KEGG   Phocoena sinus (vaquita): 116760469
Entry
116760469         CDS       T07759                                 
Symbol
SMC1B
Name
(RefSeq) structural maintenance of chromosomes protein 1B isoform X1
  KO
K06636  structural maintenance of chromosome 1
Organism
psiu  Phocoena sinus (vaquita)
Pathway
psiu04110  Cell cycle
psiu04114  Oocyte meiosis
Brite
KEGG Orthology (KO) [BR:psiu00001]
 09140 Cellular Processes
  09143 Cell growth and death
   04110 Cell cycle
    116760469 (SMC1B)
   04114 Oocyte meiosis
    116760469 (SMC1B)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:psiu03036]
    116760469 (SMC1B)
Chromosome and associated proteins [BR:psiu03036]
 Eukaryotic type
  Sister chromatid cohesion proteins
   Cohesin complex
    116760469 (SMC1B)
  Meiosis-specific proteins
   Cohesin complex and associated proteins
    116760469 (SMC1B)
SSDB
Motif
Pfam: SMC_N SMC_hinge AAA_23 AAA_21 AAA_15 AAA_29 AAA_33
Other DBs
NCBI-GeneID: 116760469
NCBI-ProteinID: XP_032501240
Ensembl: ENSPSNG00000021868
LinkDB
Position
10:4349394..4436475
AA seq 1240 aa
MGHLELLLVENFKSWRGRQVIGPFRRFTCIIGPNGSGKSNVMDALSFVMGEKIANLRVKT
IQELIHGAHIGKPVSSSASVKIVYVEESGEEKTFARTIRGGCSEYCFNDSPVSRSAYITE
LEKIGIIVKARNCLVFQGTVESISLKKPKERTQFFEEISTSGELIGEYEEKKRKLQKAEE
DVQFHFNKKKNVAAERKYAKLEKEEAERYQSLLEELKINKIQLQLFQLYHNEKKISFLNS
ELERVNKDFSVAKESLSSHENIVKAKKKEHGMLSRQLQQTEKELKSLEALLNQKRPQYIK
AKENTSHHLKKLDVAKKSIKDSEKQCSKQEDDIKALETELVDLDGAWRSFEKQIEEEILR
KGRDIELEASQLDQYKELKEQVRKKVAIMTQQLEKLQWEQKADEERLAFEKRRHGEAQEN
LKQIKEQIEDHKKRIEKLEEYIKTCMNFLKEKKQQEETLVEEIEKTKSRMSEVNEELNLT
RSELQNAGIDTHEGKRQQKRAEVLEHLKRLHPDAVFGRLLDLCHPIHKKYQLAVTKLLGR
YMVAIVVASEKVAKDCIRYLKEERAEPETFLALDYLDIKPINERLREIKGCKMVIDVIKT
QFPQLKKVIQFVCGNGLVCETVEEARHIAFNGPERRKTVALDGTLFLKSGVISGGSSDLK
YKARCWDEKELKNLRDRRTQLIQELKDLMKTLRKEADLKQIQTLVQGTHTRLKYSQSELE
IIKKKHLAAFYQEQSQLQSELLNIESQCTMLSEGIKERQRRIEEFEGKIHKVEDDIFQHF
CEEIGVENIREFENRHVKRQQEIDQKRLEFEKQNTRLNVQLEYSRNQLKKKLNKINTLKE
TVQKGSEDIDNLKKAEENCLKIVDELMEKRQQLKDMVVTQNTNTEKVQAQIEEERKKFLA
VDREVGKWRKKVVILQTSLEQKRLEKHNMLLDCKVQDIEILLLLGSLDDIIEVELGPEAE
STQATMDIYEKEEAIEIDYSSLREDLKALESEKEIEAHLKLLRQQVASREDVLLRTAAPN
LRAPENLKTVRDKFQEYTDAFEASRKEARICRQEFEQVKKRRYNLFSQCFEHISVAIDQI
YKKLCRNNSAQAFLSPENPEEPYLEGISYNCVAPGKRFMPMDNLSGGEKCVAALALLFAV
HSFRPAPFFVLDEVDAALDNTNIGKVSSYIKEQTQEQFQMIIISLKEELYCKADALIGIY
PEHDDCMFSRVLTLDLSQYPDTEDRESSRRPVRTQNAPVA
NT seq 3723 nt   +upstreamnt  +downstreamnt
atgggccatttggagctgctgcttgtggagaactttaagtcgtggcggggccgccaggtc
ataggccccttcaggaggttcacctgcatcattggccccaacggctccggaaaatctaat
gtaatggatgcacttagttttgtaatgggagaaaaaatagctaatttaagagtgaaaact
attcaagaacttattcatggagcacatattggaaagcctgtttcttcttctgcaagtgta
aaaattgtatacgtggaagaaagtggagaagagaaaacatttgcaaggactatccgaggg
ggatgctcagaatattgttttaatgatagtcctgtgagtcgttctgcttatatcacagag
ttagaaaagataggcataatagtcaaagcacggaactgtctagtttttcagggaactgtg
gagtcaatttcactgaaaaaacccaaagaaagaacgcagttttttgaggaaatcagcact
tcaggagagcttataggagaatatgaggaaaagaaaagaaagttacagaaagccgaagaa
gatgtacagtttcattttaataagaaaaaaaatgtagctgcagagcgtaaatatgcaaaa
ttagagaaggaagaggcagaacgttaccagagtctccttgaagaactgaaaataaacaag
atacaactgcagcttttccagctgtatcacaatgagaaaaaaatttcttttctaaacagt
