Phocoena sinus (vaquita): 116760775
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Entry
116760775 CDS
T07759
Symbol
CALCOCO1
Name
(RefSeq) LOW QUALITY PROTEIN: calcium-binding and coiled-coil domain-containing protein 1
KO
K25828
calcium-binding and coiled-coil domain-containing protein 1
Organism
psiu
Phocoena sinus (vaquita)
Brite
KEGG Orthology (KO) [BR:
psiu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
psiu03021
]
116760775 (CALCOCO1)
04131 Membrane trafficking [BR:
psiu04131
]
116760775 (CALCOCO1)
Transcription machinery [BR:
psiu03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
Others
116760775 (CALCOCO1)
Membrane trafficking [BR:
psiu04131
]
Autophagy
ER-phagy
ER-phagy recepters
116760775 (CALCOCO1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CALCOCO1
SKICH
Zn-C2H2_12
ACBP4_C
Vps23_core
Fez1
DUF724
zf-Tbcl_FmdE
Motif
Other DBs
NCBI-GeneID:
116760775
NCBI-ProteinID:
XP_032502036
Ensembl:
ENSPSNG00000004212
LinkDB
All DBs
Position
10:60891414..60906637
Genome browser
AA seq
692 aa
AA seq
DB search
MEESSLSRAPSRGGVNFLNVARTYIPNTKVECHYTLPPGTVPSASDWIGIFKVEAACVRD
YHTFVWSSVPESATDGSPIHASVQFQASYLPKPGAQLYQFRYVNRQGRVCGQSPPFQFRE
PRPMDELVTLEETDGGSDILLVVPKATVLQNQLDESQQERNDLMQLKLQLEGQVTELRSR
VQELETALASARQEHMALEEQYKGLSRSHGELTEERDILSRQQGDHVARILELEDDIQTI
SEKVLTKEVELDRVRDTVKALTREQEKLLGQLKEVQADKEQSEAELQVAQQENCRLSLEL
QEARGRQEEQSAQAQRLKDXMAQMKDTLGQAQQRVAELEPLKEQLRGAQELAASSQQKAA
LLGEELASAAGARDRTIAELHRSRLEVAGVNGRLAELSLHLKEEKSQWSKERAGLLQSVE
AEKDKILKLSAEVLRLEKAVQEEKTQNQVFKTELAQEKDSSLVQLSESRRELVELRSALR
VLQKEKEQLQEEKQELLEYMRKLEARLEKVADEKWNEDPATEDEEAAAGLRCPVALTDSE
DESPEDMRLPPYGLCERGDLGSSPATGPREASPLVVISQPAPIAPHLSGPAEDSSSDSEA
EDEKSVLMAAVQSGGEEANLLLPELGNAFYDMASGFAAGPLSEASTGGPTTPPWKECPIC
KERFPAESDKDALEDHVDGHFFFSTQDPFTFE
NT seq
2079 nt
NT seq
+upstream
nt +downstream
nt
atggaagaatcatcgctaagccgggcaccatcccggggtggagtcaactttctgaatgtg
gcccggacctacatccccaacaccaaggtggagtgtcactacacgctcccaccaggcact
gtgcccagtgccagcgactggattggcatcttcaaggtggaggctgcctgtgtccgggat
taccacacgtttgtgtggtcttcggtgcctgaaagtgcaactgatggttcccccatccat
gccagtgtccagttccaagccagctacctgcccaaacccggagcccagctctaccagttc
cggtacgtgaaccgccagggccgggtgtgtgggcagagcccccctttccagttccgagag
ccacggcccatggatgaactggtgaccctggaggagactgacggcggctctgacatcctg
ctggttgttcccaaggcaactgtgctgcagaaccagctggacgagagccagcaagagagg
aatgacctgatgcagctgaagctgcagctggaggggcaggtgacagagctgaggagccga
gtacaggagcttgagacggctctggcgtccgccaggcaggagcacatggcactggaggag
cagtacaaggggctttcccggtcccacggggagctcacggaagagagggacatcctgagc
cggcaacagggagaccacgtggcccgcatcctggagctggaagatgacatccagactatc
agtgagaaggtgctgacgaaagaggtggagctggacagggttagagacacggtgaaggcc
ctgactcgggaacaagagaagctccttgggcagctgaaggaagtgcaggcagacaaggag
caaagcgaggctgagctccaggtggcacagcaggagaactgtcgcttgagtttggagctg
caggaggccaggggccggcaggaggagcagagtgctcaggcccagcgactgaaggacnag
atggcccagatgaaggacaccctcggccaggcccagcagcgggtggctgagctggagccc
ctgaaggagcagcttcgaggggcccaggagcttgcagcctcgagccagcagaaagccgcc
cttcttggggaggagctggccagcgcagcgggagccagggaccgcaccatagccgagctg
caccgcagccgcctggaagtggctggagtcaacggcaggctggctgagctcagtctgcac
ttgaaggaggagaaaagccagtggagcaaggagcgggcggggctgctgcagagtgtggag
gccgagaaggacaagatcctaaagctgagtgcagaggtacttcgactggaaaaggcagta
caggaggagaagacccagaaccaagtgttcaagactgagctggcccaggaaaaggattct
agcctggtgcagttgtcagagagtaggcgggagctggtggagctgcggtcagccctgcgt
gtgctccagaaggaaaaggagcagctccaggaggagaagcaggaactgctagagtacatg
agaaagctggaggcccgcctggagaaggtggcagacgagaagtggaatgaggaccctgcc
acagaggacgaggaggccgctgcggggctgcgctgcccagtggctctgacagactcagag
gatgagtctccagaagacatgaggctcccgccctatggtctgtgtgagcgtggagacctg
ggctcctcccctgccacagggccacgagaggcttctcccctagttgtcatcagccagccg
gctcccatcgctcctcacctctcaggaccagctgaggacagtagctctgactctgaggct
gaagatgagaagtcagtcctgatggcagctgtgcagagtggtggtgaggaggccaacctg
ctacttccggaactgggcaatgccttctatgacatggccagtggctttgcggcgggtccc
ttgtcagaggccagcactgggggccctaccacccccccatggaaggagtgtcctatttgt
aaggaacgcttcccagccgagagcgataaggatgccctggaggaccacgtggatggacac
ttctttttcagcacccaggaccccttcacctttgaatga
DBGET
integrated database retrieval system
