Phocoena sinus (vaquita): 116760621
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Entry
116760621 CDS
T07759
Symbol
PDZRN4
Name
(RefSeq) PDZ domain-containing RING finger protein 4 isoform X1
KO
K15682
ligand of Numb protein X 3/4 [EC:
2.3.2.27
]
Organism
psiu
Phocoena sinus (vaquita)
Brite
KEGG Orthology (KO) [BR:
psiu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
psiu04121
]
116760621 (PDZRN4)
Enzymes [BR:
psiu01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
116760621 (PDZRN4)
Ubiquitin system [BR:
psiu04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Ligand of Numb proteins
116760621 (PDZRN4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PDZ
PDZ_6
PDZ_2
zf-C3HC4_2
zf-RING_UBOX
zf-C3HC4
zf-RING_2
zf-C3HC4_4
zf-C3HC4_3
zf-RING_5
Sina_ZnF
zf-rbx1
zf-RING_6
Prok-RING_4
Motif
Other DBs
NCBI-GeneID:
116760621
NCBI-ProteinID:
XP_032501653
Ensembl:
ENSPSNG00000020173
UniProt:
A0A8C9E9F3
LinkDB
All DBs
Position
10:complement(71452233..71826789)
Genome browser
AA seq
1030 aa
AA seq
DB search
MGFALERFAEAVDPDFQCRLCGQVLEEPLCTPCGHVFCARCLLPWAARRRRCPLQCQPLA
PGDLYRVLPLRSLVQKLRAQCDYRARGCGHSVGLRELAAHVERCDFGPARHRRRGCVSGP
CGRGGGDASARGGCGSAPRVRRGGTPGVRGGSGRAPGPQVLAWRRREKALLAQLWALQGE
VLLTARRYQKKFTQYMAHVRNFARDPGGGRGRDGEHKPFTIVLERENDTLGFNIIGGRPN
QDNQEETPMEGIYVSKILENGPADRADGLEIHDKIIEVNGKDLSKATHEEAVEAFRNAKE
PIVVQVLRRTPLSKPAYGTAPEVRLVNASTQTDITFEHIMALAKLRPPTPPVPDICPFLL
SDSCHSLHPMEHEFYEDDEYLSSLPADADRTEDFEYEEVELCRVNSQEKLGLTVCYRTDD
EEDTGIYVSEVDPNSIAAKDGRIREGDRILQINGEDAQDREAAVALLSSDECRRIVLLVA
RPESQLEEGWLEDERNEYLEELNSSMLEEQHNEAMQRTASQVEQPKKQEEEEGTTDTATS
SSNNHEKDSGVGRTDESLRNDESSEQENAAEDPNGTSLKSKRELGQSQDTLGSTELQCNE
SFVSGEYIDSDCTGNQDEECEKFRQLLELKCKIQKHGEYDLYYSSSTIECNQGGREGVEH
ELQLLNEELRNIELECQNIMQAHRIRKVTDQYGDIWALHEGGFRNYNTSIDTQRGKLDDI
LEHPEKSDKESSSAYNTAESCRSTPLTVDRSPDSSLPRVINLTNKKNLRSTMAANQSSSG
QSSKESTKAKTTEQGCGIEGKEKTSESSKLSDPEKTSGEHIPYLSPYHSSSYRYANIPAH
ARHYQSYMQLIQQKSAVEYAQSQLSLVSVCKESQKCSEPKMEWKVKIRSDGTRYITKRPV
RDRILKERALKIKEERSGMTTDDDTMSEMKMGRYWSKEERKQHLVRAKEQRRRREFMMRS
RLECLKESPQSGSESKKEVNIIELSHKKMMKKRNKKILDNWMTIQELMTHGAKSPDGTQV
PNAFLSVTAV
NT seq
3093 nt
NT seq
+upstream
nt +downstream
nt
atgggctttgccctggagcgcttcgccgaagcggtggacccggatttccagtgcaggctg
tgcggccaggtgctggaggagcccctgtgcacgccgtgcgggcacgtcttctgcgcccgc
tgcctgctgccctgggcggcgcggaggcgccggtgcccgctgcagtgccagcccctggcg
ccgggcgatctgtaccgggtgctgcctctgcgcagcctcgtccagaagctgcgcgcccag
tgcgactaccgcgcccgcggctgcggccactcggtcgggctgcgcgagttggcggcgcac
gtcgagcgctgcgacttcggccctgcccgccaccgccgccggggctgcgtctccgggccg
tgcggccggggcggcggggacgcgtccgcgcgggggggctgcggctcagcgcccagggtc
cgccgcggcgggacgccgggagtccgtggcggcagcgggcgggcgccagggcctcaagtc
ctggcctggaggcggcgcgagaaggcgctgctggcgcagctctgggcgctgcagggggag
