Phocoena sinus (vaquita): 116760074
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Entry
116760074 CDS
T07759
Symbol
PPFIBP1
Name
(RefSeq) LOW QUALITY PROTEIN: liprin-beta-1
KO
K27096
liprin-beta
Organism
psiu
Phocoena sinus (vaquita)
Brite
KEGG Orthology (KO) [BR:
psiu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
psiu04131
]
116760074 (PPFIBP1)
Membrane trafficking [BR:
psiu04131
]
Exocytosis
Small GTPases and associated proteins
Rab associated proteins
116760074 (PPFIBP1)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SAM_1
SAM_2
DUF16
Crescentin
DUF4407
Motif
Other DBs
NCBI-GeneID:
116760074
NCBI-ProteinID:
XP_032500230
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Position
10:complement(80352107..80426620)
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AA seq
1011 aa
AA seq
DB search
MMSDASDMLAAALEQMDGIIAGSKALEYSNGIFDCQSPTSPFMGSLRALHLVEDLRGLLE
MMEADEKEGLRCQIPDSTVETLIEWLQSQMTNGHLPGNGDVYQERLARLENDKESLVLQV
SVLTDQVEAQGEKIRDLEFCLEEHREKLNATEEMLQQELLSRTSLETQKLDLMAEISTXS
XKLTAVEKDRLDYEDRFRDTEGLMQEIXDLRLRVTEMDNERLQNEKSLSLYQSLMAKLSS
MKIKVGQMQYEKQRMEQKWESLKEELASLKEQLEEKESEVKRLQEKLVCKMKGEGIEILD
RDIEVQKMKKAVESLMAANEEKDRKIEDLRQCLNRYKKMQDTVVLAQGQDGDFEDLLPSS
SFSTLLDAQGFSDLEKNLSSTPVMGSPSHDPFNTSAPEEFHTSILQVSIPSLLPASKGLE
TSEKVKLPPKPETSFEENDGKLILGSAVETQLCDSLSTSSLQKSSSLGNLKKESSDGEKE
SIPKTSEAKALVESSPFGSLPHKAPGHNASVDDNPFGTRKTRSSFGRGFFKIKSNKRTAS
APNLAETEKETPEHLDLAGVSSQPKDPQGSSPFQISPPSPDSKKKSRGIMRLFGKLRRSQ
STTFNPDDMSEPEFKRGGTRATAGPRLGWSRDLGQSNSDLDMPFAKWTKEQVCNWLVEQG
LGSYLNSGKRWIASGQTLLQASQQDLEKELGIKHLLHRKKLQLALQALGSEEETNHGKLD
FNWVTRWLDDIGLPQYKTQFDEGRVDGRMLHYMTVDDLLSLKVMSVLHHLSIKRAIQVLR
INNFEPNCLRRRPSDENSITPSEVQQWTNHRVMEWLRSVDLAEYAPNLRGSGVHGGLMVL
EPRFNVETMAQLLNIPPSKTLLRRHLATHFNLLIGAEAQHQKRDAMELPDYVLLTATAKV
KPKKLTFSNFGNLRKKKQEDGEEYVCPMELGQASGGTSKKGFKPGLDMHLYDEDDLDRLE
QMEDSEGTVRQIGAFSEGINNLTHMLKEDEMFKDFAARSPSASITDEDSNV
NT seq
3036 nt
NT seq
+upstream
nt +downstream
nt
atgatgagtgatgcaagtgacatgttggctgcggcgttggagcagatggacggtattata
gcaggttctaaggccctggaatattccaatgggatttttgattgccagtctcccacctcc
ccgttcatgggaagcttgcgagctctgcaccttgtggaagacctgcgcgggttgttagag
atgatggaagcggatgagaaggaaggcttgaggtgccagatcccagactccacggtggaa
acgctcatcgagtggctgcagagtcaaatgacaaatggacacctccctgggaatggagat
gtgtatcaagaaaggctggcacgtttagaaaatgataaagaatctctcgttcttcaggta
agtgtgttaacagaccaggtagaggctcagggagaaaagattcgcgatttggagttttgc
cttgaagagcacagagagaagttgaatgccacagaagaaatgctgcaacaggagcttctg
agcaggacatccttagaaactcagaagttggacctgatggctgaaatatctacttgaagt
taaaaactgacagctgtagagaaggacagattggattacgaagatagattcagagacaca
