Phocoena sinus (vaquita): 116759725
Help
Entry
116759725 CDS
T07759
Name
(RefSeq) LOW QUALITY PROTEIN: SCO-spondin-like
KO
K24434
SCO-spondin
Organism
psiu
Phocoena sinus (vaquita)
Brite
KEGG Orthology (KO) [BR:
psiu00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04990 Domain-containing proteins not elsewhere classified [BR:
psiu04990
]
116759725
Domain-containing proteins not elsewhere classified [BR:
psiu04990
]
Thrombospondin domain-containing proteins
Other thrombospondin domain-containing proteins
116759725
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VWD
C8
Ldl_recept_a
TIL
TSP_1
VWF
Pacifastin_I
TSP1_spondin
Motif
Other DBs
NCBI-GeneID:
116759725
NCBI-ProteinID:
XP_032499664
LinkDB
All DBs
Position
9:complement(6648055..6674532)
Genome browser
AA seq
3120 aa
AA seq
DB search
MLLPALLCGTAWALANGQWCEWTETILVEEEVTPRQEDLVPCTSLHHCQRRGWRLDLTWS
GRAGLCPIYKSPETRPAPWNLTVRACCPGSGWGGGTHCTLALAEASLEGHCFATWLCQPR
AGSANASVGSLEECXAWPWGHSWRDGHSQPCHSCSSHKLPGQDVCHQLLDGPCRECHAQV
PPAEYHEACLFAYCAGAPAGSGREERLEAACSTLASYAQDRAARRIHVRWRKPGFCERLC
LGGRLCSDCASACPPSCSAVGEGGEGSCREECVSGCECPPGLFWDRALCVPAARWPCYHR
RRRYDPGDTVRQLCSPRVGQDGRWLCAQAPCPAEGAVGGDGHYLTFDGRSFSFRGRAGRR
FSLVQDFVKRPLLTVREHGDCNAGSCLHAIXVSLGDTHVQLRDSGAVLVDGQDVVLPWSG
PGGLSVSRASSTFLLLRWPGARILXGASDPAAYITLDTRHDLQVAWNQQADFLTPAGNME
TSIAAFASKFQVAGEGRCPSEDSAPLSRCSTHTQRHIFVEAACAILHGPVFQECHGLVDG
ARFHLRCSAPVCGCTHGGDCPCPVLAAYARYCAQEGSLLSWRDQTLCPVLCPGGQEYQEC
APVCGWNCGETEGCGELGSCVAGCNCPLGLLWDPEGQFVPPGSCPCQLGAHRYAPGSATM
KGCNRCICQERGLWNCTAQRCAPPREFCPRGLVCVPGASLLTCDSPSVNGSCPPGSMGGC
VSPPGAVLLGEGCTPPELCPCCHSGQWYLPNAAIQEDYNIWVCRGRQWRCMGQWCDGRCQ
ASGAPHYVTFDGLALTFPGACEYLLVREASGRFTVSAXDLPCGACGITCTKALTVRLQST
VVHMLRGQAVTVNGVSVCPPKVYTGSGLSLRRAGLFLQLTTCLGLTLLWDGGTRVLVQLS
PEFRGRVAGLCGDFDGDASNDLRRRQGVLLEPTAELAAHSWCLNPLCPEPGELRHPCAVN
TPRAGWARARCGVMRQPLFARCHAEEPPEQHFEWCVRDTRRCDSGGDCECLCSAIAAYTD
ERCARHGIHVRWRSQELCPLQCEGGQGYEACGPXCVPPPTCHDHGPEPGWHCQAVARVEG
CFCPEGALPHXGVRLEPASCPCKWRGSFFPPGTVLQKDCGNCTCQQSQWLSGDDGSRGEE
LVPGCAEGEAPCQEGGHCVPHGWLCDHQDDCGDGSDEEGCATPGRGEGQMSCSSGHCLPL
ALICDGQDDCGDGTDEQGCPCPQDSLACANGRCLPPALLCDGPPDCPDAADEESCWGQVN
CTPGEVSCIDGACVGTIHLCDGIWDCPDGANEGPGHCPLPSLPTPPAGTLPGPSAVSRET
APTPQFSVTPPCGLFASGGGSGECAPRGWRCDGEDGEDGRDRPCAPHLPPCARGPLCVAP
AQLCDGAAHCPHGSDGDPGACEGLPVPGGPNRTGLPGPEYSYPDGLCLGFQLVCAGQPDC
