Phocoena sinus (vaquita): 116763345
Help
Entry
116763345 CDS
T07759
Symbol
RIMS1
Name
(RefSeq) LOW QUALITY PROTEIN: regulating synaptic membrane exocytosis protein 1
KO
K15291
regulating synaptic membrane exocytosis protein 1
Organism
psiu
Phocoena sinus (vaquita)
Pathway
psiu04721
Synaptic vesicle cycle
psiu04723
Retrograde endocannabinoid signaling
Brite
KEGG Orthology (KO) [BR:
psiu00001
]
09150 Organismal Systems
09156 Nervous system
04723 Retrograde endocannabinoid signaling
116763345 (RIMS1)
04721 Synaptic vesicle cycle
116763345 (RIMS1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
psiu04131
]
116763345 (RIMS1)
Membrane trafficking [BR:
psiu04131
]
Exocytosis
Calcium ion-dependent exocytosis
Acrosomal exocytosis proteins
116763345 (RIMS1)
Small GTPases and associated proteins
Rab associated proteins
116763345 (RIMS1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
C2
RIM2a_ZnF
PDZ
FYVE_2
PDZ_6
Zn_ribbon_Nudix
Motif
Other DBs
NCBI-GeneID:
116763345
NCBI-ProteinID:
XP_032506800
Ensembl:
ENSPSNG00000019041
LinkDB
All DBs
Position
12:complement(81572297..82047771)
Genome browser
AA seq
1685 aa
AA seq
DB search
MSSAVGPRGPRPPTVPPPMPELPDLSHLTEEERNIIMAVMDRQKEEEEKEEAMLKCVVRD
MVKPAACKTPRNVEHQPHQPSPRLHQQFESYKEQVRKIGEEARRYQGEHKDDAPTCGICH
KTKFADGCGHLCSYCSTKFCARCGGRVSLRSNNEDKVVMWVCNLCRKQQEILTKSGAWFF
GSGPQQPSQDGTLSDTATGAGSEAPREKKSRLQERSRSQTPLSTATASPQDQVPHSVPPD
RRKGAEPSQQAGRPEQKQASFRSRSEPPRDRKKTPGLAEQNGKGAPKGERKRAPRSSAQP
AEGPTEERERKERRESRRLEKGRSQDYPDVPEKRENGPAVEAEKQRKEEEYQTRYRSDPN
LARYPVKPPPEEQQMRMHARMSRARHERRHSDVALPRTEAAAGPEVRPGPRAPNAARGSP
PASPRAYSAERTAEARAPGAQPLAEPSPPAPRPGPGPADAPEPRAPEPLRKQSRLDPGAA
VLVRKAKREKVETMLRNDSLSSDQSESVRPSPPKPHRAKRGGKRRQMSVSSSEEEGVSTP
EYTSCEDVELESESVSEKGDLDYYWLDPATWHSRETSPISSHPVTWQPSKEGDRLIGRVI
LNKRTTMPKESGALLGLKVVGGKMTDIGRLGAFITKVKKGSLADVVGHLRAGDEVLEWNG
KPLPGATNEEVYNIILESKSEPQVEIIVSRPIGDIPRIPESSHPPLESSSSSFESQKMER
PSISVISPTSPGALKDAPQVLPGQLSVKLWYDKVGHQLIVNVLQATDLPPRVDGRPRNPY
VKMYFLPDRSDKSKRRTKTVKKVLEPKWNQTFVYSHVHRRDFRERMLEITVWDQPRVQEE
ESEFLGEILIELETALLDDEPHWYKLQTHDESSLPLPQPSPFMPRRHVHGESASKKLQRS
QRISDSDISDYEVDDAIGVVPPVGYRSSARESKPSTLTVPEQQRTTHHRSRSVSPHRGDD
QGRPRSRLPNVPLQRSLDEIHPTRRSRSPTRHHDVSCSPVGHRPGDVDSQCLSEQDSELL
MLPRAKRGRSAECLHTTRHLVRHYKTLPPKMPLLENCSHWNIYSSILPAHTKTKPLHHEC
FHSRALRFTDEILVSDLQPSLDRARSASTNCLRPDASLHSPERERGRWSPSLDRRRPPSP
RIQIQHASPENDRHSRKSERSSTQKQTRKGTASDAERVLPPCLSRRGYAAPRATDQLVLR
GKHPARSRSSEHPSVRTLCSMHHLAPGGSAPPSPLLTRVHRQASPTRSPPADTAFGSPRG
RQLPQVPGRSGSAEQASLVVEERTRQMKMKVHRFKQTTGSGSSRELDREQYSKYNVHTDQ
YRSCDSVSARSSDSDVSDVSAISRTSSTSFLSEQSERPRGRTSSFTPKMQGRRMGTSGRA
ITKSTSVSGQMYTLEHNDGSQSDTAVGTVGTGGKKRRSSLSAKVVAIVTRRSRSTSQLSQ
TESGHKKLKSTIQRSTETGMAAEMRKMVRQPSRESTDGSINSYSSEGNLIFPGVRLGADS
QFSDFLDGLGPAQLVGRQTLATPAMGDIQIGMEDKKGQLEVEVIRARSLTQKPGSKSTPA
