Phocoena sinus (vaquita): 116761727
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Entry
116761727 CDS
T07759
Symbol
PDZRN3
Name
(RefSeq) E3 ubiquitin-protein ligase PDZRN3
KO
K15682
ligand of Numb protein X 3/4 [EC:
2.3.2.27
]
Organism
psiu
Phocoena sinus (vaquita)
Brite
KEGG Orthology (KO) [BR:
psiu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
psiu04121
]
116761727 (PDZRN3)
Enzymes [BR:
psiu01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
116761727 (PDZRN3)
Ubiquitin system [BR:
psiu04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Ligand of Numb proteins
116761727 (PDZRN3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PDZ
PDZ_6
PDZ_2
zf-C3HC4_2
zf-RING_2
zf-C3HC4
zf-RING_UBOX
zf-C3HC4_3
Sina_ZnF
zf-TRAF
zf-C3HC4_4
zf-RING_5
TRAF3_RING
Prok-RING_4
PDZ_Tricorn
zf-rbx1
CEP104_ZnF
Motif
Other DBs
NCBI-GeneID:
116761727
NCBI-ProteinID:
XP_032503792
Ensembl:
ENSPSNG00000021932
UniProt:
A0A8C9EDJ2
LinkDB
All DBs
Position
11:17166686..17415164
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AA seq
1068 aa
AA seq
DB search
MGFELDRFDGDVDPDLKCALCHKVLEDPLTTPCGHVFCAGCVLPWVVQEGSCPARCRGRL
SAKELNHVLPLKRLILKLDIKCAHAARGCGRVVKLQQLPEHLERCDFAPARCRHAGCGQV
LLRRDVEAHMRDACDARPVGRCQEGCGLPLTHGEQRAGGHCCARALRAHNGALQARLGAL
HKALKKEALRAGKREKSLVAQLAAAQLELQMTALRYQKKFTEYSARLDSLSRCVATPPGG
KGEETKSLTLVLHRDSGSLGFNIIGGRPCVDNQDGSSSEGIFVSKIVDSGPAAKDGGLQI
HDRIIEVNGKDLSRATHDQAVEAFKTAKEPIVVQVLRRTPRTKMFTPPSESQTVDTGTQT
DITFEHIMALTKMSSPTPPVLDPYLLPEEHPSAHEYYNPNDYIEGIHQEMEREELELEEV
DLYRMNSQDKLGLTVCYRTDDEDDIGIYISEIDPNSIAAKDGRIREGDRIIQINGIEVQN
REEAVALLTSEDNKNFSLLIARPELQLDEGWMDDDRNDFLDDLHMDMLEEQHHQAMQFTA
SVLQQKKHEEDGGTTDTATILSNQHEKDSGVGRTDESTRNDESSEQENNGDDAPAASPPL
AGQRKLMCSQDTLGSGDLPFSNESFISADCADADYLGIPVDECERFRELLELKCQVKSAS
PYGLYYPGSPLDAGKSDPESVDKELELLNEELRSIELECLSIVRAHKMQQLKEQYREPWM
LHNSGFRNYNTSVDVRRRELSDITELPEKSDKDSSSAYNTGESCRSTPLTLEMSPDNSLR
RAAEGVGGPGSEGAAGTTEAYGPSPRNLLSITEDPEVGSPDYSPSPEELDPSQALEGKER
QPSDDGSGSPTPSQKLGGGSYLSPFPHSPYKHAHIPAHAQHYQSYMQLIQQKSAVEYAQS
QMSLVSMCKDLNSANQSEPRMEWKVKIRSDGTRYITKRPVRDRLLRERALKIREERSGMT
TDDDAVSELKMGRYWSKEERKQHVVKAKEQRRRREFMMQSRLDCLKEQQGADDRKEMNIL
ELSHKKMMKKRNKKIFDNWMTIQELLTHGTKSPDGTRVYNSFLSVTTV
NT seq
3207 nt
NT seq
+upstream
nt +downstream
nt
atgggcttcgagctggaccgcttcgacggcgacgtggacccggacctgaagtgcgcgctg
tgccacaaggtcctggaggacccgctgaccacgccgtgcggccacgtcttttgcgccggc
tgcgtgctgccctgggtggtgcaggagggcagctgcccggcgcgctgccgcggtcgcctc
tcggccaaggagctcaaccacgtcctgccgctcaagcgcctcatcctcaagctcgacatc
aagtgcgcgcatgcggcgcgcggctgcggccgggtggtcaagctgcaacagctgcccgag
cacctcgagcgctgcgacttcgcgcccgctcgctgccgccacgcgggctgcggccaggtg
ctgctgcggcgcgacgtggaggcgcacatgcgcgacgcgtgcgacgcgcggccggtgggc
cgctgccaggagggctgcgggctgcccctgacgcacggcgagcagcgcgccggcggccac
tgctgcgcgcgggccctgcgggcgcacaacggcgcactgcaggcccgcctgggcgcgctg