ELAGEAGPSWEEQCCEAWGPWSPWALCSQTCGPGVQGCSRRCSPPSLPVRRHCPGPKHQT
QACVTATCPVDSEWTSWSPWSPCSEPCRGTMARQRQCRPPRNGGHTCAVLPGDPPSTRQT
RPCPQDGCPNVTCSGELVFHPCAPCPLICDDISGQAECPPDRPAAAQPHPGPSLGCWHPT
GQVLGDKGRCVRPWQCPCLVDSTHYWRGQRIEADCRLCICRDGRPRRCRPNPGCAVNCGW
SSWSPWTECLGPCGSRSIQWSFQSANNVCLAGPQLLHPPGTCGDLDLTSSSHLGSRLCSG
CFHGHHGPQTRTPTLCAPISLNTRTPSTSLGIPGLLLHQFYALEVQKRGAGGPQVQGRVW
ALWFAPCASGGTWGEACRSLWDRSTGTACFHTPRLGQLQFLGFGVGSGRGPARVRRVGDR
WREGPCRXCQCLHGSTSRSSHYCPLGSCPQGWVLVEGVGESCCHCVLPGEWVCGVAEGPQ
GEEGGEDSEGATGGSAELGAPATPASGRQPTVRHMAPPAPSPQIGAPLITYILPPPRDPC
YSPLGLAQLPEGSLHALPQQLERPTWAAILRPPTEAPGQQGWSPVEEAYTQWHAQPPYLQ
LDLLWPWNLTGTLLPELLCSPTTFPAAPRADASPRWDPGGEVNVPRLSCQSLCPLGKQWL
DSAQGPASCXPRGTDQPSHPGCCCRALNSGRVALLCQPRDQHMTPGEWHSEHRLLWSPWT
PWSECLASCGPARRHRHRFCTRXPGVTPSSLALLPPLASAPPPCPGPEAEEEPCLLLGCD
RESCGPSPRHSCVGGLQSRTPPQGLGDYCEGPRAQGAACQALPCPVTNCTAIQGAEYSPC
GPPCPCSCDDLVHWVWHCQPGGYYPPGQVLSADGAVCVQPSHCSCLGLLTRERHRPGTQL
ARPDGCNCRTCSEGRLTCTDLPPRYAPCSWGPWEDGSVSCRGGEQLCSRRCARPPCPRPX
RLSRVCCTQACREAGCPAGRLYRECQPGEGCPFSCAHITRQVGCFSAGCEEGCHCPEGTF
LHRLACVPVTTHPAWSPRLSPSLSAFTSADPVASAALPGAAGCCSWGPWGPCPCPLAEAD
PTCSGTFLHLVTQACSTGPCLEECVWSIWTRCSCQVLVQQRYRHQGPAPGGPPRTRLDGH
FRPCLISSCSDSCAPPSEFQACGSLRAGLCATHLPPCQPGCYCPERLLEQAGGCVPSELC
NYRHISGEGAGVTLAPGDHLQLGCKECEYQRGEQQRTSRGCQGLLPLSRWSEWSPCGPCX
SRTALEEHWPGDPAGLSSTSVPTLASEQHRCRPCLDPETGRPWAGDPDLCTVPLSQQRLC
PDPGACQDLCQWSPWGAWSRCQIPCSGGFQLRWXGGCQGPWAQTESCNMGPCPGESCEAR
DPVPTLDRADHCPRSCADLWVRVQCLQGRCHTGCRCPPGQLVQDGCHVPMSSCCCGLPSP
SASWVLAPAEXGWLDCKSCTCVNGSLVCRPHERPALGPWSAWSSCKEGPAGAPCQAQDTE
QRQERNLQPCPERPPGQVLSPRATSCPRLCSHLQPGTLCMQEPCQLGCDCPGGQLLRYGT
CVRPALPWGLSLTPEEQGRELPPGTLLTQNCTRCVGQGGAFSCPVAGCRVPPPRGEMWQQ
VAPGELGPCEQTCREPNATETQGSCSAGQAPGAPACLQTTASGGTTGVPTRCDTTALHAP
NT seq
9363 nt
NT seq
+upstream
nt +downstream
nt
atgctgctccctgccctcctctgcgggacggcatgggcactggctaacgggcagtggtgt
gagtggacagagaccatcctggtggaggaggaagtaaccccccgtcaggaggacctggtg
ccctgcaccagcctccatcattgccagcgccggggctggaggctggacttgacttggagt
ggccgtgcagggctctgccccatctacaagtccccggaaaccaggcctgctccatggaac
ctgacggtgagggcttgctgcccaggctcggggtggggggggggtacccactgcaccctg
gcccttgccgaagccagccttgagggccactgctttgccacatggctgtgccagccgagg
gcaggctcagctaacgcttctgtgggaagcctggaggagtgctgagcctggccttgggga
cacagctggcgggatggccactcccagccctgccacagctgctccagccacaaactcccc