PYVKVYLLENGACIAKKKTRIARKTLDPLYQQSLVFDESPQGKSPSGHCLSLQVIVWGDY
GRMDHKCFMGVAQILLEELDLSSMVIGWYKLFPPSSLVEPTLTSLTRRASQSSLESSTGP
PCIRS
NT seq
5058 nt
NT seq
+upstream
nt +downstream
nt
atgtcctcggccgtggggccccgcggtccccgcccgcccaccgtgcctcccccgatgccc
gagctgcccgacctgagccacctgaccgaggaggagaggaacatcatcatggcagtgatg
gaccggcagaaagaagaggaggagaaggaagaagccatgctcaagtgtgtggtcagggac
atggtgaagcctgctgcctgcaaaaccccaagaaatgttgaacaccagccccaccagcct
tcaccgagattgcatcaacaatttgaaagctataaggagcaagtgagaaaaataggggaa
gaagcacggcgttaccagggtgagcacaaagacgatgctccgacctgcgggatctgccac
aagaccaagttcgccgatggctgcggccacctgtgctcctactgcagcaccaagttctgc
gcgcgctgcgggggccgcgtgtccctgcggtccaacaacgaggacaaagtggtgatgtgg
gtatgcaatttgtgtcgaaagcaacaagaaatcttaaccaaatcgggggcgtggttcttc
ggaagcggccctcagcagccaagtcaggatggaaccctcagcgatacagctacaggcgct
ggttctgaggccccgagagaaaagaaatcccggctgcaggagcgatctaggtctcagacc
cccctgagcacagccactgcctctccccaggaccaggttccccacagcgtgccgcccgac
aggagaaagggggctgagccctcgcagcaagccgggaggcctgagcagaagcaggcttct
ttcaggtctagaagtgagcctcccagagacaggaagaagaccccagggctcgccgagcag
aatggcaaaggcgccccgaagggcgagcggaaacgcgcacccaggtcctctgcgcagccc
gcggaggggcccacggaagaacgggagcgcaaggaaaggcgggaaagccgaaggctcgag
aaaggccggtcccaggactaccccgacgtgccagagaaacgcgagaacggcccggcggtg
gaggccgagaagcagaggaaggaggaggagtaccagacccggtaccgcagcgacccgaac
ctggcgcggtacccggtcaagccgccgcccgaggagcagcagatgcgcatgcacgcgcgg
atgtcccgcgccaggcacgagcggcgccacagcgacgtggccctgccgcgcaccgaggcc
gcagctgggcccgaggtcaggcccggcccccgcgcgcccaacgccgcccggggctcgcct
cccgcctcgccgcgcgcctactcggccgagaggaccgcggaggcccgggcgccgggcgcc
cagccgctcgccgagcccagcccgccggcgccccggcccggcccgggccccgccgacgcc
ccggagcccagggccccggagccgctccggaagcagagccgcctggaccccggcgcggcc
gtcctcgtgcgcaaggccaagcgcgagaaggtggagaccatgctgcgcaacgactcgctc
agctccgaccagtccgagtccgtgcggccgtctccgcccaagccgcatcgcgccaagagg
ggcggcaagcggcgccagatgtcggtgagcagctcggaggaggagggcgtgtccacgccg
gagtacacgagctgcgaggacgtggagctagagagcgagagcgtcagcgagaagggtgac
ttggattattactggctggatcccgccacgtggcatagccgggaaacatcacctattagc
tcacatcctgtaacgtggcagccatctaaagagggggaccgattaattggacgcgttatt
cttaacaagagaacaaccatgcccaaagaatcaggtgcattactgggtctgaaagttgtt
ggagggaaaatgactgacataggacgcctcggtgctttcatcaccaaagtaaagaagggt
agcctcgcagatgtagttggacacttgagagcaggggatgaagttctagaatggaatggt
aaacccctgccgggagctacaaatgaagaagtttacaacattattttagaatcaaaatca
gaacctcaagttgaaattattgtttcaaggcctattggtgacattccacggattcctgag
agctcccaccctccactggagtccagttctagttcctttgaatctcagaagatggaaagg
ccttccatttctgtaatttctccaacaagccctggagctctcaaggatgcgccacaagtc
ttaccaggacaactttctgtgaagctgtggtatgacaaagtgggccaccagctgattgta
aatgttctgcaagcaacagatctacccccaagagtagatgggcgtcccaggaatccctat
gtaaaaatgtattttcttccagatagaagtgataaaagtaaaaggcgaaccaaaacagta
aagaaagtactagaaccaaaatggaaccagacttttgtgtattcacacgtgcatcgtaga
