Phocoena sinus (vaquita): 116761970
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Entry
116761970 CDS
T07759
Symbol
SCN5A
Name
(RefSeq) sodium channel protein type 5 subunit alpha isoform X1
KO
K04838
voltage-gated sodium channel type V alpha
Organism
psiu
Phocoena sinus (vaquita)
Pathway
psiu04261
Adrenergic signaling in cardiomyocytes
psiu04519
Cadherin signaling
Brite
KEGG Orthology (KO) [BR:
psiu00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04519 Cadherin signaling
116761970 (SCN5A)
09150 Organismal Systems
09153 Circulatory system
04261 Adrenergic signaling in cardiomyocytes
116761970 (SCN5A)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
psiu04040
]
116761970 (SCN5A)
Ion channels [BR:
psiu04040
]
Voltage-gated cation channels
Sodium channel, voltage-gated (Nav)
116761970 (SCN5A)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ion_trans
Na_trans_assoc
Na_trans_cytopl
IQ_SCN5A_C
PKD_channel
GPHH
IQ
CcmD_alt
FraC
Motif
Other DBs
NCBI-GeneID:
116761970
NCBI-ProteinID:
XP_032504406
Ensembl:
ENSPSNG00000007326
LinkDB
All DBs
Position
11:complement(42701402..42787308)
Genome browser
AA seq
2017 aa
AA seq
DB search
MADFLLPRVTSSFRRFTRESLAAIEKRMAEKQARGSAASQESRDGLPEEEAPQPQLDLQA
SKKLPDLYGNPPQELIGEPLEDLDPFYSTQKTFIVLNKGKTIFRFSATNALYVLSPFHPI
RRAAVKILVHSLFSMLIMCTILTNCVFMAQRDPPPWTKYVEYTFTAIYTFECLVKFWLEA
SACMRFTFLRDPWNWLDFSVIVMAYVSENIKLGNLSALRTFRVLRALKTISVIPGLKTIV
GALIQSVKKLADVMVLTVFCLSVFALIGLQLFMGNLRHKCVRNFTVLSGTNGSVEADGLV
WESLDLYLNNPENYLLKNGTSDVLLCGNSSDAGTCPEGYRCLKAGENPDHGYTSFDSFAW
AFLALFRLMTQDYWERLYQQTLRSAGKIYMIFFMLVIFLGSFYLVNLILAVVAMAYEEQN
QATIAETEEKEKRFQEAMEMLKKEHEALTIRGVDTVSRSSLEMSPLAAVISHEGRSKQRK
QMSSGSEECGDDRFPKSDSEDGPQAVNHLSITHGLSRTSLKPRSSHGSIFTFRRRDVGSE
TDFADDENSTAGDSESHRTSLLVPWPPRRPSAQGQPSPGTSTPSHVLNGKRNSTVDCNGV
VSLLGAGDPEATSPGSSLLCPMMLERPLDTTTPSEEPGRPQMLTPQAPCVDGFEEPGERR
RALSAVSVLTSVLEELESHRKYPPCWNRFAQRYLIWECCPLWMSIKQRVKFMVMDPFADL
TITMCIVINTLFMALEHYNMTTEFEEMLQVGNLVFTGIFTAEMTFKIIALDPYYYFQQGW
NIFDSIIVVLSLMELGLSRMGNLSVLRSFRLLRVFKLAKSWPTLNTLIKIIGNSVGALGN
LTLVLAIIVFIFAVVGMQLFGKNYSELRHRISDPGVLPRWHMMDFFHAFLIIFRILCGEW
IETMWDCMEVSGQSLCLLVFLLVMVIGNLVVLNLFLALLLSSFSADNLTAPDEDGEMNNL
QLALARIQRGLRFIKRTTWDFCCGLLQRRAQKPAALATQGQLPGCTTTSSPPPPSETEKA
LPARKETRFEEGQRPGQGTPGDPEPVCVPIAVAESDTDDQEEDENSLSTEEESSKQQESQ
PMSGSPEALPEPRSWSQVSETTSSGAEASAAQADLRQQRRTEAPAPGCSETHENSYSEGS
TADMTNTVDLLEQIPDLGEDVKDPEDCFTKGCVQRCPCCTVDTTQAPGKVWWRLRKTCYH