cacaaggcgctcaagaaggaggcgctgcgcgcgggcaagcgcgagaagtcgctggtggca
cagctggccgccgcccagctggagctgcagatgaccgctctgcgctaccagaagaagttc
accgagtacagcgcacgcctcgactcgctcagccgctgcgtggccacgccgcccggcggc
aagggtgaagaaacaaaaagcctgactcttgtcctgcatcgggactccggctccctggga
ttcaatattatcggtggccggccgtgtgtggacaaccaagatggatcgtccagtgaaggg
atctttgtctccaaaatagttgacagtggacctgcagccaaggacggaggcctgcaaatt
cacgataggattatcgaggttaacggcaaagacttatccagagcaactcatgaccaggct
gtggaagccttcaagacagctaaggagcccatcgtggtccaggtgttgaggcgaacgcca
cggaccaaaatgttcacgcctccgtcagagtcacagacggtggacacgggaacccaaacg
gacatcacctttgagcacatcatggctcttaccaagatgtcctcgcccaccccacctgtg
ctggatccctatctcttgcccgaggagcatccctcggcccatgaatactacaatccaaac
gactacattgaaggcatccatcaggagatggagagagaggagctggagctggaggaagtg
gatctctacagaatgaacagccaggacaagctgggcctcacagtatgctaccggacggac
gatgaagatgacattgggatctatataagcgagatcgaccctaacagcatcgcggccaag
gatgggcgcatccgagaaggagaccgcatcatccagattaacgggatagaggtacagaac
cgcgaagaggctgtggctcttctaaccagcgaagacaacaagaacttttccttgctaatt
gcaaggcccgaactccagctggacgaggggtggatggacgacgacagaaacgactttctg
gacgacctgcacatggacatgctggaagagcagcaccaccaggccatgcagttcaccgcc
agcgtgctgcagcagaagaagcatgaggaagacgggggaaccacagacacggccaccatc
ctgtccaaccagcacgagaaggacagcggcgtgggccggacggacgagagcacgcgcaat
gacgagagctcggagcaggagaacaacggcgacgacgcccccgcggcctccccgccactg
gccgggcagaggaagctcatgtgcagccaggacaccctgggcagcggcgacctgcccttc
agcaacgagtccttcatctcggccgactgcgccgacgccgactacctgggcatcccggtg
gacgagtgcgagcgcttccgcgagctgctggagctcaagtgccaggtgaagagtgccagc
ccctacggcctgtactacccgggcagccccctggacgccggcaagagcgacccggagagc
gtggacaaggagctggagctgctgaacgaggagctgcgcagcatcgagctggagtgcctc
agcatcgtgcgcgcacacaagatgcagcagctcaaggagcagtaccgcgagccctggatg
ctgcacaacagcggcttccgcaactacaacaccagcgtcgacgtgcgcaggcgcgagctc
tcggacatcaccgagctccccgagaagtccgacaaagacagctcgagcgcgtacaacaca
ggcgagagctgccggagcaccccgctcaccttggagatgtcccccgacaactctctgagg
cgagcggccgagggcgtcggcggccccggcagcgaaggcgccgcggggaccacagaggcg
tacgggccgtctccaaggaatctgctctccatcacggaagatcccgaagtgggctccccg
gactacagcccttcccctgaagagctggaccccagccaggccctggagggcaaggagagg
cagcccagcgatgacggcagcgggagccccacccccagccagaagctgggcggcggctcg
tacctgtcgcccttcccgcactccccctacaaacacgcccacatcccggcgcacgcgcag
cactaccagagctacatgcagctgatccagcagaagtcggccgtggagtacgcgcaaagc
cagatgagcctggtgagcatgtgcaaggacctgaactcggccaaccagtcggagccgaga
atggagtggaaagtgaagatccggagcgacgggacgcgctacatcaccaagcggccggtg
cgggatcgcctgctgcgggagcgcgcgctcaagatccgcgaggagcgcagcggcatgacc
acggacgacgacgcggtgagcgagctgaagatggggcggtactggagcaaggaggagagg
aagcagcacgtggtgaaggccaaggagcagaggcggaggcgcgagttcatgatgcagagc
cggctcgactgcctgaaggagcagcaaggggccgacgacaggaaggagatgaacatcctg
gaactcagccacaaaaagatgatgaagaagaggaataaaaagatatttgataactggatg
acgatccaagaactcttaacccacggcacgaaatctccagacggcactagagtatacaat
tcgttcctgtcggtgactactgtataa
DBGET
integrated database retrieval system