gtgctgctcacggcccgcaggtaccagaagaagttcacccagtacatggctcacgtccgc
aacttcgccagggacccgggcggcggccgcggccgggatggagagcataagccattcact
attgtgttagaaagagaaaatgacactttgggattcaatattataggaggtcgaccaaat
caggataatcaagaagaaacaccaatggaaggaatttatgtttcaaagattttggaaaat
ggacctgctgatagagcagatggcttggagattcatgacaaaatcattgaggtcaatggg
aaggatctctcaaaggccacccatgaagaggcagtggaagcttttcgaaatgccaaggag
cccattgtggtccaggtgctaaggcgaacacctctcagtaaaccagcctatgggacggcc
ccagaagtgcggctcgtgaatgccagcacccagacggacatcacctttgaacatatcatg
gccctggccaaacttaggccacccacccctccagtgcccgacatctgtccatttctgctc
tcagacagctgccattctcttcatccgatggaacatgaattttatgaggacgatgagtat
ctttccagcttgcctgctgatgcagacagaactgaggactttgaatatgaggaggtcgag
ttgtgtcgtgttaacagtcaagaaaagctgggcctgacagtctgttaccgaacggatgat
gaagaagacaccggcatttatgtcagcgaggtagatccaaacagcattgctgccaaagat
ggccggattcgagaaggggatcgtattttgcaaataaatggggaagacgcccaggatcga
gaggcggcggtggccctgctatctagtgatgagtgccggagaatcgtgctgctggtcgca
aggccggagagtcagctggaggaaggctggctagaagatgaaaggaatgaatatttagag
gagttaaactcgtcgatgttggaggaacagcataatgaagcaatgcagcgcactgccagt
caggtggagcagccaaaaaaacaagaagaagaagaaggcacaacagacacggcaacatcc
tcatccaacaaccatgagaaggacagtggagtggggcgcacagatgaaagcttgcggaac
gacgagagctcagagcaggagaatgcagccgaggatcccaatggcacatctttgaagagc
aagagagagctggggcagagccaagacactctgggaagcactgaacttcagtgtaatgag
agcttcgtgtctggtgaatacattgactcagactgtactggcaaccaagatgaggagtgc
gaaaagtttcggcagctcttggagctcaaatgcaagattcagaagcatggagagtatgac
ctgtattactcaagcagcacaatagaatgcaatcaagggggacgagagggagtggagcac
gaactacagttgcttaatgaagaactaagaaacattgaacttgagtgccaaaatatcatg
caggctcacaggatccggaaagtgacagaccagtatggagacatctgggcactacatgag
ggaggattccgaaattataacaccagcatagatacgcagaggggaaaactagatgacatc
cttgaacacccagaaaagtcagataaagagagttctagtgcttacaacacagctgaaagc
tgcagaagcactccactcactgtggaccgttcccctgacagttccctcccaagagtgatc
aacctcaccaataagaaaaacctgagaagcacaatggcagccaatcagtcctcttctgga
cagagtagtaaagagtcaaccaaagccaaaaccactgaacaaggttgtggcattgaaggc
aaagagaagacttcagaaagcagcaagctttctgatccagagaagaccagtggtgaacac
atcccttacctctctccttaccacagctcctcctatagatatgcaaacatcccagcacat
gcccggcattatcaaagttacatgcagttaattcaacagaagtctgcagtcgagtacgct
cagagccagctcagcttggtgagcgtgtgcaaggagtctcagaagtgctcggaacccaag
atggaatggaaggtgaaaatcaggagtgacgggacacggtacatcaccaagagacccgtg
agggaccgcattctgaaggagcgtgccttaaagatcaaggaggagcggagtggcatgacg
acggacgatgacaccatgagtgagatgaaaatggggcgctactggagcaaagaggagagg
aagcaacacctggtgcgggccaaagagcagcggcgccgccgagagttcatgatgcggagc
cggttggagtgtctcaaggagagtccccagagcggcagcgagagcaagaaggaggtcaac
atcattgaactgagtcacaaaaagatgatgaagaagagaaacaagaaaattttggacaac
tggatgacaatccaagaactgatgacccatggggccaagtcccctgatggcacacaagtt
cctaatgcctttctgtcagtcaccgcggtatga
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