Phocoena sinus (vaquita): 116759601
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Entry
116759601 CDS
T07759
Symbol
LAMB1
Name
(RefSeq) laminin subunit beta-1 isoform X1
KO
K05636
laminin, beta 1
Organism
psiu
Phocoena sinus (vaquita)
Pathway
psiu04151
PI3K-Akt signaling pathway
psiu04510
Focal adhesion
psiu04512
ECM-receptor interaction
psiu05145
Toxoplasmosis
psiu05146
Amoebiasis
psiu05165
Human papillomavirus infection
psiu05200
Pathways in cancer
psiu05222
Small cell lung cancer
Brite
KEGG Orthology (KO) [BR:
psiu00001
]
09130 Environmental Information Processing
09132 Signal transduction
04151 PI3K-Akt signaling pathway
116759601 (LAMB1)
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
116759601 (LAMB1)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
116759601 (LAMB1)
09160 Human Diseases
09161 Cancer: overview
05200 Pathways in cancer
116759601 (LAMB1)
09162 Cancer: specific types
05222 Small cell lung cancer
116759601 (LAMB1)
09172 Infectious disease: viral
05165 Human papillomavirus infection
116759601 (LAMB1)
09174 Infectious disease: parasitic
05146 Amoebiasis
116759601 (LAMB1)
05145 Toxoplasmosis
116759601 (LAMB1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EGF_laminin
LAMININ_IV_B
Laminin_N
EGF_LMN_ATRN
LAMB1
CorA
F5_F8_type_C
ATG17_like
BNR_6
Motif
Other DBs
NCBI-GeneID:
116759601
NCBI-ProteinID:
XP_032499449
Ensembl:
ENSPSNG00000004801
LinkDB
All DBs
Position
9:complement(91204370..91315404)
Genome browser
AA seq
1796 aa
AA seq
DB search
MGRLQMFAFSFLALCGAQVSAQEPEFSYGCAEGSCYPATGDLLIGRAQKLSVTSTCGLYK
PEPYCIVSHLQEDKKCFICNSQDPYHETLNPDSHLIENVVTTFAPNRLKIWWQSENGVEN
VTIQLDLEAEFHFTHLIMTFKTFRPAAMLIERSSDFGKTWGVYRYFAYDCESSFPGISTG
PMKKVDDIICDSRYSDIEPSTEGEVIFRALDPAFRIEDPYSPRIQNLLKITNLRIKFVKL
HTLGDNLLDSRMEIREKYYYAVYDMVIRGNCFCYGHASECAPVDGFHAEGEGMVHGHCMC
RHNTKGLNCEQCMDFYHDLPWRPAEGRNSNACKSFSCRRSCLAECNCNEHSSSCHFDMAV
YLATGNVSGGVCDECQHNTMGRNCEQCKPFYYQHPERDIRDPNLCEQCTCDPAGSQNKGV
CDSYTDFSAGLIAGQCRCKLHVEGEHCDICKEGFYGLSTEDPFGCKSCTCSPLGTIPGRN
PCDSETGYCFCKRLVTGQHCDQCLPEHWGLSNDLDGCRPCDCDLGGALNNSCSAESGQCV
CQPHVIGRQCNGVESGYYFPTLDHYIYEAEEANLGPGVSIVERQYIQDRIPSWTGAGFVR
VPEGAYLEFFIDNIPYSMEYDILIRYEPQLPDHWEKAVITVQRPGKIPTSSRCGNTVPDD
DNQVVSLSPGSRYVVLPRPVCLEKGVNYTVRLELPQYTSSDSNVDSPYTLIDSLVLMPFC
KSLDIFTVGGSGDGVVTNSAWETFQRYRCLENSRSVVKTPMTDVCRNIIFSISALLHQTG
LACECDPQGSLSSVCDPNGGQCQCRPNVVGRRCDRCAPGTFGFGPSGCKPCECHLQGSVN
AFCDPITGQCHCFQGVYTRQCDRCLPGYWGFPSCQPCQCNGHADDCDSVTGECLSCQDYT
TGHNCERCSAGYYGDAIIGSGDHCRPCPCPDGPDSGRQFASSCYQDPVTLQLACVCNPGY
IGSRCDDCASGFFGNPLDVGGTCQPCRCHHNIDTTDPEACDKETGRCLKCLYHTEGEHCQ
LCRFGYYGDALQQDCRKCVCNYLGTVQERCNGSDCQCDKITGQCLCLPNVMGQNCDRCAP
NTWQLASGTGCDPCNCDAAHSFGPSCNEFTGQCQCMPGFGGRTCSECQELFWGDPSVECR
ACDCDPRGIETPQCDQSTGQCVCVEGVEGPRCDKCTRGYSGVFPDCMPCHQCFALWDVII
AELTNRTRKFLEKAKALKISGVIGPYRGTVDSVEKKVNEIRDILAQSPAAEPLKNIGNLF
EEAEKLTKDVTEKMAQVEIHLSDTATQNNSTARELDALQTEAESLDDTVKELAEQLEFIK
NSDIRGALDSITKYFQMSLEAEERVNASTTDSSGPVEQSARTRDRVEDLMLERESQFREK
QEEQARLLDELAGKLQSLDLSAAAEMTCGTPPGASCSETECGGPNCRTDEGQKQCGGPGC