gagttagagcgtgtgaataaggattttagtgtcgcaaaagagtctctttctagtcatgaa
aacatagttaaagccaagaagaaggaacatggaatgttaagcagacaactgcaacaaaca
gaaaaagaattaaaatctcttgaagcacttttaaatcagaagaggcctcaatacattaaa
gctaaagaaaacacttctcaccacctcaagaagttagatgtggctaagaaatcaataaag
gacagtgaaaaacaatgttctaaacaggaagatgacataaaggccttagagacagagctg
gttgatttagatggtgcatggagaagttttgaaaagcagattgaggaagaaattttacgt
aaagggcgagacattgaactagaagccagtcagctggatcaatacaaagaacttaaggaa
caagtaagaaagaaagtggctataatgacccaacaattggaaaagctgcagtgggaacaa
aaggctgatgaagaaagactggcatttgaaaagaggaggcatggggaagctcaggaaaat
ctaaaacaaataaaagaacaaatagaagatcataaaaagcgaatagagaagttggaggag
tatataaaaacatgcatgaatttcttgaaagagaaaaaacagcaagaggaaaccctagtg
gaagaaattgaaaagacaaaatcaagaatgtctgaagttaacgaagagctgaatcttact
agaagtgaactgcagaatgctggaattgatacccatgagggaaaacgtcagcaaaagaga
gcagaggttctggaacaccttaaaagacttcacccagatgctgtgtttggaagactgctt
gacctgtgtcatcctatacataagaaataccagctggctgtcactaaacttcttggtcgg
tacatggttgccattgttgtagcctctgaaaaggtagcaaaagattgtattcgatatctg
aaggaggaaagagctgaacctgagacattccttgctttagattaccttgatatcaaacca
atcaatgaaagattacgggagattaaaggctgtaaaatggtgattgatgtcataaagact
cagtttcctcagctgaagaaagtaattcagtttgtctgtggaaatggccttgtctgtgag
actgtggaagaagcaaggcatattgccttcaatggacctgaaagacggaaaacagtagct
cttgatggaacgttatttttaaaatctggagtcatctctggagggtcaagtgacttaaaa
tacaaggctagatgctgggatgagaaagaattaaagaatttaagagacaggagaactcaa
ctaatccaagaattaaaggatttaatgaagacacttcgcaaggaagcagatttgaaacaa
atacagactctagtacaaggaactcatacacgactcaaatattcgcaaagtgaactagaa
ataatcaaaaagaagcaccttgctgctttttaccaggaacaatctcagctacaaagtgaa
ttgctaaatattgagtctcaatgtactatgttgagtgaaggaatcaaagaacggcaacga
agaattgaggaatttgaaggaaagatacataaggttgaagatgatatttttcaacacttc
tgtgaagaaattggtgtagaaaatattcgtgaatttgagaacagacatgttaaacggcaa
caagaaattgatcaaaaaagattagaatttgagaaacaaaatactcggcttaatgttcaa
cttgaatatagtcgcaatcagctgaagaaaaaactgaataagattaacacattaaaagaa
actgtccagaaaggtagtgaagacatcgataacctaaagaaggctgaagaaaattgtctg
aaaattgtggatgagctcatggagaaacggcagcaacttaaggacatggttgtcactcag
aataccaacactgagaaagtccaagctcaaattgaagaggaacggaagaagtttttggca
gttgatagggaagtgggaaaatggcgaaaaaaagttgtaatccttcaaacttctctggaa
cagaagcggttagagaaacataacatgttgcttgattgcaaagttcaagacattgaaata
cttcttttgttggggtcactggatgacatcattgaagtggagttgggacctgaagcagaa
agtacccaggcaacaatggatatatatgaaaaagaagaagccattgagatagactacagc
tctctaagagaggatttgaaggctctagaatctgaaaaagaaattgaggcccaccttaaa
ctcctacggcaacaagtagcatcccgggaagatgtcctgctgaggacagcggccccaaac
ctcagagccccggagaacctaaagactgtcagagacaagtttcaggagtacacagacgct
tttgaggccagcagaaaggaagccagaatatgtaggcaagagtttgaacaggtgaaaaaa
aggagatacaatcttttcagccaatgttttgagcacatctcagtcgcaattgatcagatc
tacaagaagctctgcagaaacaacagtgcccaagcatttcttagcccagaaaacccagaa
gagccttacttggagggaattagctataactgtgtggccccaggcaaacggttcatgcca
atggataatttgtcggggggagaaaagtgtgtggcagctttggctctcctgtttgctgtg
cacagttttcggcctgctccattctttgttttagatgaagtagatgcagccctggacaac
actaacattggcaaagtatcaagttatatcaaagagcagactcaggaacagtttcagatg
ataatcatttccctaaaagaggagctgtattgcaaagctgatgcactgataggcatctat
ccagagcatgatgactgcatgttcagccgagttttgaccctagatctgtctcagtatcca
gatactgaagacagagaaagcagcaggaggcccgttaggacgcagaatgcccctgtggcg
taa

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