Phocoena sinus (vaquita): 116760999 Help Entry 116760999         CDS       T07759                                  Symbol COL2A1 Name (RefSeq) collagen alpha-1(II) chain   KO K19719   collagen type II alpha Organism psiu  Phocoena sinus (vaquita) Pathway psiu04151   PI3K-Akt signaling pathway psiu04510   Focal adhesion psiu04512   ECM-receptor interaction psiu04518   Integrin signaling psiu04974   Protein digestion and absorption psiu05165   Human papillomavirus infection Brite KEGG Orthology (KO) [BR:psiu00001]  09130 Environmental Information Processing   09132 Signal transduction    04151 PI3K-Akt signaling pathway     116760999 (COL2A1)   09133 Signaling molecules and interaction    04512 ECM-receptor interaction     116760999 (COL2A1)    04518 Integrin signaling     116760999 (COL2A1)  09140 Cellular Processes   09144 Cellular community - eukaryotes    04510 Focal adhesion     116760999 (COL2A1)  09150 Organismal Systems   09154 Digestive system    04974 Protein digestion and absorption     116760999 (COL2A1)  09160 Human Diseases   09172 Infectious disease: viral    05165 Human papillomavirus infection     116760999 (COL2A1)  09180 Brite Hierarchies   09183 Protein families: signaling and cellular processes    00536 Glycosaminoglycan binding proteins [BR:psiu00536]     116760999 (COL2A1) Glycosaminoglycan binding proteins [BR:psiu00536]  Heparan sulfate / Heparin   Extracellular matrix molecules    116760999 (COL2A1) SSDB OrthologParalogGFIT Motif Pfam:  Collagen COLFI VWC VWC2L_2nd Motif Other DBs NCBI-GeneID:  116760999 NCBI-ProteinID:  XP_032502536 Ensembl:  ENSPSNG00000014320 UniProt:  A0A8C9CHE9 LinkDB All DBs Position 10:65304194..65335005 Genome browser AA seq 1487 aa AA seqDB search MIRLGAPQTLVLLTLLVAAVLRCHGQDVQKAGSCVQDGQRYNDKDVWKPEPCRICVCDTG TVLCDDIICEDMKDCLSPETPFGECCPVCSTDLTTASGQPGPKGQKGEPGDIKDIVGPKG PPGPQGPAGEQGPRGDRGDKGEKGAPGPRGRDGEPGTPGNPGPPGPPGPPGPPGLGGNFA AQMAGGFDEKAGGAQMGVMQGPMGPMGPRGPPGPAGAPGPQGFQGNPGEPGEPGVAGPMG PRGPSGPPGKPGDDGEAGKAGKPGERGLPGPQGARGFPGTPGLPGVKGHRGYPGLDGAKG EAGAPGVKGESGSPGENGSPGPMGPRGLPGERGRTGPAGSAGARGNDGQPGPAGPPGPVG PAGGPGFPGAPGAKGEAGPTGARGPEGAQGPRGEAGTPGSPGPAGASGNPGSDGIPGAKG SAGAPGIAGAPGFPGPRGPPGPQGATGPLGPKGQTGEPGIAGFKGEQGPKGEPGPTGPQG APGPAGEEGKRGARGEPGGAGPAGPPGERGAPGNRGFPGQDGLAGPKGAPGERGPSGLAG PKGANGDPGRPGEPGLPGARGLTGRPGDAGPQGKVGPSGAAGEDGRPGPPGPQGTRGQPG VMGFPGPKGANGEPGKAGEKGLPGAPGLRGLPGKDGETGAAGPPGPAGPAGERGEQGAPG PSGFQGLPGPPGPPGEGGKPGDQGVPGEAGAPGLVGPRGERGFPGERGSPGSQGLQGPRG LPGTPGTDGPKGAAGPGGPPGAQGPPGLQGMPGERGAAGIAGPKGDRGDVGEKGPEGAPG KDGGRGLTGPIGPPGPAGANGEKGEVGPPGPSGTAGARGAPGERGETGPPGPAGFAGPPG ADGQPGAKGEQGEAGQKGDAGAPGPQGPSGAPGPQGPTGVTGPKGARGAQGPPGATGFPG