GGLVAVAHGAWQKAMDFDRDVLSALAEVERLSKMVSEAKLRADEAKQNAQAVLLKTNATK
EKVDKSNEDLRNLIKQIRNFLTQDSADLDSIEAVANEVLKMEMPSTPQQLQNLTEDIRER
VESLSQVEVILQQSAADIARAEMLLEEAQRASNSATDVKVTADMVKEALEEAEKAQIAAE
KAIKQADEDIQGTQNLLTSIESETAASEETLFNASQRLSELERNVEELKRKAAQNSGEAE
YIEKVAYTVKQSAEDVKKTLDGELDEKYKKVENIIAQKTEESADARRKAELLQNEAKTLL
AQANSKLQLLKDLERKYEDNQKYLEDKAQELVRLEGEVRSLLKDISQKVAVYSTCL
NT seq
5391 nt
NT seq
+upstream
nt +downstream
nt
atggggcggctccagatgttcgcattcagtttcttagccctgtgcggagcccaagtgagt
gctcaagaacccgagttcagctacggctgcgcggagggcagctgctacccggccaccggc
gaccttctcatcggccgagcccagaagctctccgtgacctcgacctgtgggctgtacaaa
cccgagccttactgtatcgtcagccacctccaggaggacaaaaaatgcttcatatgcaat
tcacaagatccttatcatgaaaccctgaaccctgacagtcatctcattgaaaacgtggtc
acgacatttgctccaaaccgtcttaagatctggtggcaatccgaaaatggcgtggaaaat
gtaaccatccaactggatttggaagcagaattccatttcactcatctcatcatgaccttc
aagacattccgtccagccgctatgctgatagaacgatcgtccgactttggaaaaacctgg
ggtgtatacagatactttgcctatgattgtgagagctcatttcccggcatttccaccggt
cccatgaaaaaagtcgatgatataatttgtgattcccgatattctgacattgaaccctca
acggaaggagaggtgatttttcgtgctttagatcctgctttcagaatagaagatccttac
agtccaaggatacagaatctcttaaaaatcaccaacttgagaatcaagtttgtgaaacta
catactttgggagataaccttttggattccagaatggaaatcagagaaaagtactattac
gcggtttacgatatggtgattcgaggaaactgcttctgctatggccacgccagcgagtgt
gccccggtggatggattccacgcagaaggagaaggaatggttcacggacactgcatgtgc
aggcataacaccaagggcttaaactgtgaacagtgcatggatttctaccatgatttacct
tggagacccgctgaaggtcgaaacagcaatgcctgtaaaagcttttcctgccgtcggtct
tgtctcgcagaatgtaactgcaacgaacattccagctcttgccacttcgacatggcggtc
tacttggccactggcaacgtcagcggaggggtgtgtgatgagtgtcagcacaacacgatg
gggcgcaactgcgagcagtgcaaaccgttttactaccagcacccggagagagacatccgg
gatcctaatctctgtgaacaatgtacctgtgacccagctggttctcagaacaagggagtc
tgtgacagttacacggatttttctgccggtctcattgctggtcagtgtcggtgtaaatta
cacgtggaaggagaacattgtgatatctgcaaagaaggcttctatggtttaagcactgaa
gatccatttggttgtaaatcttgtacttgcagtcctctgggaacgattcctggcaggaat
ccttgtgattctgagactggttactgcttctgtaagcgtctggtgacaggacagcattgt
gaccagtgtctgccagagcactggggcttaagcaacgacttggatggatgtcgaccttgt
gactgtgaccttgggggagccttaaacaatagctgctctgcagagtcaggccagtgcgtc
tgccaaccccacgtgatcggacgccagtgcaatggagtggaatctggttactacttcccc
accttggatcactacatctacgaagcagaagaagccaacttggggcctggggtcagcata
gtggagcggcagtatatccaggaccgtattccttcctggactggagcaggcttcgtccga
gtgcctgaaggggcttatttggagttcttcatcgacaacataccatattctatggagtat
gacatcctaattcgctatgagccacagctccccgaccactgggagaaagctgtcatcaca
gtgcagcgacctgggaagattccaaccagcagccgatgtggaaacactgttcctgatgat
gacaaccaggtggtgtccctatcgcctggctccaggtatgtggtcctcccccgccccgtg
tgcttggagaagggtgtgaactacacagtgaggttggagctgccccagtacacctcctcg
gacagcaatgtggacagcccctacacgctgatcgattctcttgttctcatgccattctgt
aagtcgctggacatcttcactgtgggaggctcaggagatggggtcgtcaccaacagtgcc
tgggaaacctttcagagataccgatgtctggagaacagcagaagcgtcgtgaagactccg
atgaccgatgtttgcagaaacatcatctttagcatttccgccctgttacaccagacaggc
ctggcttgtgagtgtgaccctcagggctccttaagttccgtctgtgaccccaacggaggc
cagtgtcagtgccggccaaacgtggttggaagaaggtgtgacagatgtgcgcccggcacc
tttggctttggccccagcgggtgcaaaccttgtgagtgccatctgcaaggatctgtcaat