ggccaggatgtgtgccatcagttgctggacggtccatgcagggaatgccatgcccaggtg
ccccctgctgagtaccacgaggcctgcctctttgcctactgtgctggggccccagcgggc
agtgggcgggaggagcggctggaggccgcgtgctccaccttggccagctacgcccaggat
cgtgcggcgcggcgcatccacgtgcgctggaggaagcccggcttctgcgagcgcctgtgc
ctagggggccggctgtgctcggactgcgcctcggcctgcccgcccagctgctcggcagtg
ggcgaggggggcgaggggtcctgcagggaagagtgcgtgagcggctgcgagtgcccgccc
ggcctcttctgggaccgcgccctctgtgtgcctgccgcccgctggccctgctaccaccga
cgccggcgctacgaccccggtgacaccgtgcgccagctgtgcagcccgcgcgttggccag
gacggccgctggctctgcgcgcaggcgccgtgcccagccgagggcgcggtgggcggggac
gggcattacctcaccttcgatgggcggagcttctccttccgcggccgcgcaggtcgccgc
ttcagcctggtgcaggacttcgtaaagaggccgctactgactgtacgggagcacggggac
tgcaatgctgggagctgcctccacgccatctaggtctccctgggggacacccacgtccag
ctcagggactcaggagcagtactggtggacgggcaggatgtggtcttgccctggagcggc
cctgggggcctcagcgtctcccgggcctcttccactttcctgctgctgcgctggcctggg
gcccgcatcctctgaggagcgtctgaccctgcagcctacatcaccctggacacccgccat
gacctccaggtggcctggaaccagcaggctgacttcctgactcctgctggcaacatggag
accagcattgccgcctttgctagcaagttccaagtggcaggcgagggaaggtgcccctcg
gaggacagcgccccactttcccgctgcagcacccacactcagcgtcacattttcgtggag
gcagcctgtgccatcttgcatggcccagtcttccaggagtgccacgggctggtggacggg
gcacggttccacctgcgctgctcggcacctgtgtgtggctgcacccacggcggggactgc
ccgtgccccgtgctcgctgcctatgctcggtactgtgcccaggagggttccctgctttcc
tggagagaccagaccctctgccctgtcctgtgtcctggtggccaggagtaccaggagtgt
gccccagtgtgcggttggaactgtggggagactgaaggctgtggggagctgggcagctgt
gtggccggttgtaattgccccctggggctgctttgggaccctgagggccagtttgtgccc
cccggctcatgcccctgccagcttggggcccatcgctatgcccctggcagtgctaccatg
aagggctgcaaccgctgcatctgccaggagaggggcctgtggaattgcactgctcaacgc
tgcgccccaccgcgggaattctgcccccgtgggctcgtctgcgtccctggtgcctccctc
ctcacctgtgacagccccagtgtcaatggctcctgccccccaggcagcatgggaggctgt
gtctctcccccaggagccgtgctgctgggtgagggctgcacacctcccgagctctgtccc
tgctgtcacagtgggcagtggtacctgcccaacgctgcaatccaggaggactataacatt
tgggtgtgccggggtcggcagtggcgctgcatgggccagtggtgcgacggacggtgccag
gcatcaggtgccccccactatgtgacatttgatgggctggccctcaccttccccggggcc
tgcgagtatctgctggtgcgagaggccagcggccgtttcacggtctctgcctaggacctg
ccctgcggggcctgcggcatcacctgcaccaaggcgctgaccgtgcggctgcagagcacc
gttgtgcacatgctgagaggccaggcagtgacagtgaatggggtgagtgtatgccccccc
aaggtctacacgggctccgggctgagcctgcgccgtgctggcctcttcctgcagctcacc
acctgcctgggcctcaccctgctctgggatgggggtacccgggtcctggtgcagctgtcc
