Phocoena sinus (vaquita): 116762504
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Entry
116762504 CDS
T07759
Symbol
CNOT10
Name
(RefSeq) CCR4-NOT transcription complex subunit 10 isoform X1
KO
K12607
CCR4-NOT transcription complex subunit 10
Organism
psiu
Phocoena sinus (vaquita)
Pathway
psiu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psiu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
116762504 (CNOT10)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psiu03019
]
116762504 (CNOT10)
Messenger RNA biogenesis [BR:
psiu03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
116762504 (CNOT10)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_1
TPR_2
TPR_14
ARM_TT21_N
TPR_12
TPR_19
ARM_TT21
TPR_8
TPR_MalT
TPR_7
DUF6058
TPR_17
Motif
Other DBs
NCBI-GeneID:
116762504
NCBI-ProteinID:
XP_032505414
Ensembl:
ENSPSNG00000009474
UniProt:
A0A8C9E1R7
LinkDB
All DBs
Position
11:complement(51953009..52017269)
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AA seq
743 aa
AA seq
DB search
MAADKPADQGAEKHEGTGQSSGITDQEKELSTSAFQAFTAGNYDVCLQHLACLQDINKDD
YKIILNTAVAEFFKSNQTTTDSLRQTLNQLKNQVHSAVEEMDGLDDVENSMLYYNQAVIL
YHLRQYTEAISIGEKLYQFIEPFEEKFAQAVCFLLVDLYILTYQAEKALHLLAVLEKMIS
QGNNNKNGKNETGNNSNKDGSNHKAESGALIEAAKSKIHQYKVRAYIQMKSLKACKREIK
SVMNTAGNSAPSLFLKSNFEYLRGNYRKAVKLLNSSNIAEHPGFMKTGECLRCMFWNNLG
CIHFAMSKHNLGIFYFKKALQENDNVCAQLSAGSTDPGKKFSGRPMCTLLTNKRYELLYN
CGIQLLHIGRPLAAFECLIEAVQVYHANPRLWLRLAECCIAANKGTSEQETKGLPSKKGI
VQSIVGQGYHRKIVLASQSIQNTVYNDGQSSAIPVASMEFAAICLRNALLLLPEEQQDPK
QENGSKNSNQLGGNTESSESSDTCSSKSHDGDKCIPAPPSSPLRKQELENLKCSILACSA
YVALALGDNLMALNHADKLLQQPKLSGSLKFLGHLYAAEALISLDRISDAITHLNPENVT
DVSLGISSNEQDQGSDKGENEAMESSGKRAPQCYPSSVNSARTVMLFNLGSAYCLRSEYD
KARKCLHQAASMIHPKEVPPEAILLAVYLELQNGNTQLALQIIKRNQLLPTVKTLSEMRK
KPVFQPVHPIQPIQMPAFTVQRK
NT seq
2232 nt
NT seq
+upstream
nt +downstream
nt
atggccgcagacaagcctgcagatcagggagcagagaaacatgaagggacaggtcagtcc
tctgggattactgatcaagagaaggagttgtccaccagtgctttccaggctttcacagct
ggaaattatgatgtctgtctgcaacatcttgcctgcctacaagacataaacaaagacgat
tataaaataattttgaatacagcagtagctgagtttttcaaaagtaaccagacaacaaca
gatagtttaagacagacacttaaccagctgaagaatcaggtgcactcggctgttgaagaa
atggatggattagatgatgttgaaaacagtatgttgtattacaatcaagcagtcatcctg
tatcatctccggcagtatacagaagccatatccattggtgaaaaactttatcagttcata
gaaccttttgaagaaaaatttgcccaagcagtgtgttttttgctcgtagacctgtatata
ttaacctaccaagctgagaaagctttacatcttcttgctgttctagaaaaaatgatttca
cagggcaacaataacaaaaatggaaagaatgagactggtaataacagcaacaaagatggg
tctaatcataaagctgaaagtggagctctaatagaagctgcgaagtcaaagatacatcag
tataaagtaagagcgtatatccaaatgaagtccctgaaggcatgcaaaagggaaatcaag
tctgtcatgaacacagctgggaattctgcaccctccctgtttcttaaaagcaatttcgag
tacttaagaggcaattatcgaaaagctgtgaagctgttgaatagttcaaacattgctgag
catccaggattcatgaaaacaggtgaatgcttgaggtgcatgttctggaataatcttggt
tgtatccattttgccatgagcaagcacaatttgggaattttctactttaaaaaggctctg
caggagaacgacaacgtctgtgcacagctcagtgcaggtagcactgatccaggcaaaaaa
ttttcaggaagacccatgtgtacattactaaccaacaagaggtatgagttgctgtataac
tgtgggattcagctgcttcacattggaaggcctcttgctgcatttgagtgtctgattgaa
gctgttcaggtttaccatgcaaacccccgcctctggctgaggctggctgagtgctgcatt
gctgccaataaggggacttctgaacaagaaactaaaggtcttccaagtaaaaaaggaatt
gtacagtctattgttggtcaaggctatcatcgtaaaatagttctggcatcacagtccata
caaaatactgtatataatgatggacagtcttcagccattcctgtagccagtatggagttt
gcagccatttgtctcagaaatgccttgttgctgttacctgaagaacagcaagatccaaag
caggaaaatgggtctaaaaatagtaatcaattaggtggcaacacagagagcagcgaaagc
agtgacacttgcagcagtaaaagccacgatggagataaatgcattccagctccaccttct
tccccattgagaaaacaggaattagaaaacttaaagtgctccatactcgcctgtagtgct
tacgtggctctggctttgggtgataaccttatggctttgaatcatgcagataaacttctt
cagcagcccaagctgtcaggatccctgaagtttctgggccatttatatgctgcagaagcc
ctcatctctctggacagaatctctgatgctattactcatttgaacccggagaatgtcact
gatgtttccttagggatctcttcaaatgagcaggaccaaggatcagacaaaggtgaaaat
gaagcaatggaatcctctgggaagcgggcacctcaatgctaccccagttccgtcaactca
gcccggactgtgatgctgttcaacctgggcagcgcctactgcctgaggagcgagtatgac
aaagcacggaagtgtctccaccaggcggcctcaatgatccatcctaaagaggtgccccct
gaagccatcctgctggctgtctaccttgagctgcagaatggtaatacccagctggcctta
cagatcatcaaaaggaatcagctgctccctacagtgaaaacactctctgaaatgagaaag
aagccagtgttccagcctgtccacccgatccagcccatccaaatgccggcgttcactgta
cagagaaagtga
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