gctttctgtgaccccatcaccggccagtgccactgtttccagggggtgtacacgcggcag
tgtgaccggtgcttacccgggtactggggctttccaagttgccagccctgccagtgcaac
ggccatgcagatgactgcgactctgtgacaggggaatgcctgagctgccaggactacacc
acggggcataactgtgaaaggtgctcggctggttactatggagacgccatcattgggtca
ggagatcactgccgtccttgtccttgtccagatggtcccgacagcggacgccagtttgcc
agtagctgttatcaagaccctgttactttacagcttgcctgtgtctgtaatcctggatac
atcggctccagatgcgacgactgcgcctcgggcttctttggcaatcccttggacgtgggg
ggcacgtgtcagccttgtcggtgtcaccacaacatcgacacgacggacccagaagcctgt
gacaaggagaccgggaggtgcctcaagtgcctgtaccacacggagggcgagcactgccag
ctctgccgcttcggttactatggcgacgccctccagcaggattgtcgcaagtgtgtctgc
aattacctgggcaccgtgcaggagcgctgtaacggctctgactgccagtgcgacaaaatc
accgggcagtgcttgtgtctccctaatgtgatgggccagaactgtgaccgctgtgcaccc
aacacctggcagctggccagcgggacagggtgtgacccgtgcaactgcgacgctgctcat
tcctttgggccgtcttgtaacgagttcacggggcagtgccagtgcatgcctggcttcgga
ggccgcacgtgcagcgagtgccaggagcttttctggggggaccccagcgtggagtgccga
gcctgtgactgcgaccccaggggcatcgagacaccgcagtgtgaccagtccaccggccag
tgtgtctgcgtcgagggtgtggagggtccacgctgtgacaagtgcactcgggggtactcg
ggcgtcttccccgactgcatgccctgccaccagtgctttgccctttgggacgtgatcatc
gccgagctgaccaacaggacccggaagttcctggagaaagccaaggccttgaagatcagt
ggcgtgattgggccttaccgggggactgtggactcggtggagaagaaagtcaacgagatc
agagacatcctggcccagagcccagccgccgagccgctgaagaacatcgggaacctcttt
gaggaagcagagaaactaaccaaagatgttacagaaaagatggctcaagtagaaatacat
ttatccgacacagctacgcaaaacaacagcacggccagagaactagacgctctgcagaca
gaagcagaaagcctggatgacacagtgaaggagcttgctgaacaactggaatttatcaaa
aattcagatattcggggcgccttggacagcatcaccaagtatttccagatgtctctcgag
gcagaggagcgtgtgaacgcctccaccactgattccagtggccccgtggagcagtcggcc
cgcactcgggacagagtggaagacttgatgttggagcgagagtcccagttcagggaaaaa
caggaggagcaggcccgccttctggatgaactggcaggcaaactacaaagtcttgacctt
tcagctgctgccgaaatgacgtgtggaacacctccgggagcttcctgttccgagaccgaa
tgtggcggcccaaactgcagaactgacgaaggacagaagcagtgtggggggcccggctgt
ggcgggctggtcgctgtcgcacatggcgcctggcagaaagccatggactttgaccgagat
gtcctgagtgccctggctgaggtggaacggctctccaagatggtctctgaagccaaactg
agggcggatgaggcaaaacagaatgctcaagctgttctgttgaaaaccaatgctaccaaa
gaaaaagtggacaagagcaatgaggatctgagaaatctgatcaagcaaatcaggaacttt
ttgacccaggatagtgctgacctggacagcattgaagcagttgctaacgaagtactgaaa
atggaaatgcctagcaccccacagcagttacagaacttgacagaagacattcgtgaacga
gttgaaagcctttctcaagtagaggttattctacagcagagtgctgctgacattgccaga
gctgagatgttgttagaagaagctcaaagagccagcaacagtgcgacagatgttaaagtc
actgcagacatggtaaaggaagctctggaagaagcagaaaaggcccagattgcagcagag
aaggcaattaaacaagcagatgaagacatccaaggaacccagaacctgctaacttcaatc
gagtctgaaacagcagcttccgaggaaaccttgttcaatgcctcccagcgcctcagcgag
ctagagagaaacgtggaagaacttaagcggaaagctgcccagaactctggggaggcagaa
tatattgaaaaagtagcatatactgtgaaacaaagtgcagaagatgttaagaagactctg
gacggtgaacttgacgaaaagtacaagaaagtggaaaatataattgcccaaaaaactgaa
gagtcagctgatgccagaaggaaagcggaactgctacaaaacgaagcaaaaacacttttg
gctcaagcaaacagcaagctgcaactcctgaaagatttagaaagaaaatatgaggacaat
caaaaatatctagaagacaaagctcaagaattagtaagactagaaggagaagtccgttca
ctcctaaaagatataagccagaaagtggctgtttacagcacctgcttgtaa
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integrated database retrieval system