cccgagttccgcggccgggtggcggggctgtgtggagactttgatggagacgccagtaat
gaccttcggagacgccagggagtcctgctggagcccacggctgaactggctgcccactcc
tggtgcctcaatcctctctgccccgagccaggggagctgcggcacccctgcgccgtgaac
accccccgggccggctgggcccgcgcccgctgcggggtgatgcggcagccgctctttgcc
cggtgccatgcggaggagcccccagagcagcacttcgagtggtgtgtgcgtgacacccgc
agatgtgattcagggggcgactgtgagtgtctctgctcggccatcgccgcctacacagac
gagcgttgcgcacggcacgggatccacgtgcgctggcgcagccaggagctctgccctctg
cagtgtgaagggggccaggggtatgaggcctgtggccccnngtgcgtcccccccccaacc
tgccatgaccacggtcctgagcctgggtggcactgccaggccgttgcccgtgtggagggc
tgcttctgtcctgagggggctctgccgcactgaggagtccgcctcgagccggcttcctgc
ccctgcaagtggcgaggcagcttcttccccccgggcaccgtactgcagaaagactgtggc
aactgcacctgccagcaaagtcagtggctttctggggatgacggtagccgcggggaggag
ctggtgcctggctgtgcggagggagaggccccatgccaggagggcgggcactgtgtgccc
cacgggtggctttgtgaccaccaggatgactgtggcgatggctcagacgaggagggctgt
gccaccccaggccgtggggaggggcagatgtcttgcagctccggccactgcctgcccctg
gccctgatctgtgatgggcaggacgactgtggagacgggacggatgagcagggctgcccg
tgcccccaggactcgctggcctgcgctaacgggcgctgcctgccccctgccctgctctgc
gatgggccccctgactgtccggacgctgctgacgaggagtcctgttgggggcaagtgaac
tgcacccctggggaggtgtcctgcatcgatggtgcctgcgtggggaccatccacctgtgt
gatggaatctgggactgcccagatggagccaacgaggggccagggcactgcccgctcccc
tctctgcccactcccccggctggtaccttgcctggcccctctgctgtctccagggagact
gcacctactccccaattcagcgtcacgccgccctgcggcctcttcgcgagcggcggcggc
agcggcgagtgcgccccgcggggctggcgctgcgacggcgaggacggcgaagacggccgc
gaccggccctgcgcgccgcacctcccgccctgcgcccgcggcccgctctgtgtggccccc
gcgcagctgtgcgacggcgccgcacactgtccccacggctcggacggggaccccggcgcc
tgcgaggggctgccagtcccaggaggccccaacaggacagggcttcccggaccagaatac
tcctacccggatggcctctgcctcggtttccagctggtgtgcgctgggcagcctgactgt
gaattggcgggggaggcagggccctcctgggaagagcagtgctgtgaggcttggggcccc
tggagcccatgggcgctgtgcagccagacgtgcggccccggggtgcagggctgcagccgc
cgctgctccccgcccagtctcccggtgcggcggcactgcccgggccccaagcaccagact
caggcctgcgtcacggccacctgcccagtggacagtgaatggacctcctggtctccctgg
tccccgtgctctgagccatgcaggggcaccatggcccggcagcggcagtgccgcccaccc
cggaacgggggccacacctgtgccgtgctgcctggggaccctcccagcacccgccagacc
agaccctgccctcaggatggctgccccaatgtcacctgctccggggagctggtgttccat
ccctgtgccccttgccctttgatctgtgatgacatctctggtcaggccgagtgcccccct
gaccgccctgcagcagcccagcctcaccctgggccttccctaggctgctggcaccccaca
gggcaggtgctgggtgacaaggggcggtgtgtgaggccgtggcagtgcccctgcctggtg