IVEHSWFETFIIFMILLSSGALAFEDIYLEERKTIKVLLEYADKMFTYIFVLEMLLKWVA
YGFKKYFTNAWCWLDFLIVDVSLISLVANALGFAEMGPIKSLRTLRALRPLRALSRFEGM
RVVVNALVGAIPSIMNVLLVCLIFWLIFSIMGVNLFAGKFGRCINQTEGDLPLNYTIVNN
KSDCASFNVTGELYWTKVKVNFDNVGAGYLALLQVATFKGWMDIMYAAVDSRGYEEQPQW
EYNLYMYIYFVIFIIFGSFFTLNLFIGVIIDNFNQQKKKLGGQDIFMTEEQKKYYNAMKK
LGSKKPQKPIPRPLNKYQGFIFDIVTKQAFDVTIMFLICLNMVTMMVETDDQSPEKVNIL
AKINLLFVAIFTGECIIKMAALRYYYFTNSWNIFDFVVVILSIVGTVLSDIIQKYFFSPT
LFRVIRLARIGRILRLIRGAKGIRTLLFALMMSLPALFNIGLLLFLVMFIYSIFGMANFA
YVKWEAGIDDMFNFQTFANSMLCLFQITTSAGWDGLLSPILNTGPPYCDPTLPNSNGSRG
NCGSPAVGILFFTTYIIISFLIVVNMYIAIILENFSVATEESTEPLSEDDFDMFYEIWEK
FDPEATQFIEYSALSDFADALSEPLRIAKPNQISLINMDLPMVSGDRIHCMDILFAFTKR
VLGESGEMDALKIQMEEKFMAANPSKISYEPITTTLRRKHEEVSASIIQRAFRRHLLRRS
MKHASFLFRQQAGGSGLPEEDAPEQEGLIAYMMNKNFSQRLVPLSSSSISSTSFPPSYDS
VTRATSDNPQARASDYSPSEDLADIPPSPDRDRESVV
NT seq
6054 nt
NT seq
+upstream
nt +downstream
nt
atggcagacttcctgttacctcgggtcaccagcagcttccgcaggttcacccgggagtct
ctggcggccatcgagaagcgcatggcagagaagcaggcccgaggttcggccgcctcgcag
gagagccgagacggactgcccgaggaggaggctccccagccccagctggacctgcaggcc
tccaaaaagctgccggatctctatggcaacccaccccaagagctcattggggagcccctg
gaggacctggaccccttctatagcacccaaaagaccttcattgtcctgaacaaaggcaag
accatcttccggttcagtgccaccaacgccttgtatgtcctcagccccttccaccccatc
cggagagcggccgtgaagatcctcgttcattcgctcttcagcatgctcatcatgtgtacc
atcctgaccaactgcgtgttcatggcccagcgcgaccctccaccctggaccaagtatgtc
gagtacaccttcactgccatctacacctttgagtgtctggtcaaattctggctcgaggct
tctgcctgcatgcgtttcaccttccttcgggacccgtggaactggctggacttcagtgtg
atcgtcatggcgtatgtatcagaaaatataaaactaggcaatttgtcggctcttcgaact
ttcagagtcctgagagctctaaaaactatttcagttatcccaggcctgaagaccatcgtg
ggggccctgatccagtctgtgaagaagctggccgatgtgatggtcctcacggttttctgc
ctcagcgtctttgccctcatcggcctgcagctcttcatgggcaacctgaggcacaagtgc
gttcgcaacttcaccgtgctcagcggcaccaacggctccgtggaagccgacggcctggtc
tgggaatcgctggacctctacctcaacaacccagaaaactacttgctcaagaatggcacc
tctgatgtgttactgtgtgggaatagctctgacgctgggacatgtcccgagggctacagg
tgcctgaaggcaggcgagaaccctgaccacggctacaccagcttcgactcctttgcctgg
gcctttcttgcactcttccgactgatgacgcaggactactgggagcgcctctaccagcag
accctgaggtctgcagggaagatctacatgatcttcttcatgcttgtcatcttcctgggc
tccttctacctggtgaacttgatcctggctgtggttgccatggcctacgaggagcaaaac
caagccaccattgctgagacagaggagaaggaaaagcgattccaggaagccatggagatg
ctcaagaaagagcatgaggccctcaccatcaggggtgtggacaccgtgtcccgcagctcc
ttggagatgtcccctttggccgcagtaatctcccacgagggaaggagcaagcagagaaaa
