Phocoena sinus (vaquita): 116762283
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Entry
116762283 CDS
T07759
Symbol
TRIM71
Name
(RefSeq) LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase TRIM71
KO
K12035
tripartite motif-containing protein 71 [EC:
2.3.2.27
]
Organism
psiu
Phocoena sinus (vaquita)
Pathway
psiu05206
MicroRNAs in cancer
Brite
KEGG Orthology (KO) [BR:
psiu00001
]
09160 Human Diseases
09161 Cancer: overview
05206 MicroRNAs in cancer
116762283 (TRIM71)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psiu03019
]
116762283 (TRIM71)
04121 Ubiquitin system [BR:
psiu04121
]
116762283 (TRIM71)
Enzymes [BR:
psiu01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
116762283 (TRIM71)
Messenger RNA biogenesis [BR:
psiu03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
116762283 (TRIM71)
Ubiquitin system [BR:
psiu04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
116762283 (TRIM71)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NHL
Filamin
zf-B_box
DUF5128
SGL
ANCHR-like_BBOX
zf-C3HC4
zf-RING_5
Motif
Other DBs
NCBI-GeneID:
116762283
NCBI-ProteinID:
XP_032504983
Ensembl:
ENSPSNG00000009274
LinkDB
All DBs
Position
11:complement(51867191..51927223)
Genome browser
AA seq
872 aa
AA seq
DB search
MASFSETDFQICLLCKEMCGSPAPLSSNSSSSSSSSQTSTSSGGGGGGPGAAARRLHVLP
CLHAFCRPCLEAHRLPAAGGGAPGEPLKLRCPVCDQKVVLAEAAGMDALPSSAFLLSNLL
DAVVATADEPPPKNGRAGAAAGAGGHSNHRHHAHHAHPRASASAPPPLPPAPQPPAPPRS
APGGPAASPSALLLRRPHGCSSCDEGNAASSRCLDCQEHLCDNCVRAHQRVRLTKDHYIE
RGPPGPTAAAAAAAAQQLGLGPPFPGAPFSILSVFPERLGFCQHHDDEVLHLYCDTCSVP
ICRECTVGRHSGHSFVYLQEALQDSRALTIQLLADAQQGRQAIQLSIEQAQTVAEQVEMK
AKVVQSEVKAVTARHKKALEEXECELLWKVEKIRQVKAKSLYLQVEKLRQNLNKLESTIS
AVQQVLEEGRALDILLARDRMLAQVQELKTVRSLLQPQEDDRVMFTPPDQALYLAIKSFG
FVSSGAFAPLTKATGDGLKRALQGKGASFTVIGYDHDGEPRLSGGDLMSAVVLGPDGNLF
GAEVSDQQNGTYVVSYRPQLEGEHLVSVTLCNQHIENSPFKVVVKSGRSYVGIGLPGLSF
GSEGDSDGKLCRPWGVSVDKEGYIVVADRSNNRIQVFKPCGAFHHKFGTLGSRPGQFDRP
AGVACDTSRRIVVADKDNHRIQIFTFEGQFLLKFGEKGTKNGQFNYPWDVAVNSEGKILV
SDTRNHRIQLFGPDGIFLNKYGFEGALWKHFDSPRGVAFNHEGHLVVTDFNNHRLLVIHP
DCQSARFLGSEGTANGQFLRPQGVAVDQEGRIIVADSRNHRVQMFESNGSFLCKFGAQGS
GFGQMDRPSGIAVTPDGMIVVVDFGNNRILIF
NT seq
2619 nt
NT seq
+upstream
nt +downstream
nt
atggcttcgttctccgagaccgacttccagatctgcctgctgtgcaaggagatgtgcggc
tctccggcgccgctctcctccaactcgtcgtcgtcgtcgtcgtcctcgcagacgtccacg
tcgtcggggggcggcggcgggggccccggggctgcggcgcgccgcctacacgtcctgccc
tgcctgcacgccttctgccgcccgtgcctcgaggcgcaccggctgccggcggcgggcggc
