Phocoena sinus (vaquita): 116762938
Help
Entry
116762938 CDS
T07759
Symbol
TRAIP
Name
(RefSeq) E3 ubiquitin-protein ligase TRAIP isoform X1
KO
K11985
TRAF-interacting protein [EC:
2.3.2.27
]
Organism
psiu
Phocoena sinus (vaquita)
Brite
KEGG Orthology (KO) [BR:
psiu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
psiu04121
]
116762938 (TRAIP)
Enzymes [BR:
psiu01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
116762938 (TRAIP)
Ubiquitin system [BR:
psiu04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
116762938 (TRAIP)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_2
zf-C3HC4_2
zf-rbx1
zf-C3HC4_4
zf-C3HC4
zf-RING_5
zf-RING_UBOX
zf-ANAPC11
zf-RING_Vps41
zf-RING_11
zf-C3HC4_3
zf-RING_16
MscS_porin
OVT1
FAA_hydro_N_2
zf_RING_Vps8
Rod_CreS
WEMBL
HIP1_clath_bdg
Zn_ribbon_8
Prok-RING_1
CCDC39
RINGv
zf-RING-like
DUF3450
RING_XB3-XBAT31
FANCL_C
Motif
Other DBs
NCBI-GeneID:
116762938
NCBI-ProteinID:
XP_032506447
Ensembl:
ENSPSNG00000012486
UniProt:
A0A8C9C7U4
LinkDB
All DBs
Position
11:38528604..38555498
Genome browser
AA seq
471 aa
AA seq
DB search
MPIRALCTICSDFFDHSRDVAAIHCGHTFHLQCLIQWFETAPSRTCPQCRIQVGKRTIIN
KLFFDLAQEEESVLDAEFLKNELDNTRALLSQKEKEKRDGQLIIDTLRDTLEERNATVES
LQEALDKAEMLCSTLKKQMKYLEQQQDETKQAREEARRLRNKMKTMERIELLLQSQRPEV
EEMIRDMGVGQSAVEQLAVYCVSLKKEYENLKEARKASGELADKLKKDLFSSRSKLQTVY
SELDQAKLELRSAQKDLQSADKEIASLRKKLMMLQETLNLPPVDSEAVNRLVLESPAPVE
MLNLKLHRPAFGDDIDLNATFNVDTPPAQPSSTQHGHAKRLFPEKAHSPVQDVLKKMPKG
PKQESQLLLGGQRCLGEPDEELAGAFPVFIRNAVLGQKQTKRTRAEPCRSTDAVRTGFDG
LGGRTKFIQPTDTTMIRSLPVKSKPKARAKQRLGARTVLPPSQAKLDTFLW
NT seq
1416 nt
NT seq
+upstream
nt +downstream
nt
atgcctatccgtgctctgtgtaccatttgctccgacttcttcgatcactcccgcgacgtg
gccgccattcactgcggccacaccttccacttgcagtgcctaattcagtggttcgagacg
gcaccaagtcggacctgcccgcagtgccgaatccaggtcggtaaaagaaccattatcaat
aagctcttctttgaccttgcccaggaagaggagagtgtcttagatgcagaattcttaaag
aatgaactggataataccagagctctgctttcccagaaagagaaggaaaaacgagacggc
cagcttatcattgacactctgcgggacacgctggaagaacgcaacgccactgttgaatcc
ctgcaggaggccttagacaaggctgagatgctgtgctccaccctcaagaagcagatgaag
tacttggaacagcagcaggatgagaccaaacaagcacgggaggaggcccgccggctccgg
aacaagatgaagaccatggagcgaattgagctcctactccagagtcagcggcccgaggtg
gaggagatgatccgtgacatgggtgtgggacagtcagcggtggaacagttggctgtgtac
tgcgtgtccctcaagaaagagtacgagaatctaaaagaggcacggaaggcctcaggggag
ctagccgacaaactgaagaaggatttgttttcttccagaagcaagttgcagacagtctac
tctgaactggaccaggccaagttggagctgaggtcggcccagaaggacttacagagtgct
gacaaggaaatcgcaagcctgagaaaaaagctaatgatgctgcaggaaaccctgaacctg
ccaccagtggacagtgaggctgtcaaccgcctggttttagagagcccagctcctgtggag
atgctgaacctgaagcttcaccggccagccttcggcgatgatattgacctcaatgccacc
tttaatgtggatactcccccagcccagccctccagcacccagcatggccatgccaagagg
ctcttcccagagaaggcacattctcccgttcaggacgttctcaagaagatgcccaaaggc
cccaagcaggagtcccagctcttgctgggtggccagcgctgtctgggagagcctgatgag
gagctggctggtgccttccctgtcttcatccggaatgctgtcctgggccagaaacagacc
aagaggaccagggcagagccctgtcgcagcacagatgcagtaaggactggcttcgatgga
cttggaggccggacaaaattcatccagcctactgacacgactatgatccgctcactgccc
gttaaatccaagcccaaggccagggctaagcagagactgggggccaggacagtgctccct
ccctcccaggccaagctggacaccttcctgtggtag
DBGET
integrated database retrieval system
