Phocoena sinus (vaquita): 116762467
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Entry
116762467 CDS
T07759
Symbol
SCN11A
Name
(RefSeq) sodium channel protein type 11 subunit alpha isoform X1
KO
K04843
voltage-gated sodium channel type XI alpha
Organism
psiu
Phocoena sinus (vaquita)
Brite
KEGG Orthology (KO) [BR:
psiu00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
psiu04040
]
116762467 (SCN11A)
Ion channels [BR:
psiu04040
]
Voltage-gated cation channels
Sodium channel, voltage-gated (Nav)
116762467 (SCN11A)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ion_trans
Na_trans_assoc
IQ_SCN5A_C
PKD_channel
GPHH
Motif
Other DBs
NCBI-GeneID:
116762467
NCBI-ProteinID:
XP_032505308
Ensembl:
ENSPSNG00000009431
LinkDB
All DBs
Position
11:complement(42951292..43081587)
Genome browser
AA seq
1855 aa
AA seq
DB search
MKEVKVTRRQRKDDWPLNREHSSSFGAAPPRKASTARSRSLDSARDLLCGELQEAPQRLL
PGATLPGGRVKMDDRCYPVIFPDVRNFRPFTPDSLAAIKKRIAIQKEKKKSKDQTAAEPQ
PRLQLDLKVSRKLPMLYGDIPHELIGKPLEDLDPFYRNHKTFMVLNKKRTIYRFSAKRAL
FIFGPFNSIRSLAIRISVHSLFSMFIICTVIINCVFMAMTRGKDSVNVDTESAEYIFTGI
YIFETLVKILARGFILDEFSFLRDPWNWLDSIVIATAFVSYSPYIKDSSISLSSLRTFRV
FRALKAISVISGLKVIVGALLRSVKRLVDVMILTLFCLSIFTLVGQQLFMGNLNQKCVRK
DCGSDYKDDCFEKKDSTEFRICGTWMESGACSEQFECKHTNKNPDYNYTNFDSFGWSFLA
VFRLMTQDSWEKLYQQTLRTSGLYSVFFFVVVIFLGSFYLINLTLAVVTMAYEEQNKNVA
AETEAKEKMFQEAQQLLKEEKEALVAMGIDRSSLNSLEASSFSLKKRKLFGNKKGKSFFL
RKSGKDQVPGLDSDEDSSKKPHLLEQTKRLSQNLSVDHCDEHRDPFQRQRALSAVSILTI
TMHEQEKSQEPCLPCGENLASKYLVWDCSPRWLCIKKALRTMMTDPFTELAITICIIINT
LFLAMEHYKMDQSFENMLYTGNLVFTGIFMAEMCLKIIALDPYHYFRGGWNIFDSIVALL
SFAEVIINSMCPGKQSCMSLRSLRVLRVFKLAKSWPTLNTLLKIIGHSVGALGNLTVVLA
IVVFIFSVVGMQLFGSKFNCIKSNSKSHDPAVPCLRRWHMGDFYHSFLVVFRILCGEWIE
NMWECMQEANQALCIIVFLLIMVIGKLVVLNLFIALLLNSFSNEERDGHLEGEVRKTKVQ
LALDRFCRAFCFVIYTLEHFCTKWCRRQHLPKEKEVTEGPEAESKGVIPLVIEMRKGPET
WEEFGVLTSAPKTLSVGHDRTWLAPLAEEEDDAESPGEDKAQPITQPEPGKQCQASELHQ
KTKEPTSPGAQIVEMDIFSEGDPYLLVQNPRKKSDATSVLSECSTTGPQDPFRRVLEMVP
KKEPERCLPKGLNYCSPCCTMDKRKSPWIIWWNLRKTCYQIVKHSWFESFIIFVILLSSG
ALVFEDIYLGTQPKIQTILNCTDSIFTYIFILEMGLKWVAFGFRKYFTSAWCWLDFIIVI
VSVTSLIDLKVLKSFRILRALRPLRALSQFEGMKVVVNALIGAIPAILNVLLVCLIFWLI
FCILGVSLFSGKFGRCVNVTDGNSVINYNIVANRSQCESGNFSWFTLKVNFDNVGMAYLA
LLQVATFKGWMDIMYAAVDSRGEGQQPRFEENSLMYVYFVVFIIFGSFFTLNLFIGVIID
NFNQQQKKISGQDIFLTEEQKKYYNAMKKLGSKKPQRPIPRPLNKCQGFVFDLVTHQVFD
IVIIILIFLNMVSMMAESYGQSKAMELFLERLNLAFVVVFTTECLIKIFALRQYYFTSGW
NLFDFVIVVISIVSTVVSALKTQAHIPFPPTFFRIVRLARIGRILRLVRAARGIRTLLFA
LMMSLPSLFNIGLLLFLVMFIYAIFGMNCFCKVKEESGIDDIFNFKTFKGSMLCLFQITT
SAGWDALLSPMLQSKDSCNPKSENCHLSAIAITYFVSYIIISFLIVVNMYIAVILENFNI
ATEESEDPLGEDDFEIFYEVWEKFDPEATQFIEYSALSDFADALPEPLRVAKPNKYQFLV
MDLPMVSGDRLHCLDILFAFTARVLGESSGLDSMKAVMEEKFMEANPFKKLYEPIVTTTK
RKEEERCAAVIQKAFRKYMTKTKCTLEDRPHSPLQTLCNGDLSSSGVAECKVHYD
NT seq
5568 nt
NT seq
+upstream
nt +downstream
nt
atgaaggaagtgaaggtgaccaggagacagaggaaggatgattggccattgaacagggag