ggcgcgccgggagagccgctcaagttgcgctgccctgtgtgcgaccagaaggtcgtgctg
gccgaggcggcgggcatggacgcgctgccctcgtccgccttcctgctcagtaacttgctc
gacgccgtggtggccacggctgacgagccgccgcccaagaacgggcgggccggcgccgcg
gcgggcgcgggcggccacagcaaccaccgacaccacgcgcaccacgcgcacccgcgcgct
tctgcctcggcgccgccgccactcccgccagcgccgcagccgcccgcgccgccccgctca
gcgcccggcggccccgcggcctccccgtcggcgctgctgctgcgccggcctcacggctgt
agctcctgcgacgagggcaacgcggcctcgtcgcgctgcctcgactgccaggagcacctg
tgcgacaactgcgtccgcgcgcaccagcgcgtgcgccttaccaaggaccactacatcgag
cgcggcccgcctggccccacagccgccgccgccgccgccgcggcgcagcagctcgggctc
ggaccgcccttccccggcgcgcccttctccatcctctcggtcttccccgagcgcctcggc
ttctgccagcaccacgacgacgaggtgctgcacctgtactgtgacacgtgctcagtgccc
atctgccgagagtgtactgtgggccggcacagcggccacagcttcgtctacctccaggag
gcgctgcaggactcacgggcgctcaccatccagctgctggctgatgcccagcagggccgc
caggccatccagctgagcatcgagcaagcccagacggtggcagagcaggtggagatgaag
gcaaaagtggtacagtcggaggtcaaagccgtgactgcgagacacaagaaggccctggag
gagncggagtgtgagctgctgtggaaggtagagaaaatccgccaggtgaaagccaagtcc
ctgtacctgcaggtggagaagctgcggcaaaacctcaacaaactggagagcaccatcagc
gccgtgcagcaggtcctggaggaggggcgggcgctggacatcctgctggcccgagaccgc
atgctggcgcaggtgcaggagctcaagaccgtgcgcagcctcctgcagccccaggaggac
gaccgggtcatgttcacaccccctgaccaggccctctacctcgccatcaagtccttcggc
tttgtcagcagcggggccttcgcgccgctcaccaaggccacgggcgacggcctcaagcgg
gccctccagggcaagggtgcctccttcactgtcatcggctacgaccatgacggggagccc
cgcctctcaggaggcgacctcatgtcagccgtggtcctgggccctgacggcaacctgttt
ggtgcggaggtgagcgaccagcagaacgggacatacgtcgtgagctaccggccgcagctg
gagggcgagcacctggtatcggtcaccctgtgcaaccagcacatcgagaacagccccttc
aaggtggtggtcaagtctggccgcagctacgtgggcatcgggctcccgggcctgagcttc
ggcagtgagggcgacagtgatggcaagctgtgccggccctggggcgtgagcgtggacaag
gagggctacatcgtggtcgctgaccgcagcaacaatcgcatccaggtgttcaagccctgc
ggcgccttccaccacaagttcggcactctgggctcccggcccgggcagtttgaccggcct
gctggcgtagcctgtgacacctcccgcaggatcgtggtggccgacaaggacaatcatcgc
atccagatcttcacctttgagggccagttccttctcaagttcggtgagaagggcaccaaa
aacgggcaatttaactacccttgggatgtggcggtgaattccgagggcaaaatcctggtc
tccgacacgcggaaccaccggatccagctgttcgggcccgatgggatcttcctgaataag
tatggcttcgagggggctctctggaagcactttgactccccgaggggggtggctttcaac
cacgagggccacttggtggtcaccgacttcaacaaccaccggctcctggtcattcaccca
gactgccagtcggcccgcttcctgggctcagagggcaccgccaatgggcaattcctgcgc
ccacagggcgtggccgtggaccaggaggggcgcatcatcgtggccgattccaggaaccac
cgggtgcagatgttcgagtccaacggcagcttcctgtgcaagtttggcgctcagggcagt
ggctttgggcagatggaccggccctccggcatcgctgtcacgccggatgggatgattgtc
gtggtggactttggcaacaatcgaatcctcatcttctaa
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