caaatgtcttcagggtcggaggagtgtggggacgacaggttccccaagtccgactcggag
gatggtccccaagcagtgaatcatctcagcatcacccacggcctcagcaggacctccttg
aagccacgctccagccatggaagcattttcaccttccgccgacgggacgtgggttctgag
acagattttgcagatgatgaaaacagcactgccggggacagtgagagccaccgcacatca
ctgctggtgccttggcccccgcgccggcctagtgcccagggacagcccagtcccggaacc
tcaactccaagccacgtcctcaatggcaaaaggaacagcactgtggactgcaacggggtg
gtctccttgctgggggcaggcgaccctgaggccacttccccagggagcagcctcctctgc
cctatgatgctggagcgccccctggacacgaccacaccgtcggaggagccaggcaggcct
cagatgctgaccccccaggctccgtgtgtggatggcttcgaggagccaggagagcggcgg
cgagccctcagtgcagtcagcgtcctcaccagcgtactggaagagttggagtctcaccgc
aagtatccgccatgctggaatcgcttcgcccagcgctacctgatctgggagtgttgtcca
ctgtggatgtccatcaagcagagagtgaagttcatggtcatggacccattcgccgacctc
accatcaccatgtgcatcgtgattaacacactcttcatggcactggagcattacaacatg
acaactgaatttgaggagatgctgcaggtcggaaacctggtcttcacagggatcttcaca
gcagagatgaccttcaagatcatcgccctggacccctactactacttccagcagggctgg
aacatcttcgacagcatcatcgtcgtcctcagcctcatggagctgggcctgtcccgcatg
ggcaacttgtcggtgcttcgctccttccgcctgcttcgggtcttcaagctggcgaagtcc
tggcccaccctgaacacgctcatcaagatcatcgggaactcagtgggggcactgggcaac
ctgacgctggtgctggccatcatcgtgttcatcttcgctgtggtgggcatgcagctcttt
ggcaagaactactcagagctgaggcaccgcatcagcgacccaggtgtgctgccccgctgg
cacatgatggacttcttccacgccttcctcatcatcttccgcatcctatgtggcgagtgg
atcgagaccatgtgggactgcatggaggtgtctgggcagtcgctgtgcctgctggtcttc
ttgcttgttatggtcattggcaacctcgtggtcctgaacctcttcctggctttgctgctc
agctccttcagtgcagacaacctcacagcccctgacgaggacggggagatgaacaacctc
cagctggccctggcccgcatccagcggggcctgcgcttcatcaagcggaccacctgggac
ttctgctgtgggcttctgcagcggcgggctcagaagcctgcagccctcgccacccagggc
cagctgcccggctgcaccaccacctccagccccccaccaccctcagagacagagaaggcg
ctgccagcccgcaaggagacacggtttgaggaaggccaacggccgggccagggcacaccc
ggggatccggagcccgtgtgtgtgcccatcgccgtggccgagtcagacacggatgaccaa
gaggaggatgagaacagcctgagcacagaggaggagtccagcaagcagcaggaatcccag
cctatgtctggcagcccagaggccctcccggagcccaggtcctggagccaggtgtcagag
accacctcctctggggccgaggccagtgcagctcaggcagacttgcggcagcagcggaga
acagaggccccagccccagggtgcagtgaaacacacgagaacagttactctgaggggagc
acagcagacatgaccaacactgttgacctcctggagcagatccccgacctcggagaggac
gtcaaggatccagaggactgcttcactaaaggctgtgtccagcgctgtccctgctgcacc
gtggacaccacgcaggccccagggaaggtctggtggaggctgcgtaagacctgctaccac
attgtggagcacagctggttcgagacgttcatcatcttcatgatcctgctcagcagtgga
gcgctggccttcgaggacatctacctggaggagcggaagaccatcaaggtcctgctggag
tatgccgacaagatgttcacctacatcttcgtgctggagatgctgctcaagtgggtggcc