cacagttccagctttggagctgcccctcccagaaaggcttcaactgccaggagcaggagc
ttggactctgcgagagacttgctctgcggagagcttcaagaggcaccacagaggctgctg
cctggagccaccttaccaggaggcagggtgaagatggatgacaggtgctacccggtgatc
ttcccagatgtgaggaatttccgccccttcactcctgactctttggctgcaatcaagaag
cggatcgccatccaaaaggagaaaaaaaagtccaaagaccagacagcagcagaaccccag
cctcgacttcagcttgacctaaaggtgtccagaaagttgcccatgctctatggtgacatt
ccccatgagctgatagggaagcccctggaagacttggacccattctacagaaatcataag
acatttatggtgttgaacaaaaagagaacaatctaccgcttcagtgccaaacgtgccttg
ttcatttttgggcctttcaattcaatcagaagtttagccattagaatttcagtccattca
ttgttcagcatgttcatcatctgcaccgtcatcatcaactgcgtgttcatggccatgact
cgtgggaaggacagcgttaacgtagatactgagagtgcggagtatatcttcactgggatt
tatatatttgaaacattagttaaaatattggcaagaggttttattctggatgagttttct
ttccttcgagatccgtggaactggctggactccattgtcattgcaacagcgtttgtatca
tattcaccatatatcaaggacagcagcatcagtctgtcatccctgcgtaccttccgagtg
ttcagagctttgaaagcaatttcagtaatttcaggtctgaaggtcattgttggggccttg
ctgcgctctgtgaagaggcttgtcgatgtgatgatcctgactctcttttgcctcagcatc
ttcaccctggtaggtcagcagctcttcatgggaaatctgaaccagaaatgtgtgaggaaa
gactgtggctctgactataaagacgattgctttgaaaagaaagattccactgaattcaga
atatgtggcacatggatggagagcggggcttgttctgaacaatttgaatgcaaacatacc
aataaaaatcctgactataattacacgaattttgacagctttggctggtcttttcttgcc
gtgttccggcttatgacccaagattcctgggagaagctttatcaacagactttgcgcacc
tcagggctctactcagtcttcttctttgtggtggtcatcttcctgggctctttctacttg
attaacttaaccctggctgttgtcaccatggcttacgaggaacagaacaagaatgtagct
gctgagacagaagccaaggagaagatgttccaggaagcccagcagctgttaaaggaggag
aaggaggctctggttgccatgggtattgacagaagttcacttaattcccttgaagcatca
tctttttccctgaagaagagaaagctatttggtaataagaaaggaaaatccttctttttg
agaaagtctgggaaagaccaggttccaggattagattctgatgaagattcttcaaaaaag
ccacacctacttgaacaaaccaaacgactgtcccagaatctgtcagtggaccactgtgat
gagcacagagaccccttccaaaggcagagagcgctgagcgctgtgagcatcctcaccatc
accatgcacgaacaagaaaaatcacaggaaccttgcctcccatgtggggaaaacctggca
tccaaatacctcgtgtgggactgtagcccccggtggctgtgcattaagaaggccctgaga
accatgatgactgacccctttactgagctggccatcaccatctgcatcataatcaacact
ctcttcttggccatggagcattacaaaatggaccagagttttgagaacatgttgtacaca
gggaatttggttttcactggcattttcatggctgaaatgtgcctaaaaatcattgcgctg
gatccctaccactactttcgtggaggctggaacatttttgacagcattgttgctcttctg
agttttgcagaggtgataataaacagtatgtgtccaggaaaacaaagttgtatgtcactt
cgttccttaagagtgctgagggtcttcaagttagccaaatcctggccaactttaaacaca
ctgcttaagataattggccattccgttggagcccttggaaacctgactgtggtcttggcc
attgtggtctttattttctcagtagttggcatgcagctttttggctctaaattcaattgc
ataaagagtaattcaaagtcccatgaccctgcagtcccatgtttacgacgctggcacatg
ggggatttctaccactcctttctggtggtattccgcatcctctgtggggaatggatcgaa
aacatgtgggaatgtatgcaagaagctaaccaagcactgtgcattattgtgtttctgttg
atcatggtgataggaaaactcgtggtactcaacctcttcattgccttgctgctcaattcc
ttcagcaatgaggagagagatggacacttggaaggagaggtcaggaaaaccaaagtccag
ttagccctggaccggttctgccgggcgttttgttttgtcatatatactcttgagcatttt
tgtaccaagtggtgcaggagacaacatttaccaaaggaaaaagaggtgacagaaggccct
gaggcagagagcaaaggtgtcattcccctggtcatagagatgagaaagggcccagagacc