gacagcacccactactggcgtgggcagcgcatcgaggccgactgccggctctgcatctgc
cgagatggacggccccggcgctgccggcccaacccaggctgtgccgtgaactgtggctgg
tcatcctggtctccctggaccgagtgcctgggcccctgtgggagccgcagcattcagtgg
tccttccagagcgccaacaatgtctgcctcgctggcccacagctactgcacccgccaggg
acctgcggggaccttgacctcacctccagctcccacttgggaagccgcttgtgctcaggg
tgcttccacgggcaccacggaccccagacaaggacccccacactctgtgcccctattagt
ctaaacaccaggactcccagcacatctttggggatccctggccttctcctgcatcagttt
tatgccctggaggtccaaaaacggggtgcagggggcccacaagtccaaggacgggtatgg
gccctctggtttgcaccttgtgcctctggaggtacctggggtgaggcttgtaggtccctc
tgggaccgctccactggcacagcttgcttccatacccctcgcttgggccagctgcagttt
cttgggttcggggtggggtcgggccgaggcccggcgagggtccgccgagtcggggatcgc
tggcgagagggcccctgcaggngctgccagtgtctgcacggcagcacgtcacgcagctcc
cactactgcccgctgggcagctgcccccagggctgggttctggtggagggagtgggagag
tcatgttgccactgtgtcctgcctggtgagtgggtctgcggggtagcagaggggccccaa
ggggaggagggtggtgaggactcagagggagccacaggtggcagcgccgagttgggggca
ccggctaccccagcctcagggagacaacccacggtccgccacatggcccctccagcccca
agcccccagatcggggcccctctgatcacctacattctgcctccccccagagatccctgc
tattctcccctgggcttggcccaactccccgaggggagcctgcatgctttgccccagcag
ctggagcgccccacctgggctgccatcctaaggcctcccacggaggcacctgggcagcag
ggctggagccccgtagaggaagcttatactcagtggcacgcccagcccccctacttgcag
ctggacctgctatggccctggaacctcactgggaccctgctccctgagctcctctgcagc
cccacgaccttcccagccgcgccccgagctgatgcctctcccaggtgggaccccggggga
gaagtgaatgtgcctaggctgagctgtcaatctctgtgtcccctgggcaagcagtggctg
gacagtgcacagggccctgcttcctgcnncccgagggggactgaccagccctcccaccct
ggctgctgctgcagagcactgaactcagggcgcgtggctctgctctgccagccccgtgac
cagcacatgaccccgggcgagtggcattcagagcacaggctcctgtggtcaccctggacc
ccatggagcgagtgcttggcctcctgtggccctgcccgacgccaccggcaccgcttctgc
accaggnaccccggcgttacaccatccagcttggcactgctgcccccactggcttcagcc
ccacctccttgcccaggccctgaggcagaggaggagccttgcctcctgctggggtgtgac
cgtgagtcctgtggaccaagcccccgccactcctgtgtgggcggcctccagagccggacc
ccaccccagggcctgggggattactgcgaggggcctcgggcccagggggccgcctgccag
gctctgccatgcccagtgaccaactgcaccgccatccaaggggccgagtacagcccctgt
ggccctccctgtccttgctcctgtgacgacctcgtgcactgggtttggcactgccagcca
ggcggttactacccgccgggccaggtgctgagtgccgacggcgctgtctgcgtgcagccc
agccactgcagctgcctgggcctgctgacccgggagcggcaccgtcccggcactcaactg
gcgaggcccgatggctgcaactgccgcacctgctccgagggcaggctgacctgcacagac
ctgcctcccaggtatgcaccctgctcctggggcccctgggaggacggcagtgtttcgtgt
agaggaggggagcagctgtgctcccggcgctgcgcccggccgccctgccccagaccgncc
