KEGG   Phocoena sinus (vaquita): 116762468
Entry
116762468         CDS       T07759                                 
Symbol
WDR48
Name
(RefSeq) WD repeat-containing protein 48 isoform X1
  KO
K15361  WD repeat-containing protein 48
Organism
psiu  Phocoena sinus (vaquita)
Pathway
psiu03460  Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:psiu00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03460 Fanconi anemia pathway
    116762468 (WDR48)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:psiu03400]
    116762468 (WDR48)
DNA repair and recombination proteins [BR:psiu03400]
 Eukaryotic type
  DSBR (double strand breaks repair)
   FA (Fanconi anemia) pathway
    Other FA pathway factors
     116762468 (WDR48)
SSDB
Motif
Pfam: WD40_Prp19 DUF3337 WD40 WD40_CDC20-Fz WD40_WDHD1_1st WDR55 Beta-prop_CAF1B_HIR1 Beta-prop_TEP1_2nd Beta-prop_EML_2 EIF3I WD40_MABP1-WDR62_2nd Beta-prop_EML Beta-prop_WDR75_1st Beta-prop_TEP1_C Beta-prop_WDR90_POC16_2nd Beta-prop_IFT122_1st Beta-prop_SPT8 NBCH_WD40 Beta-prop_SCAP Beta-prop_EIPR1 Beta-prop_DCAF12 WD40_MABP1-WDR62_1st ANAPC4_WD40 WDR90_beta-prop_4th Beta-prop_RIG_2nd Beta-prop_IP5PC_F WDR54 Beta-prop_DCAF4 WD_LRWD1 WD40_RFWD3 Beta-prop_Vps41 RAWUL Nucleoporin_N WD40_like Tfb2_C Beta-prop_VPS8
Other DBs
NCBI-GeneID: 116762468
NCBI-ProteinID: XP_032505312
Ensembl: ENSPSNG00000010194
UniProt: A0A8C9BXE1
LinkDB
Position
11:43082682..43127812
AA seq 677 aa
MAAHHRQNTAGRRKVQVSYVIRDEVEKYNRNGVNALQLDPALNRLFTAGRDSIIRIWSVN
QHKQDPYIASMEHHTDWVNDIVLCCNGKTLISASSDTTVKVWNAHKGFCMSTLRTHKDYV
KALAYAKDKELVASAGLDRQIFLWDVNTLTALTASNNTVTTSSLSGNKDSIYSLAMNQLG
TIIVSGSTEKVLRVWDPRTCAKLMKLKGHTDNVKALLLNRDGTQCLSGSSDGTIRLWSLG
QQRCIATYRVHDEGVWALQVNDTFTHVYSGGRDRKIYCTDLRNPDIRVLICEEKAPVLKM
ELDRSADPPPAIWVATTKSTVNKWTLKGIHNFRASGDYDNDCTNPITPLCTQPDQVIKGG
ASIIQCHILNDKRHILTKDTNNNVAYWDVLKACKVEDLGKVDFEDEIKKRFKMVYVPNWF
SVDLKTGMLTITLDESDCFAAWVSAKDAGFSSPDGSDPKLNLGGLLLQALLEYWPRTHVN
PIDEEENEVNHVNGEQENRVQKGNGYFQVPPHTPVIFGEAGGRTLFRLLCRDSGGETESM
LLNETVPQWVIDITVDKNMPKFNKIPFYLQPHASSGAKTLKKDRLSASDMLQVRKVMEHV
YEKIINLDNESQTTSSSNNEKPGEQEKEEDIAVLAEEKIELLCQDQVLDPNMDLRTVKHF
IWKSGGDLTLHYRQKST
NT seq 2034 nt   +upstreamnt  +downstreamnt
atggcggcccatcaccggcagaacacggcagggcggaggaaagtacaggtttcctatgtt
attcgagatgaagtggagaagtacaaccgaaatggggtcaatgccctgcaactggaccca
gcactaaacagacttttcacggcaggtcgagactccatcataagaatatggagtgtcaat
cagcacaagcaagatccatatatagcatctatggaacaccataccgattgggtaaatgac
attgtactctgttgtaatgggaaaacattaatatctgcttcttctgatacaacagtaaaa
gtatggaatgcacataagggattttgcatgtcaacattaaggactcataaggattatgta
aaagccttagcatatgccaaggataaagaactggtagcatcggctgggttggaccgacaa
atattcctttgggatgtgaatactctaacagcattgactgcctcaaataacactgtcaca
acttcttctttaagtgggaacaaagattccatttatagcctggcaatgaatcaactggga
acaatcattgtatcagggtccactgagaaggttttaagagtctgggatccaagaacatgt
gcaaaactaatgaagcttaaagggcacacagataatgttaaagcattgctgttgaacaga
gatggcacacagtgcctttccggcagttctgatgggacaattcgcctttggtcccttggc
cagcagagatgtatagcaacgtaccgagtgcatgatgaaggtgtttgggctctacaggtc
aatgacaccttcacacatgtgtactctggaggaagggaccggaagatttattgtacagac
ctaagaaaccctgacattcgggtgctaatctgtgaagaaaaagcaccagttctcaagatg
gagcttgacagatcagctgatccccctcctgcaatctgggttgcaacaacgaagtctaca
gtaaataaatggacattgaaaggaattcataattttagagcctctggagattatgacaat
gactgtacaaatcctataacacccctttgtacacaacccgaccaggttattaaagggggt
gctagtattattcagtgtcacattcttaatgataagagacatatattaaccaaagatacc
aataataatgtggcatattgggatgtattaaaggcatgtaaagttgaagatctgggcaaa
gtggattttgaagatgaaattaagaaaagatttaagatggtatatgtaccaaattggttc
tcagtagacttaaaaacagggatgttgacaattactttggatgagagtgactgttttgct
gcttgggtttctgcaaaagatgctggctttagcagccctgacgggtcagatccaaaactg
aacttaggaggacttttactccaggccctcctagaatattggcctaggacgcatgtgaat
ccaatagatgaagaagaaaatgaagtaaaccatgtaaatggggagcaggagaaccgagta
cagaagggaaatggctatttccaggtgcccccacacactcctgtgatctttggtgaagct
ggaggtcgcaccttgttcaggctgctctgccgagactctgggggtgagactgagtccatg
cttctgaatgagacagtgccacaatgggtaattgacatcactgtggataaaaatatgccc
aaattcaacaaaattcctttctacctccaacctcatgcatcttcaggagcaaaaacctta
aaaaaagatagactctctgctagtgacatgcttcaagtccggaaagtaatggaacacgtc
tatgagaaaatcatcaacttggataatgagtctcaaaccactagctcttctaataatgaa
aaaccaggagaacaggaaaaagaagaggatattgctgtgttggcagaggagaaaattgaa
cttttgtgccaggaccaggttttggatccaaatatggaccttcgaacagtgaaacacttc
atatggaagagtggtggtgacctcaccctccattaccgtcagaagtccacgtga

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