gatttcagagaacggatgttggaaataaccgtgtgggaccagcccagggtgcaagaagag
gagagtgaattccttggagagatcctcatagagttggagacggcgcttctagatgatgag
ccgcattggtataaacttcagactcacgatgaatcctcactacctctgcctcagccatca
cccttcatgccacggcgacacgtccacggggagagcgccagcaaaaagctgcaaaggtcc
cagcgaatcagtgacagtgacatatcagactatgaggttgatgatgccattggagtggtc
cctccagtaggttataggtctagtgctagagaaagcaaaccttcaacattaactgtacca
gagcagcagagaacaacgcatcaccgatcacggtcggtatctcctcatcgtggcgatgat
caggggaggccgcgttcccgtttaccaaatgtgccattacagaggagtttagatgaaatt
catccaacaagaaggtcacgttctccaaccagacaccacgatgtgtcctgcagcccagtt
ggtcacagacccggagatgtggacagtcagtgtctatcagaacaagacagtgagcttctc
atgcttcccagagcaaaacgaggacgaagtgcagaatgcctacacaccaccagacatctt
gttaggcactataaaacattaccgcccaagatgcccttgttagagaactgttctcactgg
aatatttacagctcaattctgcctgcacatactaaaaccaaaccccttcaccatgaatgc
tttcactcgagagcactgaggtttactgatgagattctggttagtgacctgcagccctcc
cttgacagggcgaggagtgctagtaccaactgcttgagaccagatgctagtttgcattca
ccagaacgagaaaggggtagatggtccccctctctagataggagacggcctcctagcccc
aggattcaaatccagcatgcgtctccggagaatgacaggcactccagaaagtctgaaaga
tctagcacccaaaaacagactaggaaaggcactgcctctgatgcagaaagggttctccca
ccatgtctttctagaaggggatacgcagccccgagagcgactgatcagctagtgcttagg
ggaaaacatcccgctcgctcccgctcgagtgagcaccctagtgtcagaacactgtgttct
atgcaccaccttgcccccggagggtcggcaccaccttctccgctcctgacaagagtgcac
cggcaggccagcccgacgcggtccccgcccgcagacacagcctttggcagccctcggggc
aggcagctcccacaagtgccagggaggagcggcagtgcagaacaagcaagcttagtagtg
gaggagcgaacgagacagatgaaaatgaaagtgcatcgatttaagcagacaacagggtct
ggttctagtcgagaacttgatcgcgaacaatactccaagtataacgtacatacagatcag
taccgaagctgcgacagcgtctccgccagatcctcagacagtgacgtcagcgacgtgtct
gccatctccaggaccagtagcaccagcttcctgtccgagcaatctgagcggcccaggggc
aggaccagttcatttacccctaaaatgcaaggcagacggatggggacttcaggaagagcc
atcaccaagagcacgagcgtgagtggacagatgtacacactggagcataatgatggcagt
cagtcggacacggctgtgggcactgttggaacaggtgggaagaaaaggaggtccagcctg
agtgccaaagtggttgccatcgtgactcgaaggagcagaagcacgtcccagctaagccaa
acagagtcaggccacaagaagttaaaaagcaccatccagagaagcacagagacgggcatg
gcagccgagatgagaaagatggtgaggcagccaagccgggagtctacggacggcagcatc
aacagttacagctctgagggaaacttaatatttcctggagtgagactaggagcggatagt
caattcagtgattttctcgatggactgggacccgcccagcttgttggccgccaaaccctc
gccacccctgcaatgggtgatatacaaattggaatggaggataaaaaaggccaattagaa
gttgaagtgattagagcacgaagcctcacgcaaaagcctggttccaaatccacacctgct
ccatacgtcaaagtgtatcttttggagaacggggcctgcatagccaaaaagaagacaaga
attgcacgaaagacccttgaccccttgtatcaacagtccctggtttttgacgaaagtcca
cagggtaaaagtccttcaggtcattgtctgtctctgcaggtgattgtctggggagactac
ggcaggatggatcacaaatgctttatgggcgtggcccagatcttgttggaggaactggat
ctttccagcatggtcatcggctggtacaagctgttccccccgtcatcactggttgaaccc
acgctcacctccctgacccgccgggcttcccaatcatctctggaaagttccaccggcccc
ccctgcatccggtcctaa
DBGET
integrated database retrieval system