tgggaggagtttggtgtactgacttccgcaccaaagaccttgagtgtcgggcatgatcgg
acttggttggccccactagcagaggaagaagatgatgctgaatcccctggtgaagataag
gcacagcctatcacacaacctgagcctggaaaacagtgtcaggccagtgaactccatcag
aagaccaaggagcccaccagtccaggagctcagattgtggaaatggacatattctctgaa
ggtgatccttatctgttggtacagaatccccgaaagaagtctgatgctacgagtgtgctc
tcagaatgtagcaccactggtccacaggatccctttaggcgggtacttgaaatggttccc
aaaaaggaaccagagagatgtttgcccaaaggcctgaattactgttctccatgctgtact
atggacaagaggaagtccccctggatcatttggtggaacctgcggaaaacctgctaccaa
atagtgaaacacagctggtttgagagctttattatctttgtgattctgctgagcagtggg
gcactggtatttgaagatatttaccttggtacacaacccaaaatccaaacaatacttaat
tgtactgacagtattttcacatacatttttatcttggagatgggtctgaaatgggtggcc
tttggatttaggaagtatttcaccagtgcctggtgctggctcgatttcatcattgtgatt
gtctctgtgaccagtctcatcgacttaaaggtcttgaagtccttccggattctgcgagcg
ctgaggcctctgcgagcgctgtcccagtttgaaggaatgaaggtggtagttaacgctctc
ataggtgccatacctgccatcctgaatgttttgcttgtctgcctcattttctggctcata
ttttgtatcctgggagtaagtttgttttctggaaaatttggaagatgcgttaacgtaaca
gatggaaactcagttataaattacaacattgttgcaaaccggagtcaatgtgaaagtgga
aatttctcctggttcaccctgaaagtcaactttgacaatgtgggaatggcttacctcgcg
ctgctgcaagtggcaacatttaagggctggatggatattatgtatgcagctgttgattcc
agaggggaaggacaacagccaaggtttgaggagaactcattaatgtatgtttacttcgta
gtttttatcatctttggctcattcttcactctgaatctctttattggtgttattattgac
aacttcaaccaacagcagaaaaagataagtggccaagacatctttctgacagaagaacag
aagaaatactataatgcaatgaaaaaattaggatccaaaaaacctcaaaggcccatccca
aggcctctgaacaaatgccagggttttgtttttgacctagttacacaccaggtctttgac
atcgtcatcatcatcctcattttcctcaacatggttagcatgatggctgaatcatatggc
cagtccaaagccatggaactcttccttgagcgtctcaacctggcctttgtggtcgtcttt
acaactgagtgtctcatcaaaatctttgctttgaggcaatactacttcaccagtggctgg
aatttatttgattttgtgatcgtggtcatttctattgttagtacagttgtttctgccttg
aaaacccaggcacacattcctttccctccaacattcttcagaattgtccgcttggctcgg
attggccgaatcctgagacttgttcgggcagcacgaggaatcagaactctcctttttgcg
ctaatgatgtctcttccctctctattcaacattggtcttctactctttctggttatgttt
atttatgccatttttggtatgaactgtttttgcaaagtgaaggaagagtctggaattgat
gacatattcaacttcaaaactttcaaaggcagcatgctctgcctcttccagataaccacg
tcagcaggctgggatgccctcctcagccccatgttgcaatcaaaagactcatgtaacccc
aagtcagagaactgtcacctctctgccatagccataacctacttcgtcagttatatcatc
atctcctttctcatcgtggtcaacatgtatattgctgtgattttagaaaacttcaatata
gccactgaagaaagtgaggaccctttgggtgaagacgactttgaaatattctacgaagtc
tgggaaaagtttgacccggaagcaacacaatttatcgaatattctgctctttctgacttt
gctgatgcccttcctgagcctctgcgtgtggcaaagccaaataaataccaatttttagtc
atggacttgcccatggtgagcggagatcgccttcattgcctggatattctgttcgctttc
accgctagggtacttggtgagtccagtggcctggatagcatgaaagcagtgatggaggag
aagttcatggaagccaaccctttcaagaagttatatgaacccatagtcaccaccaccaag
aggaaggaagaagaaagatgtgctgctgttattcagaaggcctttcgaaagtacatgacg
aagaccaagtgtaccttggaagacaggcctcattcacccctccagacactctgcaatgga
gacttgtccagctctggggtggccgagtgcaaggtccactatgactga
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integrated database retrieval system
