNRIIEVNQ
NQKQVEQDIKVAIFTLMVEINKKGKALLHQLESLAKDHRMKLMQQQQEVAGLSKQLEHVM
HFSKWAVSSGSSTALLYSKRLITYRLRHLLRARCDASPVTNNTIQFHCDPSFWAQNIINL
GSLVIEDKESQPQMPKQNPVTEQNSQPPGGLSSNQLSKFPTQISLAQLRLQHMQQQVMAQ
RQQVQRRPAPVGLPNPRMQGPIQQPSISHQQPPPRLINFQNHSPKPNGPVLPPHPQQLRY
PPNQSTPRQAIKPNPLQMAFLAQQAIKQWQVSSGQATPSAANSTSSTPSSPTITSAAGYD
GKTFGSPMIDLSSPVGGPYNLPSLPDIDCSSTIMLDNIVRKDTSTDHGQPRPPSNRTVQS
PNSSVPSPGLTGPVTMTSVHPPIRSPSASSVGSRGSSGSSSKPAGADSTHKVPVVMLEPI
RIKQENSGPPENYDFPVVIVKQESDEESRAQNTNYPRSILTSLLLNSSQSSASEESVLRS
DAPDSTGDQPGLNQENSSNGKSEWLDASQKSPLHVGETRKEDDPNEDWCAVCQNGGELLC
CEKCPKVFHLSCHVPTLANFPSGEWICTFCRDLSKPEVEYDCDAPIHNSEKKKTEGLIKL
TPIDKRKCERLLLFLYCHEMSLAFQDPVPLTVPDYYKIIKNPMDLSTIKKRLQEDYSMYT
KPEDFVADFRLIFQNCAEFNEPDSEVANAGIKLESYFEELLKNLYPEKRFPKVEFRNESE
DNKFSDDSDDDFVQPRKKRLKSIEERQLLK
NT seq
3153 nt
NT seq
+upstream
nt +downstream
nt
atggaggtggctgtagagaaggcggcggcggcggccgcggcggcttcggcggcggccgcc
ggggggccctcggctccgccgagcggggagaacgaggccgagagtcggcagggccccgac
tcggagcgcggaggcgaggcggcccggctcaacctgttggacacttgcgccgtgtgccac
cagaacatccagagccgggcgcccaagctgctgccctgcctgcactccttctgccagcgc
tgcctgcccgcgccccagcgctacctcatgctgcccgcccccatgctgggctcggccgag
accccgccgcccgtccccgcccccggctcgccggtcagcggctcctcgccgttcgctacc
caagtgggagtcattcgatgtccagtttgcagccaagaatgtgccgagagacacatcata
gataatttttttgtgaaggacactactgaggttcccagcagtacagtagaaaagtctaat
caggtatgtacaagctgtgaggacaatgcagaagctaatgggttttgtgtagagtgtgtt
gaatggctctgcaagacatgcatcagagctcatcaaagggtgaaattcacaaaagaccac
actgtgagacagaaagaggaagtatctccagaggcagttggtgtgaccagtcagcgacca
gtgttttgtccttttcataagaaggagcagctgaaactttactgtgaaacatgtgacaaa
ctgacatgtcgggactgccagttattagaacataaagagcacagatatcaatttatagaa
gaagcttttcagaaccagaaagtgatcatagatacactaatcaccaaactgatggaaaaa
acaaaatacataaaattcacaggaaatcagatccaaaacaggataattgaagtaaatcaa
aatcagaagcaggtggaacaggatattaaagttgccatatttacattgatggtagaaata
aataaaaaaggaaaagctctactgcatcagcttgagagtcttgcaaaagatcatcggatg
aaacttatgcaacagcagcaggaagtggctggactttctaaacagttggaacatgtcatg
catttttctaaatgggcagtttccagtggcagcagtacagcattactttatagcaagcga
ctgattacataccggttacggcacctccttcgagcaaggtgtgatgcttccccagtgacc
aacaataccatccaatttcactgtgatcctagtttctgggctcaaaatattatcaattta
ggttctttagtaatcgaagataaagagagtcaaccacaaatgcctaagcagaatcctgtc
acggaacagaattcacagccaccaggtggtttatcttcaaaccagttatccaagtttcca
acacagatcagcctagctcaattacgactccagcatatgcagcaacaggtaatggctcag
aggcaacaggtgcaacggaggccagcacctgtgggtttaccaaaccctagaatgcagggg
cccatccagcaaccttccatctctcatcagcaacctcctccacgtttgataaattttcag
aatcacagccccaaacccaatggaccagttcttcctcctcatcctcaacagctaagatat
ccaccaaaccagagtacgccacgacaagcaataaagcccaaccccctgcagatggctttc
ctggctcaacaagccataaaacagtggcaggtcagcagtgggcaggccaccccatcagct
gccaacagcacgtcctctactccttccagtcccaccattactagtgcagcaggatatgat
ggaaagacttttgggtcacctatgattgatttgagctcacccgtgggaggtccctataat
cttccttctcttccagatattgactgctcaagtactattatgctggacaatattgtgagg
aaagatactagtacagatcatggccagccaagaccaccctcaaacagaaccgtccagtca
ccgaattcatcagtgccatctccaggccttacaggacctgttactatgacaagtgtacac
ccaccaatacgttcacctagtgcctccagcgttgggagccgaggaagctctggctcttcc
agcaaaccagcaggagctgattctacacacaaagtcccagtggtcatgttggagccaatc
cgaataaaacaagaaaacagtggaccacctgaaaattatgattttcctgttgttatagtg
aaacaagaatcagatgaagaatctagggctcaaaataccaactatccaagaagcatactc
acctccctgctcttaaatagtagtcagagctctgcatctgaagagtctgtgttaagatca
gatgcccctgacagcacaggagatcagcctggacttaaccaggaaaattcctcaaatgga
aagtctgagtggctagatgcctcacagaagtcaccccttcacgttggagagacaaggaaa
gaggatgaccccaatgaggactggtgtgcagtttgtcagaatggaggggaactcctatgc
tgtgagaaatgtcccaaagtattccatctctcttgtcatgtgcccacattggcaaatttt
ccaagtggagagtggatttgcactttctgccgagacttatctaaaccagaggttgaatat
gattgtgatgctcccattcacaactcagaaaaaaagaaaactgaaggccttatcaaacta
acaccaatagataaaaggaagtgtgaacgcctacttttatttctttattgccatgaaatg
agcctggcttttcaagacccagttcctctaactgtgccagattattacaaaataattaaa
aatccaatggacttgtcaaccatcaagaaaagactacaagaagattattccatgtataca
aagcctgaagattttgtagctgattttagattgatctttcaaaactgtgctgaattcaat
gagcctgattcagaagtagccaatgctggtataaaacttgaaagctattttgaagaactt
ctgaagaacctttatccagaaaaacggtttcctaaagtagaattcaggaatgaatcagaa
gataataaatttagtgatgactcagatgatgactttgtacagccccggaagaaacgcctc
aaaagcatagaggaacgccagttgcttaaataa
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