gaagggctaatgcaggagatcnatgatttgaggttaagagtcactgaaatggacaatgaa
agacttcagaatgaaaaaagcctgtctctctaccagtctttaatggccaaactttctagc
atgaaaatcaaggtgggtcagatgcagtatgaaaagcagcggatggaacaaaagtgggag
tccctgaaggaggaactggcatctctaaaagaacagctggaagagaaggaatctgaagta
aaaagactacaagaaaaattggtttgcaagatgaaaggagaagggattgaaattcttgat
cgagatattgaagtacaaaaaatgaaaaaggctgtggagtctttgatggcagcaaatgaa
gaaaaggatcggaaaatagaagatcttcgacagtgcctgaacaggtacaagaagatgcaa
gatacagtggtactggcccaaggccaagatggcgactttgaagacctgctcccttccagt
tccttctccactttgctggacgcacagggctttagcgatctggagaaaaacctgtcatct
acgccagtaatgggatctcccagtcatgacccatttaacacaagtgctccagaagagttc
cacaccagcatcttgcaagtttcaatcccttcattattgccagcatctaaaggcttggaa
acttctgaaaaagtgaaattacctcctaagccagagacttcatttgaggagaatgatggg
aaactaatccttggttctgctgttgaaactcaactatgcgatagtctttcaacttcaagt
ctgcaaaagtctagcagcctgggcaatctgaagaaagagtcatcagacggggaaaaggag
tctattccgaagacttcagaggctaaagctctggtagaaagtagcccatttgggagcctc
cctcacaaagctccgggacacaatgcctctgtggatgacaatccctttggcactcgaaaa
accagatcttcctttggtcgtggcttttttaaaatcaaaagtaacaagaggacagcaagt
gcgccaaacttggctgaaacagagaaggagacacctgagcacttagatctggctggtgtg
tcgtctcagccaaaagatccacaggggagcagtcccttccagatatcgccaccgtcgccg
gattccaaaaagaaatctaggggtatcatgagactctttggaaaactcaggagaagtcaa
tcaactacatttaacccagatgacatgtctgagcctgaattcaaaagaggagggacaagg
gcaactgcaggaccccgactgggttggtctcgagatttgggacaatctaacagtgacttg
gatatgccatttgccaagtggaccaaggaacaggtttgcaattggcttgtggaacagggc
ttggggtcctacctgaactctggcaagcgctggattgcatctggccaaacgcttttgcag
gcttctcagcaagatctagagaaggaacttggaatcaagcatttacttcatcgaaagaaa
ctccagctggcactgcaagccctgggatccgaagaagaaaccaatcatggaaagctggat
ttcaactgggtcactagatggttggatgatattggtctcccccaatacaagacccagttt
gatgaaggacgggtagatggtcgaatgcttcattacatgactgttgatgacttactgtct
ttgaaggtcatgagcgtgctccatcatctcagtatcaagagggccatccaggtcctgagg
atcaataactttgaaccaaactgtctgcggaggcgaccctctgacgagaatagcatcacc
ccgtcagaggttcagcagtggaccaatcatcgcgtgatggagtggctgcgctccgtggac
ttggcggaatatgcccccaatctcagaggcagtggtgtccatggtgggctcatggttcta
gaacctcgttttaatgtggaaacaatggctcagttactgaacatcccaccaagcaagacc
ctgctgcgaagacatttggccactcatttcaaccttctgatcggtgctgaggcccaacac
cagaaacgggatgccatggagttacccgattatgtacttttaacagctactgccaaagtg
aagccaaagaaacttaccttcagcaattttgggaatctgagaaagaagaaacaggaagat
ggggaggaatatgtttgtccaatggaattgggacaggcctcaggaggtacatctaagaaa
ggatttaagcctggtttggacatgcacctgtatgatgaggacgacttggaccggttagag
cagatggaagactcagaagggacagtgagacagataggcgccttctccgagggcatcaac
aatctaacccacatgttaaaggaagacgagatgtttaaagattttgctgcccgttccccc
agcgccagcatcaccgatgaagactcaaatgtctga
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