Phocoena sinus (vaquita): 116762758
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Entry
116762758 CDS
T07759
Symbol
SHQ1
Name
(RefSeq) LOW QUALITY PROTEIN: protein SHQ1 homolog
KO
K14764
protein SHQ1
Organism
psiu
Phocoena sinus (vaquita)
Brite
KEGG Orthology (KO) [BR:
psiu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
psiu03009
]
116762758 (SHQ1)
Ribosome biogenesis [BR:
psiu03009
]
Eukaryotic type
Sno RNPs
Box H/ACA snoRNPs
116762758 (SHQ1)
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
SHQ1
SHQ1-like_CS
DUF1635
Motif
Other DBs
NCBI-GeneID:
116762758
NCBI-ProteinID:
XP_032506048
Ensembl:
ENSPSNG00000022028
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All DBs
Position
11:17860309..17950429
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AA seq
577 aa
AA seq
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MLTPAFDLSQDPDFLTVAIRVPYARVSEFDVYFEGVDFRFYAKPYFLRLTLPGRIVENGS
EQGSYAADKGIFTIRLPKETPGQHFEGLNMLTALLAPRKSRTAKPLVEEIGASEVSEEGV
EDDDEEFDWEIEQSPYEEVPESTLNPECHYGFGNLRSGVFQRLQDELSDVIDLKDPDSTP
AAERRQKRLAAELAKFDPDHYLADFFEDEAVKQVLEYNPWWIDLYSKMMASLGKSQEQEN
LAALVSFSEEEKYQLRKFVNKSYLLDKRACRQVYYSLIDILLAYCYETRVTEGEKNVESA
WNIRKLSPTLCWFETWTNVHEILVSFGRRVLCYPLYRHFKLVMQAYRDTIKVLQLGKSAV
LKCLLDIHKIFQENDPAYILNDLYISDYCVWIQKAKSRKLAALAEALKKASPTKAQLGLE
LQELEAAAFLVQEEEAASKAGARCISGQQTPSSSSETSDSEESESSTSSETEDSDSEHEE
PRGGEREAGPSLLGPFVEESGTALLPDHGGMCRSVVLPGSDDGQGQPLASPRAPGASEPL
IQELGEQLETSVQISEPKGSAAGQXVLKRDSRQTPKI
NT seq
1734 nt
NT seq
+upstream
nt +downstream
nt
atgctgaccccggcgttcgaccttagccaggaccccgacttcctgactgtcgctatccgc
gtgccctacgcccgggtctccgagttcgacgtctacttcgagggggtcgacttcaggttc
tacgccaagccgtactttctcagattaacccttcctggaagaattgtagaaaatggaagc
gagcagggatcctatgctgcagataaaggaatttttaccattcgattgcccaaagaaact
cctggccagcattttgaagggctgaacatgttaactgctctactggcaccaagaaaatcc
aggactgcaaaaccacttgtggaagaaataggtgcttctgaggtttctgaggaaggagta
gaagatgacgatgaagagtttgattgggaaattgaacagtccccctatgaagaggtacca
gaaagtactttgaatccggagtgccactatgggtttggaaacttacgctcaggagtgttt
cagcggttacaggatgaattgagtgatgttatcgatcttaaggatccagattccacccct
gcagccgaacgaaggcagaaacgcctggctgctgagctggccaagtttgatcctgatcat
tacctagctgacttttttgaagatgaggcagttaaacaggttttggaatataatccgtgg
tggattgatctgtattcaaaaatgatggcttctttgggaaagagtcaggaacaagaaaat
cttgctgcgttagtgtctttttctgaagaagagaaatatcagctgcggaaatttgtcaat
aaatcttacctgctggacaagagagcctgtcgtcaagtgtactacagtttgattgatatc
cttctggcatattgctatgaaactcgtgtcaccgaaggagagaagaatgttgaatccgcg
tggaatatcagaaaactgagtccaacactctgctggtttgagacttggactaatgttcat
gaaatcctggtgtcttttggaagaagagttttgtgctatccactttaccgccatttcaag
ctggtgatgcaagcctacagagacactataaaggtgttgcaactaggtaaaagtgcagtt
ttaaagtgcctactggacattcacaaaatttttcaggaaaatgacccagcttacattcta
aacgatctctacatctcagactactgtgtgtggattcagaaagccaagtccagaaagttg
gcagctcttgcggaagccttaaagaaagcatccccgaccaaggcccagctggggttggaa
ctgcaggaactggaagcagcggcattcttggtccaggaggaagaagctgcatcgaaagca
ggagcccgttgcatttccgggcagcagacgccttcctccagctctgagacaagcgattcg
gaggaatcagagagcagcacatcgtctgagacggaggactcagactcggaacacgaggag
cccagaggtggtgaacgtgaggcagggccttccttgctcggtccctttgttgaggaaagc
ggcacggccctgcttcctgaccatggtgggatgtgcagaagcgtggtcctcccagggtct
gatgatggtcagggacagccgctcgcctctccccgggctcctggggcatctgagcctcta
atccaggagcttggagaacaactggagacttcggttcagatttctgagcccaagggctct
gctgctggacagnncgtgctgaagagagacagccggcagacacccaagatttga
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