Phocoena sinus (vaquita): 116762222
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Entry
116762222 CDS
T07759
Symbol
SMARCC1
Name
(RefSeq) LOW QUALITY PROTEIN: SWI/SNF complex subunit SMARCC1
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
psiu
Phocoena sinus (vaquita)
Pathway
psiu03082
ATP-dependent chromatin remodeling
psiu04714
Thermogenesis
psiu05225
Hepatocellular carcinoma
Brite
KEGG Orthology (KO) [BR:
psiu00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
116762222 (SMARCC1)
09150 Organismal Systems
09159 Environmental adaptation
04714 Thermogenesis
116762222 (SMARCC1)
09160 Human Diseases
09162 Cancer: specific types
05225 Hepatocellular carcinoma
116762222 (SMARCC1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
psiu03021
]
116762222 (SMARCC1)
03036 Chromosome and associated proteins [BR:
psiu03036
]
116762222 (SMARCC1)
Transcription machinery [BR:
psiu03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
116762222 (SMARCC1)
Chromosome and associated proteins [BR:
psiu03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
116762222 (SMARCC1)
PBAF complex
116762222 (SMARCC1)
GBAF(ncBAF) complex
116762222 (SMARCC1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIRM-assoc_2
SWIRM-assoc_3
SWIRM-assoc_1
SWIRM
Myb_DNA-binding
Myb_DNA-bind_6
HEAT_GCN1
Chromo
BRCT_2
DUF919
SpeFL
Motif
Other DBs
NCBI-GeneID:
116762222
NCBI-ProteinID:
XP_032504864
Ensembl:
ENSPSNG00000009056
UniProt:
A0A8C9BPV7
LinkDB
All DBs
Position
11:40170784..40348328
Genome browser
AA seq
1105 aa
AA seq
DB search
MAAAAGSGGLGATAGAAGLGGAAAAAGLAVYRRKDGGPTSKFWESPETVSQLDSVRVWLG
KHYKKYVHADAPTNKTLAGLVVQLLQFQEDAFGKHVTNPAFTKLPAKCFMDFKAGGTLCH
ILGAAYKYKNEQGWRRFDLQNPSRMDRNVEMFMNIEKTLVQSNCLTRPNIYLIPDIDLKL
ANKLKDIIKRHQGTFTDEKSKASHHIYPYPSSQEDEEWLRPVMRKDKQVLVHWGFYPDSY
DTWVHSNDVDVEIEDPPIPEKPWKVHAKWILDTDVFNEWMNEEDYEVDENRKPVSFRQRI
STKNEEPVRSPERRDRKASANARKRKHSPSPPPPTPTESRKKSGKKGQASLYGKRRSQKE
EDEQEDLTKDMEDPTPVPNIEEVVLPKNVNPKKDSENTPVKGGTVADLDEQDEETVTTGG
KEDEDPAKGDQSRSVDPGEDNVTEQTNHIIIPSYASWFDYNCIHVIERRALPEFFNGKNK
SKTPEIYLAYRNFMIDTYRLNPQEYLTSTACRRNLTGDVCAVMRVHAFLEQWGLVNYQVD
PESRPMAMGPPPTPHFNVLADTPSGLVPLHLRSPQVPAAQQMLNFPEKNKEKPIDLQNFG
LRTDVYSKKTLAKSKGASAGREWTEQETLLLLEALEMYKDDWNKVSEHVGSRTQDECILH
FLRLPIEDPYLENSDASLGPLAYQPVPFSQSGNPVMSTVAFLASVVDPRVASAAARAALE
EFSRVREEVPLELVEAHVKKVQEAARASGKVDPSYGLESSCIAGTGPDEPDKLEGAEEEK
METDTDGQQPEKAENKGENEMDEGDKAQDGENEKNSEKEQDSEVSEDTKSEEKETEENKE
LTDTCKERESDIGKKKVEHEISEGNVATAAAAALASAATKAKHLAAVEERKIKSLVALLV
ETQMKKLEIKLRHFEELETIMDREKEALEQQRQQLLTERQNFHMEQLKYAELRARQQMEQ
QQHGQNPQQAHQHSGGPGLAPLGAAGHPGMMPHQQPPPYPLMHHQMPPPHPPQPGQIPGP
GSMMPGQPMPGRMMSTVAANIHPPGSGPTPPGMPPIPGNILGPRVPLTAPNGMYPPPPQQ
QPPPPPPTDGVPPPPAPGPPASAAP
NT seq
3318 nt
NT seq
+upstream
nt +downstream
nt
atggccgcggcggcgggcagcggcgggctgggggcgacggcgggcgctgcgggtctggga
ggcgcggcggcggccgcgggcctggcagtttatcggcggaaggacgggggcccgaccagc
aagttttgggagagcccggagacggtgtcccagctggattcggtgcgggtctggctgggc
aagcactacaagaagtatgttcatgcggatgctcctaccaataaaacactggctgggctg
gtggtacagcttctccagttccaggaagatgcctttgggaaacatgtcaccaacccggcc
ttcaccaaactccctgcaaaatgtttcatggatttcaaagctggaggcaccttgtgtcac