cgcctgagccgcgtctgctgcacccaggcctgcagagaggcaggctgcccggccgggcgt
ctgtaccgggagtgccagcctggcgagggctgccccttctcctgcgcccacatcactcgg
caggtgggctgcttctctgctggctgtgaggagggctgtcactgtcccgaaggcaccttc
ctgcaccgtttggcctgtgtcccggttacaactcaccctgcctggagcccacgcctctcc
ccttccctgtcagctttcacctctgcagaccctgtggcctctgcagctttgcctggggcc
gctggatgctgctcctggggcccttgggggccctgcccctgcccgctggccgaggccgac
cccacctgcagtgggaccttcctccacctggtcacccaggcctgctccacagggccctgc
ctggaggagtgtgtgtggagcatctggacgcggtgctcatgccaggtgctggtccagcag
cgctaccgacaccagggcccagcacccggagggcccccccgcacacgactggacggccac
ttccggccttgcctcatcagcagctgctctgacagctgcgcacctccttctgagttccag
gcctgcggctccctccgcgctgggctctgtgccacacacctgccaccctgccagcctggc
tgctactgccccgagaggctgctggagcaggctggaggctgcgttccctcagagctgtgt
aactaccggcacatctcaggagaaggagctggggtgaccctggcccccggggaccacctg
cagctgggctgcaaagagtgtgagtaccagcgtggggagcagcagcgcaccagccggggc
tgtcaaggtcttctgcctctgagccgctggtccgagtggtcaccctgtgggccctgcnnc
tccaggactgccctagaggagcactggcccggggacccagctggcctctcctccacctcg
gtccccacgctggcttcagagcagcaccgctgccgcccctgtttggaccccgagacgggg
aggccatgggccggggatccagacctctgcactgtgccactcagccagcagcgtctctgc
ccagaccctggagcctgccaagatttatgccagtggagtccttggggggcctggagccgc
tgccagataccctgcagtggggggttccagctgcgctggnnaggaggctgccaggggcca
tgggctcagactgagagctgcaacatggggccttgcccaggagagagctgcgaggcccgg
gaccccgtgcccaccctggaccgtgccgaccactgcccgagaagctgtgccgacctctgg
gtccgcgtgcagtgtctgcagggacggtgccacacaggctgccgctgtccccctggccag
ctggtacaggatgggtgccatgtgcccatgtcttcttgctgctgtggcctccccagcccc
agtgcttcatgggtgctggctccggccgagngggggtggctggactgcaaaagctgcacc
tgtgttaacgggtccctggtgtgccgcccccatgagcgtccagccctcgggccttggtca
gcctggagcagctgcaaggaaggtcctgcgggggcaccgtgccaggcccaggacacggag
cagcggcaggaacgtaacctgcagccctgccccgagcgcccacctggccaggtgctcagc
ccccgtgcgacctcgtgcccgcgcctgtgctcgcacctgcagcctggcaccctctgcatg
caggagccctgccagcttggctgtgactgccctggagggcagctgctgcgctacggcacg
tgtgtgcgcccagctctgccctggggcctcagcttgacccctgaagagcagggccgggag
ctgcccccagggactctgctcacccagaactgcacccgctgtgtcggccaaggcggagcc
ttcagctgccccgtcgctggctgtcgggtgccccccccccgcggagaaatgtggcagcag
gtggcccccggggagctggggccctgtgagcagacgtgccgggagcccaacgccacggag
actcagggcagctgcagtgcggggcaggccccgggggcccctgcgtgcctgcagaccact
gcgagtggtggcaccacgggcgtccccacccggtgtgacaccacagccctccacgccccc
tag
DBGET
integrated database retrieval system