AAGRVGPPGSNGNPGPPGPPGPSGKDGPKGARGDSGPPGRAGDPGLQGPSGPPGEKGEPG DDGPSGPDGPPGPQGLAGQRGIVGLPGQRGERGFPGLPGPSGEPGKQGAPGASGDRGPPG PVGPPGLTGPAGEPGREGSPGADGPPGRDGAAGVKGDRGETGPLGAPGAPGPPGSPGPAG PVGKQGDRGEAGAQGPMGPSGPAGARGMPGPQGPRGDKGETGEAGERGLKGHRGFTGLQG LPGPPGPAGDQGTSGPAGPSGPRGPPGPVGPSGKDGANGIPGPIGPPGPRGRSGETGPAG PPGNPGPPGPPGPPGPGIDMSAFAGLGQREKGPDPLQYMRADEAAGNLRQHDAEVDATLK SLNNQIESIRSPEGSRKNPARTCRDLKLCHPEWKSGDYWIDPNQGCTLDAMKVFCNMDTG ETCVYPSPASVPKKNWWNSKSKDKKHIWFGETINGGFHFSYGDDNLAPNTANVQMTFLRL LSTEGSQNITYHCKNSIAYLDEAAGNLKKALLIQGSNDVEIRAEGNSRFTYTVLKDGCTK HTGKWGKTMIEYRSQKTSRLPIIDIAPMDIGGPEQEFGVDIGPVCFL NT seq 4464 nt NT seq  +upstreamnt  +downstreamnt atgatccgcctcggggctccccagacgctggtgctgctgacgctgctcgtcgccgctgtc cttcggtgtcacggccaggatgtccagaaggctggcagctgtgtgcaggacgggcagagg tataacgataaggatgtgtggaagcccgagccctgccggatctgtgtctgtgacactggg actgtcctctgcgacgacataatctgtgaagacatgaaagactgcctcagccccgagact cccttcggagagtgctgccccgtctgctcaactgacctcaccactgccagtgggcaacca ggaccaaagggacagaaaggagaacctggagacatcaaggatattgtaggacccaaagga cctcctgggcctcagggacctgcaggtgaacaaggacccagaggtgatcgtggtgacaaa ggtgaaaaaggtgctcctggacctcgtggcagagatggagagcctgggacccctggaaac cctggcccccctggccctcctggcccccctggcccccctggtcttggtggaaactttgct gctcagatggctggaggatttgatgagaaggctggtggcgcccagatgggagtaatgcag ggaccaatgggccccatgggacctcggggacctccaggccctgctggtgctcccggacct caaggatttcaaggcaaccctggtgaacctggggaacccggcgttgctggtcccatgggt ccccgtggcccttctggcccccctggaaaacctggtgacgacggtgaagctggaaaggct ggaaaacctggcgagagaggccttcctggtcctcagggtgctcgcggcttcccaggaacc ccaggccttcctggtgtcaaaggtcacagaggttacccaggtctagatggtgctaaggga gaagctggtgctccaggtgtgaagggtgagagtggttccccaggagagaacggttctccg ggcccaatgggtccccgtggcctgcctggtgagagaggacggactggccctgctggctct gcgggtgctcggggcaacgatggccaacccggccccgcagggcctccgggtcctgtgggt cctgctggcggtcctggcttccccggtgctcctggtgccaagggtgaagctggccccacc ggtgctcgaggtcctgaaggtgcgcaaggtcctcgcggtgaagctggtactcctgggtcc cccgggccggctggtgcctctggtaaccctggatctgatggaattcctggagctaaagga tctgctggtgcccccggcattgctggtgctcccggcttccctgggccccgtggtccaccc ggccctcaaggtgcaactggtcctctgggcccgaaaggtcaaacgggtgagcctggtatt gccggcttcaaaggcgaacaaggccccaagggagaaccgggccctactggtccccaagga gcccccggtcctgctggtgaagaaggcaagagaggggcccgtggagagcctggtggtgct gggcccgctgggccccctggagaaagaggtgctcctggcaaccgtgggttcccaggtcag gatggtctggcaggtcccaagggagcccctggagagcgagggcccagtggtcttgctggt cccaagggagccaatggtgaccctggtcgtcctggagagcctggcctccctggagcccgg ggtctcactggtcgccctggtgatgctggtcctcaaggcaaagttggtccttctggagcc gctggtgaagatggtcgccctggacctccaggtcctcaggggactcgtgggcagcctggt gtcatgggtttccctggccccaaaggtgccaatggtgagcctggcaaagctggtgagaaa ggactgcctggtgctcctggtctgagaggtctccctggcaaagatggtgagacaggagct