KEGG   Phocoena sinus (vaquita): 116761518
Entry
116761518         CDS       T07759                                 
Symbol
WDTC1
Name
(RefSeq) WD and tetratricopeptide repeats protein 1 isoform X1
  KO
K11807  WD and tetratricopeptide repeats protein 1
Organism
psiu  Phocoena sinus (vaquita)
Brite
KEGG Orthology (KO) [BR:psiu00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:psiu04121]
    116761518 (WDTC1)
Ubiquitin system [BR:psiu04121]
 Ubiquitin ligases (E3)
  Multi subunit type E3
   Cul4 complex
    Target recognizing subunit (DCAF)
     116761518 (WDTC1)
SSDB
Motif
Pfam: WD40 WD40_Prp19 WD40_CDC20-Fz WD40_WDHD1_1st Beta-prop_TEP1_2nd Beta-prop_CAF1B_HIR1 Beta-prop_EML_2 EIF3I WDR55 TPR_19 Beta-prop_WDR75_1st WD40_MABP1-WDR62_2nd Beta-prop_EML TPR_1 TPR_2 TPR_17 ANAPC4_WD40 Beta-prop_HPS5 Beta-prop_WDR90_POC16_2nd TPR_11 Beta-prop_SPT8 TPR_16 ANAPC3 WD40_RFWD3 TPR_14 Beta-prop_EIPR1 Beta-prop_WDR35_TULP_N TPR_6 NBCH_WD40 Beta-prop_WDR19_1st Beta-prop_IFT122_1st Barstar
Other DBs
NCBI-GeneID: 116761518
NCBI-ProteinID: XP_032503219
Ensembl: ENSPSNG00000003225
LinkDB
Position
1:21400320..21471971
AA seq 680 aa
MAKVNITRDLICRQIKERGALSFERRYHVTDPFIRRLGLEAELQGHSGCVNCLEWNEKGD
LLASGSDDQHTIVWDPLHHKKLLSMHTGHTANIFSVKQFLPHAGDRILITGAADSKVHVH
DLTVKETIHMFGDHTNRVKRIATAPMWPNTFWSAAEDGLIRQYDLRENSKHSEVLIDLTE
YCGQLVEAKCLTVNPQDNNCLAVGASGPFVRLYDIRMIHNHRKSMKQSPSAGVHTFCDRQ
KPLPDGAAQYYVAGHLPVKLPDYNNRLRVLVATYVTFSPNGTELLVNMGGEQVYLFDLTY
KQRPYTFLLPRKCHSSGEVQNGKMSTNGVSNGVSNGLHLHSNGFRLPESRGHVSPQVELP
PYLERVKQQANEAFACQQWTQAIQLYSKAVQRAPHNAMLYGNRAAAYMKRKWDGDHYDAL
RDCLKAISLNPCHLKAHFRLARCLFELKYVAEALECLDDFKGKFPEQAHSSACDALGRDI
TAALFSKNDGDEKKGAGGGGSGPVRLRSTSRKDSISEDEMVLRERSYDYQFRYCGHCNTT
TDIKEANFFGSNAQYIVSGSDDGSFFIWEKETTNLVRVLQGDESIVNCLQPHPSYCFLAT
SGIDPVVRLWNPRPESEDLTGRVVEDMEGASQANQRRMNADPLEVMLLNMGYRITGLSSA
GAGASDDEDSSEGQVQCRPS
NT seq 2043 nt   +upstreamnt  +downstreamnt
atggcaaaagtcaacataactagagacctcatctgtaggcagataaaggagcggggtgcc
ctgagctttgagcggcgctaccatgtcactgacccctttatcagacggctgggcctggaa
gcagagctgcagggtcactcaggatgtgtcaactgtctggagtggaatgagaaaggagac
ttgctggcctctggttctgatgaccagcacacgattgtgtgggacccgctgcaccataag
aagctgctttccatgcacacaggacacactgcaaatatcttttctgtcaagcagttcctg
cctcacgctggggaccgcatcttgatcacaggggcagctgactccaaggtgcatgtccac
gacctgacagtaaaggagacgatccacatgtttggagaccacacaaaccgggtgaaacgc
atcgccacggcgcccatgtggcccaacacattctggagcgctgctgaggatgggcttatc
cgccagtatgaccttcgggagaacagcaaacactcggaggtgctgattgacctgacagag
tactgtggccagctggtagaggccaagtgcctcaccgtcaacccccaggacaacaactgc
ctggcagtgggggccagcgggccctttgtgaggctctatgacattcgcatgatccataac
cacagaaagagcatgaagcagagcccttcagcaggtgtgcacaccttctgtgaccggcag
aagccccttccggatggtgcagcccagtattacgtagcaggtcacctgccagtgaagctg
cccgactacaacaaccgtctgagagtgctggtcgccacctatgtgaccttcagccccaat
ggcacggagctgctggtcaacatgggaggagagcaggtctatttgtttgacctgacttac
aagcagcggccgtacaccttcctcttgcctagaaaatgccactcctcaggggaagttcag
aatggcaagatgtccaccaatggtgtgtccaacggtgtgtccaatggcctgcaccttcac
agcaacggcttccggctgccagagagtagaggacatgtcagcccccaggtagagctgccc
ccatacctggagcgtgtgaaacagcaagccaatgaggcttttgcctgccagcagtggacc
caggccatccagctttacagcaaggccgtgcagagggcccctcacaacgccatgctctac
gggaaccgagctgctgcctacatgaagcgcaagtgggatggtgaccactacgatgctctg
agggactgcctcaaggccatctccctaaacccatgccatctgaaggcgcacttccgcctg
gcccgatgcctctttgagctcaagtacgtggctgaggccctggagtgcctggatgatttc
aaagggaagttcccggagcaggcccatagcagcgcttgtgatgcactgggacgcgacatc
acggccgccctcttctccaaaaatgatggtgacgagaagaagggagctggtggtggtggc
agcggccccgtccgcctccgcagcacgagccgcaaggactccatctcagaggacgagatg
gtgctgcgggagcgaagctacgactatcagttccgctactgtggccactgcaataccacc
acagacatcaaggaggccaatttctttggcagcaacgctcaatacatcgtcagtggctct
gatgatggctccttcttcatctgggaaaaggagaccaccaacctggtccgcgtgctccag
ggggacgagtccatcgtcaactgcctgcagccgcaccccagctactgcttcttggccacc
agcggcatcgaccccgttgtgcggctgtggaacccccggccagagagtgaagacctcaca
ggccgagttgtggaggacatggagggtgcttcccaggccaaccagcggcgcatgaatgcg
gacccgttggaggtgatgctgctcaacatgggctatcggatcacaggcctgagcagtgcg
ggtgctggggcctctgacgatgaggacagctccgagggccaggtgcagtgccggcccagc
tag

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