tatggcttcaagaagtacttcaccaatgcctggtgctggctcgatttcctcattgtggat
gtctcgctgatcagcctggtggccaacgcgctgggctttgctgagatgggccccatcaag
tcactgcggaccttgcgtgcgctccgacccctgcgagccctgtcacgatttgagggcatg
agggttgtggtcaatgccctggtgggtgccatcccctccatcatgaacgtcctcctcgtc
tgcctcatcttctggctcatcttcagtatcatgggcgtgaacctcttcgcggggaagttt
gggagatgcatcaaccagactgagggagacctgcccttgaactacaccatcgtgaacaac
aagagcgactgtgcgtctttcaacgtgactggcgaattgtactggaccaaggtgaaagtc
aactttgacaacgtgggggccgggtacctggcccttctgcaggtggcaacatttaaaggc
tggatggacatcatgtatgcagcggtggactccagggggtatgaagagcagccccagtgg
gaatacaacctctacatgtacatctactttgttattttcatcatcttcgggtctttcttc
accctgaaccttttcatcggtgtcatcattgacaacttcaaccaacagaagaaaaagtta
gggggacaggacatcttcatgacagaggagcagaagaagtactacaatgccatgaaaaag
ctgggctccaagaagccccagaagcccatcccacggcccctgaacaagtatcagggcttc
atattcgacattgtgaccaagcaggccttcgatgtcaccatcatgtttctcatctgcttg
aacatggtgaccatgatggtggagacagatgaccagagccctgagaaggtcaacatcttg
gccaagatcaacctgctcttcgtagccatcttcacaggcgaatgtatcatcaagatggct
gccctgcgctactattacttcaccaacagctggaacatctttgacttcgtggttgtcatc
ctctccatcgtgggcactgtgctctcagacatcatccagaagtacttcttctccccaacg
ctcttccgagtcatccgcctggcccggatcggccgcatcctcaggctgatccgtggggcc
aagggcatccgcacgctgctcttcgcgctcatgatgtccctgcccgccctcttcaacatt
gggctgctgctcttcctggtcatgttcatctactccatcttcggcatggccaacttcgcc
tatgtcaagtgggaggctggcattgatgacatgttcaacttccagaccttcgccaacagc
atgctgtgcctcttccagatcaccacgtcggcaggctgggacgggcttctcagccccatc
ctcaacacggggcctccctactgcgaccccaccctgcccaacagcaacggctcccggggg
aactgcgggagccccgccgtgggcatcctcttcttcaccacctacatcatcatctccttc
ctcatcgtggtcaacatgtacatcgccatcatcctggagaacttcagtgtggccacggag
gagagcacggagcccctgagcgaggatgacttcgacatgttctatgagatctgggagaag
tttgacccggaggccacccagttcattgagtattcggccctgtccgactttgctgacgcc
ctgtctgagccactccgaatcgccaagcccaaccagataagcctcatcaatatggacctg
cccatggtgagcggggaccgtatccactgcatggacatcctctttgccttcaccaagagg
gtcctgggcgagtctggggagatggacgccctgaagatccaaatggaggagaagttcatg
gcggccaacccgtccaagatctcgtacgagcccatcaccaccacactccggcgcaagcac
gaggaggtgtcggcctcgatcatccaacgggccttccgcaggcacctgctgcggcgctcc
atgaagcacgcctccttcctcttccgccagcaggcgggtggcagcggcctccccgaggag
gatgcccccgagcaggagggcctcatcgcctacatgatgaacaagaacttctcccagcgc
cttgtcccgctctccagctcctccatctcctccacgtccttcccaccctcctacgacagc
gtcaccagggccaccagcgataacccccaggcacgggcatctgactacagccccagcgag
gatctcgcggacatccccccatccccagacagggaccgtgaatctgtcgtgtga
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integrated database retrieval system