gcaggcccccctggccctgctggacctgccggtgaacgaggcgagcagggtgctcctggg ccatctgggttccagggacttcctggcccgcccggtcccccaggtgaaggtggaaaacca ggtgaccagggcgttcctggtgaagctggagctcccggcctcgtgggtcccaggggtgaa cgaggtttcccaggggaacgtggctctcccgggtcccagggcctccaggggccccgcggc ctccctggtactcctggcactgatggtcccaaaggcgcagctggcccaggtggcccccct ggggctcagggccctccaggtctgcaggggatgcccggtgagagaggagcagctggcatc gctgggcccaagggagacaggggtgatgttggtgagaaaggccccgagggagcccccggg aaggacggtggacggggtctgactggccccattggcccccctggcccggctggtgccaac ggtgagaagggcgaagttggacctcctggtccttcaggaactgctggtgctcgcggtgcc ccgggtgaacgtggagagactggaccccccgggcccgctggatttgccggtcctcctggt gctgacggccagcccggtgccaaaggcgagcaaggagaggctggccagaaaggtgacgcc ggtgccccgggtcctcagggcccctctggagctcccgggcctcagggtcctactggtgtg actggtcctaaaggagcccgaggtgctcaaggccccccgggagccaccggattccccgga gctgcaggccgcgtcggaccgccaggttccaatggcaaccctggaccccccggcccccct ggtccttctggaaaagatggtcccaaaggtgctcgaggagacagcggcccccctggccga gctggtgaccctggcctccaaggtccttccggaccccctggcgagaagggagagcctgga gatgacggtccttctggtcccgacggtcctccaggtccccagggcctggctggtcagagg ggcatcgttggtctgccagggcagcgtggtgagcgaggattccccggcctgcccggccca tcgggtgagcctggcaagcagggagctcctggagcatctggagaccgaggtccccctggc cccgtgggtcctcctggcctgactggtcctgcgggtgaacctggacgcgagggaagccct ggtgctgacggcccccctggcagagacggtgcagctggagtcaagggtgatcgtggcgag accggtcccttgggtgcccccggagccccagggccccctggctctcctggccccgccggc ccagtcggcaagcagggagaccgaggagaagctggtgcacaaggccccatgggaccctca ggaccagctggagcccggggaatgccaggccctcaaggcccccgaggtgacaaaggagaa acgggagaggctggcgagaggggactgaagggacaccgtggcttcactggtctgcagggt ctgcccggcccccctggtcccgctggagaccaagggacttctggtcctgccggcccttct ggccccagaggtcctcctggccccgtcggtccctctggcaaagatggcgctaatggaatc cccggccccattggacctcctggaccccgtggacgttcaggcgaaactggccctgctggt cctcctggaaatcctggaccccctggccctccaggtccccctggccctggcattgacatg tccgcctttgctggcctaggccagagagagaagggcccagaccccctgcagtacatgcgg gccgatgaagcagccggcaacctgagacagcacgacgccgaggtggacgccacactcaag tccctcaacaaccagatcgagagcatccgcagccccgaggggtcccgcaagaaccccgct cgcacctgccgggacctgaaactctgccaccctgagtggaagagcggagattactggatc gacccgaaccagggctgcaccctggacgccatgaaggttttctgcaacatggacactggc gagacctgcgtctaccccagcccagccagcgttcccaagaagaactggtggaacagcaag agcaaggacaagaaacacatctggtttggagaaaccatcaacggtggcttccacttcagc tatggagatgacaacctggctcccaacaccgccaacgtccagatgaccttcctgcgcctg ctgtccaccgagggctcccagaacatcacctaccactgcaagaacagcattgcctacctg gacgaagccgctggcaacctcaagaaggccctgctcatccagggctccaatgacgtggag atccgggccgagggcaacagcaggttcacatatacggttctgaaggatggctgcacgaaa cacaccggtaagtggggcaagactatgatcgagtaccggtcgcagaagacctcacgcctc cccatcattgacattgcacccatggacataggagggcccgagcaggaattcggtgtggac atagggcctgtctgcttcttgtaa

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