attcttggggctgcttacaaatataaaaatgaacagggatggcggaggtttgatctacag
aatccatcccgaatggatcgtaatgttgaaatgtttatgaacattgaaaaaacattggtg
cagagcaattgtctgaccagacccaacatctacctcattccagacattgatctgaagttg
gctaataaattgaaagatataatcaaacgacatcaggggacatttactgatgagaagtca
aaagcttcccaccacatttatccatatccttcctcacaagaggatgaagagtggttgaga
cctgtgatgagaaaagacaagcaggtgttagtgcattgggggttttacccagacagctat
gatacttgggtccatagtaatgatgttgatgtggaaattgaagatccaccaattccagaa
aagccatggaaggttcatgcaaaatggattttggacactgatgttttcaatgaatggatg
aatgaggaggattatgaggtggatgagaacaggaagcccgtgagttttcgtcagcgaatt
tcaacaaagaatgaagagccagtcagaagtccagagagaagagatagaaaagcatcagct
aatgctcgaaagaggaaacattcaccttcccctccacctcccacacccacagaatcccgg
aagaagagcgggaagaaaggccaagctagtctttatgggaagcggagaagtcagaaagag
gaagatgagcaagaagatcttaccaaggacatggaagacccaacacctgtacccaacata
gaggaggtggttcttccaaaaaatgtaaacccaaagaaagatagtgaaaatacacctgtt
aaaggaggaactgtagcagatctagatgagcaggatgaagaaacagtcacaacaggagga
aaggaagatgaagatcctgcaaaaggtgatcagagtcggtcagttgaccctggtgaagat
aatgtgacagagcagaccaatcacattattattcctagctatgcatcgtggtttgattat
aactgtattcatgtgattgaacggcgtgctcttcctgagtttttcaatggaaaaaacaaa
tccaagactccagagatatacttggcatatcgaaattttatgatcgacacataccgccta
aatccccaggaatatttaaccagcactgcttgtcggaggaacttgactggagatgtatgt
gctgtgatgagggttcatgcctttttagagcagtgggggcttgttaattaccaagtggat
ccagaaagtcgacccatggcaatgggacctcctccgactcctcatttcaatgtattagct
gataccccctctgggcttgtacctctgcatcttcgatcacctcaggttcctgctgctcag
cagatgttaaattttcctgagaagaacaaggaaaaaccaattgatttgcagaactttggt
cttcgtactgacgtttactccaagaaaaccttagcaaagagtaaaggtgctagtgctgga
agagaatggactgaacaggagacacttctactgctggaggctctggagatgtataaggat
gactggaacaaagtgtcggaacacgttggaagtcgcacacaggatgaatgcatcctccac
tttttgaggcttcccattgaggacccataccttgagaattctgatgcttccctggggccc
ctggcctaccagcctgtccccttcagtcagtcaggaaacccagtcatgagcactgttgct
tttttggcatctgtggtggatcctcgtgtggcatctgccgcagccagagcggctttggaa
gagttttctcgagtccgggaggaggtaccactggaattggtggaagctcacgtcaaaaaa
gtacaagaagcagcacgagcctctgggaaagtggatccctcctatggtttggagagcagc
tgcattgcaggcacagggccagatgagccagacaagcttgaaggagctgaagaggaaaaa
atggaaacagatactgatggtcagcagcctgaaaaggcagaaaacaaaggggagaatgaa
atggatgaaggtgataaagctcaagatggagaaaatgaaaaaaatagtgagaaagaacag
gatagtgaagttagtgaagataccaaatcagaagaaaaggagactgaagagaacaaggaa
ctcactgatacttgtaaagaaagagaaagtgatattgggaagaagaaagtagaacatgaa
atttctgaaggaaatgtagccacagccgcagcagctgctcttgcctcagctgcaaccaaa
gccaagcacttggctgccgtggaagagagaaagatcaagtctctggtagctctcctggtt
gagacacaaatgaagaaactggagatcaaacttagacattttgaggaactggaaaccatc
atggacagagagaaagaagctttagaacaacagaggcagcagttgcttactgaacgccag
aacttccacatggagcagctgaaatacgctgagttgcgagcccgacagcaaatggaacag
cagcagcatgggcagaaccctcaacaggcacaccagcactcaggaggacctggcctggca
ccactgggagcagcagggcaccctggcatgatgcctcatcagcagccccctccctaccct
ctgatgcaccaccagatgccgccgcctcatccacctcagccaggtcagataccaggtcca
ggttccatgatgcctgggcagcccatgccaggccgcatgatgtccaccgttgcagccaac
atccacccccctgggagtggccctacccctcctggtatgcctccaatcccaggaaacatc
ttaggaccccgggtacccctcacggcacctaacggcatgtatccccctccgccgcagcag
cagccacctcctccaccacctacagatggagtccctccgcctcccgctccaggcccacca
gcctcggctgcgccctag
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integrated database retrieval system
